Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33815 * 124.52180 * 2 1 4 4 C 1.37473 * 115.10047 * 179.97438 * 3 2 1 5 5 C 1.36642 * 113.29848 * 0.02562 * 4 3 2 6 6 C 1.46585 * 125.45930 * 180.25737 * 5 4 3 7 7 O 1.21700 * 120.00069 * 359.72666 * 6 5 4 8 8 N 1.34779 * 119.99927 * 179.71625 * 6 5 4 9 9 C 1.46497 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46988 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00056 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00144 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99988 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47700 * 34.99928 * 13 12 10 15 15 C 1.53008 * 109.47238 * 274.99991 * 13 12 10 16 16 C 1.53007 * 109.47260 * 154.99853 * 13 12 10 17 17 N 1.46499 * 109.47186 * 305.00150 * 16 13 12 18 18 C 1.46502 * 119.99757 * 269.99938 * 17 16 13 19 19 C 1.36932 * 120.00180 * 89.99547 * 17 16 13 20 20 H 1.08000 * 120.00200 * 20.30443 * 19 17 16 21 21 C 1.38810 * 120.00092 * 200.30921 * 19 17 16 22 22 N 1.31616 * 120.00156 * 15.01122 * 21 19 17 23 23 Si 1.86803 * 120.00085 * 195.01754 * 21 19 17 24 24 H 1.48498 * 109.47263 * 84.99558 * 23 21 19 25 25 H 1.48499 * 109.47233 * 205.00045 * 23 21 19 26 26 H 1.48498 * 109.46889 * 324.99791 * 23 21 19 27 27 S 1.70612 * 124.52303 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.01806 * 1 2 3 30 30 H 1.09008 * 109.47292 * 60.01361 * 1 2 3 31 31 H 1.08003 * 122.44971 * 359.96412 * 3 2 1 32 32 H 1.08008 * 123.34739 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99673 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47227 * 300.00511 * 9 8 6 35 35 H 1.09002 * 109.47228 * 60.00676 * 9 8 6 36 36 H 0.96997 * 119.99583 * 359.97438 * 12 10 9 37 37 H 1.08989 * 109.46620 * 59.99785 * 15 13 12 38 38 H 1.08998 * 109.47005 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46595 * 300.00003 * 15 13 12 40 40 H 1.09007 * 109.46340 * 64.99878 * 16 13 12 41 41 H 1.09001 * 109.47211 * 184.99528 * 16 13 12 42 42 H 1.09003 * 109.47330 * 95.10195 * 18 17 16 43 43 H 1.08998 * 109.47023 * 215.10360 * 18 17 16 44 44 H 1.09001 * 109.47062 * 335.10068 * 18 17 16 45 45 H 0.96999 * 120.00035 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0006 5 6 3.9492 -0.4491 0.0005 6 6 5.3123 -0.9882 0.0063 7 8 6.2658 -0.2320 0.0068 8 7 5.5096 -2.3215 0.0114 9 6 6.8718 -2.8603 0.0178 10 6 6.8163 -4.3663 0.0219 11 8 5.7444 -4.9336 0.0192 12 7 7.9579 -5.0828 0.0286 13 6 7.9039 -6.5467 0.0320 14 1 7.0518 -6.8803 -0.5602 15 6 7.7533 -7.0482 1.4697 16 6 9.1942 -7.1061 -0.5708 17 7 9.3997 -6.5323 -1.9030 18 6 8.8474 -7.2029 -3.0826 19 6 10.1080 -5.3690 -2.0456 20 1 10.7814 -5.0476 -1.2648 21 6 9.9604 -4.6029 -3.1937 22 7 8.9455 -4.8192 -4.0032 23 14 11.2025 -3.2651 -3.5898 24 1 12.3590 -3.8599 -4.3068 25 1 10.5641 -2.2354 -4.4485 26 1 11.6719 -2.6364 -2.3290 27 16 2.4739 -1.4057 0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5141 0.8898 30 1 -0.3634 0.5137 -0.8902 31 1 1.8428 2.0965 -0.0006 32 1 4.3549 1.6704 0.0002 33 1 4.7496 -2.9242 0.0107 34 1 7.4018 -2.5190 -0.8714 35 1 7.3956 -2.5134 0.9085 36 1 8.8152 -4.6290 0.0303 37 1 6.8342 -6.6497 1.8990 38 1 7.7136 -8.1374 1.4722 39 1 8.6054 -6.7146 2.0619 40 1 10.0368 -6.8470 0.0704 41 1 9.1178 -8.1906 -0.6501 42 1 7.8803 -6.7651 -3.3300 43 1 9.5289 -7.0778 -3.9240 44 1 8.7221 -8.2649 -2.8713 45 1 8.8426 -4.2840 -4.8057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754334075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -21.920197 kcal Electronic energy + Delta-G solvation = -27088.950093 eV Core-core repulsion = 23233.842647 eV Total energy + Delta-G solvation = -3855.107446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.95704 -39.03194 -37.82445 -36.43619 -34.39426 -33.93136 -32.31130 -31.50346 -30.30070 -28.46513 -26.45709 -26.17966 -25.64026 -23.71182 -22.10098 -21.38142 -20.46542 -19.84122 -19.41626 -18.17797 -16.89391 -16.56703 -16.13181 -15.72750 -15.61811 -15.29464 -14.90101 -14.69922 -14.46767 -14.09481 -13.78787 -13.73543 -13.32244 -13.22691 -12.98774 -12.80212 -12.58726 -12.51863 -12.23717 -12.11136 -12.03286 -11.83245 -11.43547 -11.34784 -11.06773 -10.85795 -10.72540 -10.45789 -10.30504 -10.09620 -10.06839 -9.85436 -9.43162 -9.15043 -8.79143 -8.74741 -8.60014 -8.39258 -6.85058 -5.78001 -3.22796 0.35568 1.28697 1.70467 2.23460 2.98932 3.10932 3.22279 3.35246 3.41982 3.44846 3.89305 4.44682 4.49643 4.80392 4.89026 5.12293 5.15806 5.16248 5.30448 5.36142 5.44355 5.53337 5.58231 5.61524 5.76199 5.80565 5.82739 5.93696 5.98831 6.11817 6.18324 6.19609 6.31369 6.41399 6.46342 6.69916 6.82889 7.14989 7.33806 7.50465 7.66412 7.75111 8.08407 8.21621 8.31222 8.74435 9.15874 9.80586 10.29545 11.25804 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002994 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.859168 B = 9349.436037 C =10520.251964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.200 4.200 3 C -0.158 4.158 4 C -0.052 4.052 5 C -0.266 4.266 6 C 0.591 3.409 7 O -0.531 6.531 8 N -0.709 5.709 9 C 0.100 3.900 10 C 0.514 3.486 11 O -0.562 6.562 12 N -0.679 5.679 13 C 0.118 3.882 14 H 0.078 0.922 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.598 5.598 18 C 0.163 3.837 19 C -0.261 4.261 20 H 0.068 0.932 21 C 0.007 3.993 22 N -0.897 5.897 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 S 0.212 5.788 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.407 0.593 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.043 0.957 44 H -0.003 1.003 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 5.525 10.440 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.320 4.320 3 C -0.189 4.189 4 C -0.085 4.085 5 C -0.386 4.386 6 C 0.377 3.623 7 O -0.410 6.410 8 N -0.363 5.363 9 C -0.027 4.027 10 C 0.299 3.701 11 O -0.442 6.442 12 N -0.328 5.328 13 C 0.010 3.990 14 H 0.096 0.904 15 C -0.219 4.219 16 C 0.013 3.987 17 N -0.321 5.321 18 C 0.018 3.982 19 C -0.390 4.390 20 H 0.086 0.914 21 C -0.192 4.192 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 S 0.480 5.520 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.243 0.757 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.016 0.984 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.804 4.118 10.240 17.674 hybrid contribution 0.944 2.359 -0.493 2.588 sum -12.861 6.476 9.747 17.388 Atomic orbital electron populations 1.20384 0.87432 1.03207 1.03287 1.24302 1.01602 0.98045 1.08043 1.19916 0.92598 0.99590 1.06825 1.20735 0.96173 0.95098 0.96530 1.24541 0.96810 0.98133 1.19121 1.16877 0.86921 0.81931 0.76618 1.90837 1.41719 1.58042 1.50389 1.45528 1.09323 1.06425 1.75038 1.21125 0.84423 0.91987 1.05150 1.20168 0.84842 0.88829 0.76247 1.90609 1.29263 1.72137 1.52216 1.45617 1.08294 1.07192 1.71705 1.21885 1.02468 0.79573 0.95031 0.90433 1.22155 1.01396 1.00815 0.97491 1.21192 0.93523 0.96096 0.87861 1.43914 1.62596 1.25773 0.99774 1.20798 0.98554 0.89892 0.88930 1.19066 1.16959 0.98833 1.04148 0.91438 1.24947 0.97112 0.98121 0.99049 1.70087 1.27888 1.41583 1.14547 0.86402 0.81106 0.81461 0.78342 1.21505 1.21754 1.20399 1.83259 0.94127 1.07085 1.67551 0.91217 0.90285 0.90243 0.83883 0.82920 0.75436 0.87525 0.88618 0.75662 0.92959 0.92173 0.92927 0.93231 0.92878 0.95299 0.93863 0.98439 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.33 36.00 0.37 -0.16 16 2 C -0.20 -1.89 6.28 -35.86 -0.23 -2.11 16 3 C -0.16 -1.55 9.99 -41.41 -0.41 -1.96 16 4 C -0.05 -0.63 10.01 -40.44 -0.40 -1.03 16 5 C -0.27 -3.64 6.45 -36.79 -0.24 -3.88 16 6 C 0.59 9.77 7.78 -12.89 -0.10 9.67 16 7 O -0.53 -10.25 16.84 5.19 0.09 -10.17 16 8 N -0.71 -11.51 5.52 -62.83 -0.35 -11.86 16 9 C 0.10 1.68 6.15 -5.20 -0.03 1.65 16 10 C 0.51 9.56 7.86 -10.98 -0.09 9.47 16 11 O -0.56 -11.58 15.33 5.56 0.09 -11.49 16 12 N -0.68 -12.33 4.49 -53.80 -0.24 -12.58 16 13 C 0.12 2.09 2.88 -67.93 -0.20 1.90 16 14 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 15 C -0.16 -2.28 9.49 37.16 0.35 -1.92 16 16 C 0.14 2.61 5.36 -4.04 -0.02 2.59 16 17 N -0.60 -13.83 2.82 -181.11 -0.51 -14.34 16 18 C 0.16 3.89 9.02 59.85 0.54 4.43 16 19 C -0.26 -6.46 8.02 -15.06 -0.12 -6.59 16 20 H 0.07 1.61 7.86 -52.49 -0.41 1.20 16 21 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 22 N -0.90 -25.12 10.67 55.49 0.59 -24.53 16 23 Si 0.90 21.08 29.58 -169.99 -5.03 16.05 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 S 0.21 2.34 22.08 -107.50 -2.37 -0.04 16 28 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.41 6.40 6.55 -40.82 -0.27 6.13 16 34 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.41 7.29 7.40 -40.82 -0.30 6.99 16 37 H 0.05 0.79 8.14 -51.94 -0.42 0.36 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.86 8.03 -51.92 -0.42 0.45 16 41 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 42 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 43 H 0.04 1.11 7.21 -51.93 -0.37 0.74 16 44 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -31.53 390.60 -9.24 -40.77 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -6.73 Total: 10.13 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -0.66 Total: 12.16 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.51 Total: -63.30 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.17 Total: -21.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.37 Total: -0.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.53 -9.24 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754334075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds