Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33815 * 124.52180 * 2 1 4 4 C 1.37473 * 115.10047 * 179.97438 * 3 2 1 5 5 C 1.36642 * 113.29848 * 0.02562 * 4 3 2 6 6 C 1.46585 * 125.45930 * 180.25737 * 5 4 3 7 7 O 1.21700 * 120.00069 * 359.72666 * 6 5 4 8 8 N 1.34779 * 119.99927 * 179.71625 * 6 5 4 9 9 C 1.46497 * 119.99770 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46988 * 180.02562 * 9 8 6 11 11 O 1.21280 * 120.00056 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00144 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99988 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47700 * 34.99928 * 13 12 10 15 15 C 1.53008 * 109.47238 * 274.99991 * 13 12 10 16 16 C 1.53007 * 109.47260 * 154.99853 * 13 12 10 17 17 N 1.46499 * 109.47186 * 305.00150 * 16 13 12 18 18 C 1.46502 * 119.99757 * 269.99938 * 17 16 13 19 19 C 1.36932 * 120.00180 * 89.99547 * 17 16 13 20 20 H 1.08000 * 120.00200 * 20.30443 * 19 17 16 21 21 C 1.38810 * 120.00092 * 200.30921 * 19 17 16 22 22 N 1.31616 * 120.00156 * 15.01122 * 21 19 17 23 23 Si 1.86803 * 120.00085 * 195.01754 * 21 19 17 24 24 H 1.48498 * 109.47263 * 84.99558 * 23 21 19 25 25 H 1.48499 * 109.47233 * 205.00045 * 23 21 19 26 26 H 1.48498 * 109.46889 * 324.99791 * 23 21 19 27 27 S 1.70612 * 124.52303 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47227 * 300.01806 * 1 2 3 30 30 H 1.09008 * 109.47292 * 60.01361 * 1 2 3 31 31 H 1.08003 * 122.44971 * 359.96412 * 3 2 1 32 32 H 1.08008 * 123.34739 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99673 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47227 * 300.00511 * 9 8 6 35 35 H 1.09002 * 109.47228 * 60.00676 * 9 8 6 36 36 H 0.96997 * 119.99583 * 359.97438 * 12 10 9 37 37 H 1.08989 * 109.46620 * 59.99785 * 15 13 12 38 38 H 1.08998 * 109.47005 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46595 * 300.00003 * 15 13 12 40 40 H 1.09007 * 109.46340 * 64.99878 * 16 13 12 41 41 H 1.09001 * 109.47211 * 184.99528 * 16 13 12 42 42 H 1.09003 * 109.47330 * 95.10195 * 18 17 16 43 43 H 1.08998 * 109.47023 * 215.10360 * 18 17 16 44 44 H 1.09001 * 109.47062 * 335.10068 * 18 17 16 45 45 H 0.96999 * 120.00035 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0006 5 6 3.9492 -0.4491 0.0005 6 6 5.3123 -0.9882 0.0063 7 8 6.2658 -0.2320 0.0068 8 7 5.5096 -2.3215 0.0114 9 6 6.8718 -2.8603 0.0178 10 6 6.8163 -4.3663 0.0219 11 8 5.7444 -4.9336 0.0192 12 7 7.9579 -5.0828 0.0286 13 6 7.9039 -6.5467 0.0320 14 1 7.0518 -6.8803 -0.5602 15 6 7.7533 -7.0482 1.4697 16 6 9.1942 -7.1061 -0.5708 17 7 9.3997 -6.5323 -1.9030 18 6 8.8474 -7.2029 -3.0826 19 6 10.1080 -5.3690 -2.0456 20 1 10.7814 -5.0476 -1.2648 21 6 9.9604 -4.6029 -3.1937 22 7 8.9455 -4.8192 -4.0032 23 14 11.2025 -3.2651 -3.5898 24 1 12.3590 -3.8599 -4.3068 25 1 10.5641 -2.2354 -4.4485 26 1 11.6719 -2.6364 -2.3290 27 16 2.4739 -1.4057 0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5141 0.8898 30 1 -0.3634 0.5137 -0.8902 31 1 1.8428 2.0965 -0.0006 32 1 4.3549 1.6704 0.0002 33 1 4.7496 -2.9242 0.0107 34 1 7.4018 -2.5190 -0.8714 35 1 7.3956 -2.5134 0.9085 36 1 8.8152 -4.6290 0.0303 37 1 6.8342 -6.6497 1.8990 38 1 7.7136 -8.1374 1.4722 39 1 8.6054 -6.7146 2.0619 40 1 10.0368 -6.8470 0.0704 41 1 9.1178 -8.1906 -0.6501 42 1 7.8803 -6.7651 -3.3300 43 1 9.5289 -7.0778 -3.9240 44 1 8.7221 -8.2649 -2.8713 45 1 8.8426 -4.2840 -4.8057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754334075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -42.816943 kcal Electronic energy + Delta-G solvation = -27089.856244 eV Core-core repulsion = 23233.842647 eV Total energy + Delta-G solvation = -3856.013597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31986 -40.39982 -38.75329 -38.07584 -35.92320 -35.48237 -33.30580 -33.03775 -31.87255 -29.59929 -28.03478 -27.44897 -27.34778 -24.55352 -23.66702 -22.67775 -21.95831 -21.31223 -20.56285 -19.22463 -18.69028 -17.81621 -17.56830 -17.02507 -16.93335 -16.63614 -16.59050 -15.93957 -15.68373 -15.55550 -15.01671 -14.87725 -14.78238 -14.54892 -14.25225 -14.00572 -13.91006 -13.80564 -13.35325 -13.26334 -13.10134 -12.94354 -12.85922 -12.75037 -12.71277 -12.53032 -12.14862 -11.95975 -11.94407 -11.89106 -11.67060 -11.40223 -10.96144 -10.59211 -10.48334 -9.88926 -9.67853 -9.60599 -8.78400 -7.78272 -5.22719 -0.57213 0.40505 0.85408 1.31695 1.47308 1.50282 1.56033 1.57122 1.75309 2.05799 2.48841 2.53774 3.36991 3.59601 3.70873 3.80751 3.86207 4.18311 4.21455 4.24036 4.32869 4.35951 4.46210 4.56159 4.66566 4.74511 4.78067 4.85859 4.92094 4.99884 5.03312 5.05117 5.06864 5.15288 5.20470 5.34670 5.39459 5.42540 5.66934 5.70045 5.75167 6.22927 6.33811 6.62438 6.90808 7.17212 7.26033 7.91010 8.35765 9.24692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012824 B = 0.002994 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.859168 B = 9349.436037 C =10520.251964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.181 4.181 3 C -0.167 4.167 4 C -0.044 4.044 5 C -0.309 4.309 6 C 0.589 3.411 7 O -0.569 6.569 8 N -0.709 5.709 9 C 0.106 3.894 10 C 0.512 3.488 11 O -0.584 6.584 12 N -0.679 5.679 13 C 0.122 3.878 14 H 0.045 0.955 15 C -0.146 4.146 16 C 0.140 3.860 17 N -0.612 5.612 18 C 0.177 3.823 19 C -0.244 4.244 20 H 0.083 0.917 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.948 3.052 24 H -0.291 1.291 25 H -0.310 1.310 26 H -0.262 1.262 27 S 0.213 5.787 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.152 0.848 33 H 0.410 0.590 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.409 0.591 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.076 0.924 42 H -0.006 1.006 43 H 0.016 0.984 44 H 0.030 0.970 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 5.600 12.426 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.301 4.301 3 C -0.196 4.196 4 C -0.079 4.079 5 C -0.429 4.429 6 C 0.378 3.622 7 O -0.451 6.451 8 N -0.362 5.362 9 C -0.021 4.021 10 C 0.298 3.702 11 O -0.467 6.467 12 N -0.328 5.328 13 C 0.014 3.986 14 H 0.063 0.937 15 C -0.205 4.205 16 C 0.014 3.986 17 N -0.334 5.334 18 C 0.032 3.968 19 C -0.374 4.374 20 H 0.101 0.899 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.779 3.221 24 H -0.218 1.218 25 H -0.238 1.238 26 H -0.186 1.186 27 S 0.481 5.519 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.245 0.755 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.012 0.988 43 H 0.035 0.965 44 H 0.048 0.952 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.576 4.158 12.279 19.507 hybrid contribution 1.095 2.284 -1.058 2.745 sum -13.481 6.442 11.221 18.685 Atomic orbital electron populations 1.20574 0.84783 1.04266 1.04932 1.24800 1.03172 0.96907 1.05213 1.20150 0.91431 1.01143 1.06913 1.20986 0.97515 0.94450 0.94919 1.24363 0.96343 0.99307 1.22911 1.17285 0.87905 0.81514 0.75522 1.90795 1.43238 1.58665 1.52388 1.45538 1.09056 1.06626 1.75015 1.21039 0.85046 0.90839 1.05182 1.20396 0.84607 0.89438 0.75785 1.90590 1.30033 1.72719 1.53316 1.45678 1.08210 1.07594 1.71289 1.21786 1.00617 0.79225 0.96939 0.93686 1.22026 1.01704 1.02075 0.94706 1.21415 0.94327 0.97212 0.85682 1.44150 1.62387 1.25404 1.01459 1.20506 0.96042 0.91497 0.88786 1.19429 1.15989 0.98410 1.03561 0.89931 1.25543 0.98527 1.00388 0.99757 1.70261 1.29859 1.42899 1.14929 0.85556 0.79089 0.79224 0.78268 1.21823 1.23751 1.18598 1.83232 0.93209 1.07830 1.67644 0.90541 0.88320 0.88628 0.80948 0.83012 0.75168 0.89463 0.86513 0.75455 0.93930 0.89979 0.91032 0.91205 0.90623 0.98792 0.96516 0.95171 0.94979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.33 71.24 0.74 -0.07 16 2 C -0.18 -3.00 6.28 24.68 0.15 -2.84 16 3 C -0.17 -2.90 9.99 21.08 0.21 -2.69 16 4 C -0.04 -1.05 10.01 21.72 0.22 -0.83 16 5 C -0.31 -8.60 6.45 24.08 0.16 -8.45 16 6 C 0.59 20.23 7.78 86.42 0.67 20.91 16 7 O -0.57 -22.85 16.84 -4.35 -0.07 -22.93 16 8 N -0.71 -23.84 5.52 -470.92 -2.60 -26.44 16 9 C 0.11 3.67 6.15 85.63 0.53 4.19 16 10 C 0.51 19.28 7.86 87.66 0.69 19.97 16 11 O -0.58 -24.52 15.33 -3.03 -0.05 -24.56 16 12 N -0.68 -24.30 4.49 -442.53 -1.99 -26.29 16 13 C 0.12 4.14 2.88 45.00 0.13 4.27 16 14 H 0.04 1.84 7.58 -2.39 -0.02 1.83 16 15 C -0.15 -3.78 9.49 71.98 0.68 -3.10 16 16 C 0.14 4.82 5.36 86.38 0.46 5.28 16 17 N -0.61 -27.68 2.82 -726.91 -2.05 -29.73 16 18 C 0.18 8.50 9.02 127.77 1.15 9.65 16 19 C -0.24 -11.88 8.02 84.03 0.67 -11.20 16 20 H 0.08 3.75 7.86 -2.91 -0.02 3.73 16 21 C -0.05 -2.47 5.06 84.86 0.43 -2.04 16 22 N -0.93 -54.03 10.67 21.65 0.23 -53.80 16 23 Si 0.95 43.87 29.58 68.60 2.03 45.90 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 27 S 0.21 4.58 22.08 -56.49 -1.25 3.33 16 28 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.41 13.33 6.55 -92.71 -0.61 12.73 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.41 14.25 7.40 -92.71 -0.69 13.56 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 2.16 8.03 -2.38 -0.02 2.14 16 41 H 0.08 2.29 7.86 -2.39 -0.02 2.27 16 42 H -0.01 -0.34 7.40 -2.39 -0.02 -0.36 16 43 H 0.02 0.86 7.21 -2.39 -0.02 0.84 16 44 H 0.03 1.22 7.84 -2.39 -0.02 1.20 16 45 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -70.33 390.60 0.87 -69.45 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.28 Total: 32.02 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 6.89 Total: 33.04 kcal Atomic # 7 Polarization: -129.84 SS G_CDS: -6.41 Total: -136.25 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.12 Total: -47.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.25 Total: 3.33 kcal Total: -70.33 0.87 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754334075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.637 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds