Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99913 * 2 1 4 4 C 1.50704 * 109.46901 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71990 * 90.00687 * 4 3 2 6 6 C 1.33562 * 115.76764 * 179.97438 * 5 4 3 7 7 C 1.47261 * 123.14387 * 179.97438 * 6 5 4 8 8 O 1.21630 * 120.00319 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00241 * 0.02562 * 7 6 5 10 10 C 1.47026 * 125.64285 * 359.97438 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.07596 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 C 1.53007 * 111.01067 * 82.52458 * 12 11 10 14 14 C 1.53000 * 111.11787 * 206.45980 * 12 11 10 15 15 N 1.46496 * 109.47134 * 173.55556 * 14 12 11 16 16 C 1.36933 * 120.00449 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99734 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00600 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00265 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46766 * 60.00746 * 20 18 16 22 22 H 1.48498 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47494 * 300.00464 * 20 18 16 24 24 C 1.47419 * 125.65139 * 179.97438 * 9 7 6 25 25 C 1.35211 * 113.71518 * 0.25905 * 6 5 4 26 26 S 1.70767 * 124.71851 * 269.95717 * 4 3 2 27 27 H 1.08999 * 109.47650 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46853 * 299.99614 * 1 2 3 29 29 H 1.08994 * 109.47836 * 59.99642 * 1 2 3 30 30 H 1.08997 * 109.47456 * 60.00402 * 3 2 1 31 31 H 1.09003 * 109.47139 * 300.00151 * 3 2 1 32 32 H 1.08998 * 109.88266 * 300.48971 * 10 9 7 33 33 H 1.09000 * 109.88221 * 61.65788 * 10 9 7 34 34 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 35 35 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 36 36 H 1.08997 * 109.46961 * 306.50030 * 13 12 11 37 37 H 1.09003 * 109.46792 * 66.50328 * 13 12 11 38 38 H 1.08997 * 109.46833 * 186.50296 * 13 12 11 39 39 H 1.09001 * 109.47578 * 293.56064 * 14 12 11 40 40 H 1.09003 * 109.46933 * 53.55793 * 14 12 11 41 41 H 0.97006 * 119.99700 * 0.02562 * 15 14 12 42 42 H 0.96999 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09002 * 110.36926 * 274.69484 * 24 9 7 44 44 H 1.08995 * 110.36556 * 36.90768 * 24 9 7 45 45 H 1.07997 * 125.58427 * 179.73795 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2425 1.1288 -1.0583 6 6 5.5578 1.0251 -0.8511 7 6 6.5415 0.9470 -1.9442 8 8 7.7272 0.8530 -1.6899 9 7 6.1279 0.9796 -3.2266 10 6 4.7317 1.0897 -3.6740 11 6 4.7416 1.0612 -5.2169 12 6 6.0932 0.3667 -5.5444 13 6 5.9627 -1.1554 -5.4591 14 6 6.6139 0.7941 -6.9181 15 7 7.9554 0.2430 -7.1250 16 6 8.6268 0.4949 -8.2915 17 1 8.1674 1.1003 -9.0590 18 6 9.8981 -0.0269 -8.4873 19 7 10.4581 -0.7643 -7.5519 20 14 10.8136 0.3162 -10.0790 21 1 10.9988 1.7811 -10.2376 22 1 12.1404 -0.3495 -10.0403 23 1 10.0293 -0.2105 -11.2247 24 6 7.0005 0.9108 -4.4128 25 6 5.9014 0.9924 0.4563 26 16 4.4827 1.1103 1.4026 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 4.1525 0.2493 -3.2914 33 1 4.3030 2.0284 -3.3232 34 1 3.9050 0.4750 -5.5971 35 1 4.7170 2.0730 -5.6215 36 1 5.5498 -1.4309 -4.4887 37 1 5.2999 -1.5081 -6.2494 38 1 6.9454 -1.6115 -5.5786 39 1 5.9442 0.4207 -7.6929 40 1 6.6564 1.8821 -6.9681 41 1 8.3680 -0.3005 -6.4355 42 1 11.3466 -1.1286 -7.6885 43 1 7.3722 1.9031 -4.6684 44 1 7.8322 0.2297 -4.2329 45 1 6.9075 0.9080 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754712499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -12.846948 kcal Electronic energy + Delta-G solvation = -27218.862464 eV Core-core repulsion = 23364.148464 eV Total energy + Delta-G solvation = -3854.714000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.79225 -39.39529 -38.27643 -37.60447 -34.72703 -32.63333 -31.89963 -30.41508 -29.02697 -28.55235 -27.20454 -26.38529 -25.83532 -24.27650 -23.25380 -21.96160 -21.01945 -19.73784 -18.77052 -18.39870 -17.09356 -17.02855 -16.43590 -16.20731 -16.14332 -15.83259 -15.35831 -14.76618 -14.53030 -14.27409 -14.01517 -13.80697 -13.48088 -13.23846 -13.08254 -12.79482 -12.72926 -12.59190 -12.29716 -11.98996 -11.97034 -11.93941 -11.56207 -11.52132 -10.97707 -10.77023 -10.47858 -10.38681 -10.29801 -10.26461 -10.13409 -9.98989 -9.91627 -9.87262 -9.56146 -9.28053 -8.82076 -8.38817 -6.86336 -5.70128 -2.99055 0.17533 0.87567 1.27616 1.72425 3.05253 3.21661 3.38674 3.48298 3.52341 3.53774 3.84633 4.37138 4.55299 4.65094 4.77394 4.80807 4.85960 4.87675 4.93925 4.97096 5.05622 5.14370 5.23076 5.44360 5.52297 5.59268 5.65629 5.76590 5.91406 5.99891 6.13779 6.18633 6.23827 6.28701 6.37060 6.46781 6.52314 6.60365 6.69530 6.80080 6.90200 7.13192 7.65254 7.74630 8.22097 8.48290 9.59372 10.17066 10.51675 11.52540 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.002435 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.782681 B =11495.394422 C =12444.240096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.143 3.857 4 C 0.011 3.989 5 N -0.416 5.416 6 C 0.018 3.982 7 C 0.601 3.399 8 O -0.533 6.533 9 N -0.597 5.597 10 C 0.119 3.881 11 C -0.126 4.126 12 C -0.078 4.078 13 C -0.128 4.128 14 C 0.171 3.829 15 N -0.731 5.731 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.121 3.879 25 C -0.221 4.221 26 S 0.230 5.770 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.921 4.858 20.761 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.269 4.269 5 N -0.134 5.134 6 C -0.117 4.117 7 C 0.386 3.614 8 O -0.411 6.411 9 N -0.329 5.329 10 C -0.004 4.004 11 C -0.164 4.164 12 C -0.079 4.079 13 C -0.186 4.186 14 C 0.043 3.957 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C 0.000 4.000 25 C -0.363 4.363 26 S 0.486 5.514 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -22.581 4.732 21.330 31.420 hybrid contribution 1.159 0.146 -1.410 1.832 sum -21.421 4.878 19.920 29.655 Atomic orbital electron populations 1.22811 0.79877 1.03421 1.00360 1.87971 1.20371 1.26241 1.95520 1.20749 0.84260 0.86130 1.02582 1.26636 1.00757 1.07304 0.92153 1.67071 1.03192 1.12393 1.30700 1.20430 0.89839 1.07911 0.93532 1.16627 0.86404 0.77674 0.80710 1.90854 1.16034 1.51115 1.83056 1.48292 1.09403 1.70389 1.04793 1.22031 0.82174 1.02117 0.94072 1.22837 0.97926 1.01512 0.94145 1.22011 0.93936 0.96152 0.95792 1.21662 1.02842 0.93638 1.00419 1.20583 0.88138 0.95948 0.91072 1.42373 1.13526 1.61864 1.19772 1.19160 0.97318 1.26267 0.94360 0.91274 1.24739 0.97563 1.00537 0.98109 1.69652 1.16161 1.38778 1.33472 0.86272 0.79091 0.77605 0.83223 1.21327 1.21751 1.21343 1.22388 0.93337 1.02001 0.82279 1.26703 1.06283 1.06447 0.96844 1.82759 0.94693 1.62965 1.10950 0.89076 0.93731 0.93457 0.90818 0.89849 0.90917 0.91317 0.90092 0.90535 0.93614 0.92501 0.91353 0.95786 0.96124 0.78079 0.93454 0.90803 0.89691 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.21 10.69 -35.23 -0.38 -3.58 16 3 C 0.14 0.98 6.51 36.01 0.23 1.21 16 4 C 0.01 0.10 6.97 -13.61 -0.09 0.01 16 5 N -0.42 -5.13 7.66 -8.51 -0.07 -5.20 16 6 C 0.02 0.25 6.62 -84.53 -0.56 -0.30 16 7 C 0.60 10.37 7.83 -12.59 -0.10 10.27 16 8 O -0.53 -10.89 16.97 5.25 0.09 -10.80 16 9 N -0.60 -9.79 3.31 -171.84 -0.57 -10.36 16 10 C 0.12 1.59 5.08 -3.06 -0.02 1.58 16 11 C -0.13 -1.65 5.93 -24.74 -0.15 -1.79 16 12 C -0.08 -1.30 0.63 -152.19 -0.10 -1.40 16 13 C -0.13 -2.15 8.43 37.16 0.31 -1.84 16 14 C 0.17 3.43 5.24 -4.04 -0.02 3.41 16 15 N -0.73 -18.61 5.17 -59.91 -0.31 -18.92 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 20 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 C 0.12 2.22 5.32 -2.53 -0.01 2.20 16 25 C -0.22 -2.46 10.62 29.65 0.31 -2.15 16 26 S 0.23 1.79 22.92 -107.50 -2.46 -0.67 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.14 8.14 -51.92 -0.42 -0.29 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.98 7.52 -51.93 -0.39 0.59 16 33 H 0.07 0.86 7.64 -51.93 -0.40 0.47 16 34 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 36 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.32 7.20 -51.93 -0.37 0.95 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.38 10.39 6.31 -40.82 -0.26 10.13 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 44 H 0.08 1.78 7.77 -51.93 -0.40 1.38 16 45 H 0.19 1.96 8.03 -52.49 -0.42 1.54 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -34.91 383.95 -8.35 -43.26 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.83 Total: 5.74 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 0.68 Total: 5.04 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.22 Total: -62.59 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.29 Total: -14.38 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.46 Total: -0.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.91 -8.35 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754712499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.415 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds