Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99913 * 2 1 4 4 C 1.50704 * 109.46901 * 180.02562 * 3 2 1 5 5 N 1.28645 * 124.71990 * 90.00687 * 4 3 2 6 6 C 1.33562 * 115.76764 * 179.97438 * 5 4 3 7 7 C 1.47261 * 123.14387 * 179.97438 * 6 5 4 8 8 O 1.21630 * 120.00319 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00241 * 0.02562 * 7 6 5 10 10 C 1.47026 * 125.64285 * 359.97438 * 9 7 6 11 11 C 1.54321 * 107.26791 * 181.07596 * 10 9 7 12 12 C 1.55448 * 102.96961 * 22.19024 * 11 10 9 13 13 C 1.53007 * 111.01067 * 82.52458 * 12 11 10 14 14 C 1.53000 * 111.11787 * 206.45980 * 12 11 10 15 15 N 1.46496 * 109.47134 * 173.55556 * 14 12 11 16 16 C 1.36933 * 120.00449 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99734 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00600 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00265 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46766 * 60.00746 * 20 18 16 22 22 H 1.48498 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47494 * 300.00464 * 20 18 16 24 24 C 1.47419 * 125.65139 * 179.97438 * 9 7 6 25 25 C 1.35211 * 113.71518 * 0.25905 * 6 5 4 26 26 S 1.70767 * 124.71851 * 269.95717 * 4 3 2 27 27 H 1.08999 * 109.47650 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46853 * 299.99614 * 1 2 3 29 29 H 1.08994 * 109.47836 * 59.99642 * 1 2 3 30 30 H 1.08997 * 109.47456 * 60.00402 * 3 2 1 31 31 H 1.09003 * 109.47139 * 300.00151 * 3 2 1 32 32 H 1.08998 * 109.88266 * 300.48971 * 10 9 7 33 33 H 1.09000 * 109.88221 * 61.65788 * 10 9 7 34 34 H 1.08998 * 110.71927 * 140.55469 * 11 10 9 35 35 H 1.08998 * 110.72073 * 263.64892 * 11 10 9 36 36 H 1.08997 * 109.46961 * 306.50030 * 13 12 11 37 37 H 1.09003 * 109.46792 * 66.50328 * 13 12 11 38 38 H 1.08997 * 109.46833 * 186.50296 * 13 12 11 39 39 H 1.09001 * 109.47578 * 293.56064 * 14 12 11 40 40 H 1.09003 * 109.46933 * 53.55793 * 14 12 11 41 41 H 0.97006 * 119.99700 * 0.02562 * 15 14 12 42 42 H 0.96999 * 120.00131 * 180.02562 * 19 18 16 43 43 H 1.09002 * 110.36926 * 274.69484 * 24 9 7 44 44 H 1.08995 * 110.36556 * 36.90768 * 24 9 7 45 45 H 1.07997 * 125.58427 * 179.73795 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2425 1.1288 -1.0583 6 6 5.5578 1.0251 -0.8511 7 6 6.5415 0.9470 -1.9442 8 8 7.7272 0.8530 -1.6899 9 7 6.1279 0.9796 -3.2266 10 6 4.7317 1.0897 -3.6740 11 6 4.7416 1.0612 -5.2169 12 6 6.0932 0.3667 -5.5444 13 6 5.9627 -1.1554 -5.4591 14 6 6.6139 0.7941 -6.9181 15 7 7.9554 0.2430 -7.1250 16 6 8.6268 0.4949 -8.2915 17 1 8.1674 1.1003 -9.0590 18 6 9.8981 -0.0269 -8.4873 19 7 10.4581 -0.7643 -7.5519 20 14 10.8136 0.3162 -10.0790 21 1 10.9988 1.7811 -10.2376 22 1 12.1404 -0.3495 -10.0403 23 1 10.0293 -0.2105 -11.2247 24 6 7.0005 0.9108 -4.4128 25 6 5.9014 0.9924 0.4563 26 16 4.4827 1.1103 1.4026 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8463 -0.8900 32 1 4.1525 0.2493 -3.2914 33 1 4.3030 2.0284 -3.3232 34 1 3.9050 0.4750 -5.5971 35 1 4.7170 2.0730 -5.6215 36 1 5.5498 -1.4309 -4.4887 37 1 5.2999 -1.5081 -6.2494 38 1 6.9454 -1.6115 -5.5786 39 1 5.9442 0.4207 -7.6929 40 1 6.6564 1.8821 -6.9681 41 1 8.3680 -0.3005 -6.4355 42 1 11.3466 -1.1286 -7.6885 43 1 7.3722 1.9031 -4.6684 44 1 7.8322 0.2297 -4.2329 45 1 6.9075 0.9080 0.8397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754712499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = -37.892908 kcal Electronic energy + Delta-G solvation = -27219.948539 eV Core-core repulsion = 23364.148464 eV Total energy + Delta-G solvation = -3855.800074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87119 -40.48842 -39.18258 -38.57516 -36.50414 -34.36471 -32.70268 -32.21392 -30.39237 -29.17583 -28.47005 -27.59038 -26.82684 -25.66745 -24.64472 -23.44185 -21.91710 -20.67588 -20.22022 -19.64917 -18.88418 -17.64319 -17.38548 -17.29415 -17.04337 -16.64795 -16.58491 -16.30548 -15.79465 -15.56011 -15.31965 -15.04809 -14.90001 -14.76702 -14.35650 -14.00190 -13.66625 -13.59465 -13.42675 -13.12845 -13.09235 -13.00196 -12.91894 -12.80235 -12.64516 -12.32108 -12.22163 -12.04583 -11.74663 -11.54596 -11.47824 -11.32928 -10.92238 -10.86385 -10.77891 -10.63037 -10.10329 -9.68595 -8.97979 -7.92992 -5.22008 -0.63895 0.15975 0.49180 0.75045 1.46524 1.50383 1.56357 1.89112 2.13211 2.56701 2.62200 3.14300 3.37122 3.42080 3.60119 3.71247 3.83814 3.97280 4.13542 4.15256 4.21498 4.29722 4.35939 4.36840 4.45042 4.59011 4.60969 4.65900 4.70765 4.74641 4.78294 4.93118 4.95231 4.96243 5.06293 5.09515 5.13541 5.27612 5.28471 5.44504 5.50862 6.12936 6.27261 6.28153 6.42199 6.93106 7.34442 8.11140 8.33453 9.30637 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.002435 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.782681 B =11495.394422 C =12444.240096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.140 3.860 4 C -0.002 4.002 5 N -0.436 5.436 6 C -0.010 4.010 7 C 0.592 3.408 8 O -0.582 6.582 9 N -0.598 5.598 10 C 0.125 3.875 11 C -0.112 4.112 12 C -0.071 4.071 13 C -0.120 4.120 14 C 0.170 3.830 15 N -0.744 5.744 16 C -0.242 4.242 17 H 0.080 0.920 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.275 1.275 24 C 0.127 3.873 25 C -0.236 4.236 26 S 0.329 5.671 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.036 0.964 40 H 0.026 0.974 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.521 5.975 21.556 34.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.061 3.939 4 C -0.281 4.281 5 N -0.154 5.154 6 C -0.145 4.145 7 C 0.379 3.621 8 O -0.463 6.463 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.177 4.177 14 C 0.043 3.957 15 N -0.387 5.387 16 C -0.373 4.373 17 H 0.098 0.902 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.225 1.225 23 H -0.201 1.201 24 C 0.004 3.996 25 C -0.379 4.379 26 S 0.587 5.413 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -26.280 5.881 22.120 34.850 hybrid contribution 2.155 -0.176 -1.500 2.632 sum -24.125 5.705 20.619 32.245 Atomic orbital electron populations 1.22983 0.78184 1.04079 1.01666 1.87916 1.22268 1.27118 1.95809 1.20983 0.82301 0.86047 1.04594 1.27250 1.02278 1.05941 0.92636 1.67017 1.02349 1.13743 1.32287 1.19992 0.90247 1.11280 0.93020 1.17252 0.86654 0.76593 0.81597 1.90805 1.18251 1.53380 1.83894 1.48380 1.10330 1.69973 1.04197 1.22145 0.80301 1.03065 0.94128 1.22856 0.96076 1.02245 0.93816 1.21886 0.95730 0.96362 0.93195 1.21567 1.01138 0.93444 1.01564 1.20753 0.85838 0.95842 0.93255 1.42609 1.15458 1.61888 1.18769 1.19630 0.97492 1.25077 0.95142 0.90249 1.25613 0.98829 1.01191 1.01563 1.69842 1.16237 1.40630 1.35695 0.85178 0.77294 0.77606 0.79481 1.20403 1.22518 1.20083 1.22122 0.93191 1.00160 0.84128 1.26971 1.08392 1.05438 0.97071 1.82402 0.90991 1.60025 1.07931 0.88854 0.91798 0.92755 0.87509 0.89152 0.90432 0.89887 0.87261 0.89157 0.92581 0.90859 0.94963 0.94603 0.95659 0.79529 0.94172 0.92275 0.93706 0.79049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.75 10.69 -148.98 -1.59 -7.34 16 3 C 0.14 1.45 6.51 71.24 0.46 1.91 16 4 C 0.00 -0.04 6.97 88.58 0.62 0.58 16 5 N -0.44 -10.16 7.66 -180.83 -1.38 -11.55 16 6 C -0.01 -0.27 6.62 40.56 0.27 0.00 16 7 C 0.59 21.44 7.83 86.61 0.68 22.12 16 8 O -0.58 -25.62 16.97 -4.13 -0.07 -25.69 16 9 N -0.60 -20.18 3.31 -815.83 -2.70 -22.89 16 10 C 0.13 3.18 5.08 86.73 0.44 3.62 16 11 C -0.11 -2.66 5.93 31.88 0.19 -2.47 16 12 C -0.07 -2.35 0.63 -50.68 -0.03 -2.39 16 13 C -0.12 -4.04 8.43 71.98 0.61 -3.43 16 14 C 0.17 6.78 5.24 86.38 0.45 7.23 16 15 N -0.74 -38.94 5.17 -343.46 -1.78 -40.72 16 16 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.97 -62.44 13.06 21.65 0.28 -62.15 16 20 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.13 4.88 5.32 86.86 0.46 5.35 16 25 C -0.24 -5.13 10.62 67.12 0.71 -4.42 16 26 S 0.33 4.21 22.92 -56.49 -1.29 2.91 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.94 7.52 -2.39 -0.02 1.92 16 33 H 0.08 1.92 7.64 -2.39 -0.02 1.90 16 34 H 0.11 2.06 8.05 -2.39 -0.02 2.04 16 35 H 0.09 1.96 8.03 -2.39 -0.02 1.94 16 36 H 0.06 1.75 7.82 -2.39 -0.02 1.73 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 41 H 0.37 21.23 6.31 -92.70 -0.58 20.64 16 42 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.06 2.40 8.04 -2.39 -0.02 2.38 16 44 H 0.04 2.06 7.77 -2.39 -0.02 2.04 16 45 H 0.19 4.01 8.03 -2.91 -0.02 3.99 16 Total: -1.00 -79.78 383.95 1.32 -78.47 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.42 Total: 27.05 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 7.41 Total: 12.25 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -5.58 Total: -137.30 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.66 Total: -33.03 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.29 Total: 2.91 kcal Total: -79.78 1.32 -78.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754712499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.573 kcal (2) G-P(sol) polarization free energy of solvation -79.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds