Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00022 * 2 1 4 4 C 1.50702 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.28639 * 124.71925 * 89.99990 * 4 3 2 6 6 C 1.33566 * 115.76165 * 180.02562 * 5 4 3 7 7 C 1.47273 * 123.13938 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00034 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99935 * 0.02562 * 7 6 5 10 10 C 1.47481 * 127.03334 * 0.02562 * 9 7 6 11 11 C 1.54000 * 107.08380 * 154.51546 * 10 9 7 12 12 C 1.54614 * 105.04374 * 1.30616 * 11 10 9 13 13 C 1.52999 * 110.73931 * 263.51000 * 12 11 10 14 14 C 1.53003 * 110.74012 * 140.18682 * 12 11 10 15 15 N 1.46499 * 109.47422 * 180.02562 * 14 12 11 16 16 C 1.36934 * 119.99964 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99793 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99909 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99836 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47104 * 90.00560 * 20 18 16 22 22 H 1.48503 * 109.47104 * 209.99775 * 20 18 16 23 23 H 1.48497 * 109.47623 * 330.00373 * 20 18 16 24 24 C 1.48107 * 127.03175 * 179.70938 * 9 7 6 25 25 C 1.35198 * 113.72165 * 0.02562 * 6 5 4 26 26 S 1.70772 * 124.71559 * 270.02207 * 4 3 2 27 27 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47238 * 300.00163 * 1 2 3 29 29 H 1.09001 * 109.47498 * 59.99894 * 1 2 3 30 30 H 1.09001 * 109.47312 * 60.00199 * 3 2 1 31 31 H 1.08999 * 109.47052 * 299.99834 * 3 2 1 32 32 H 1.08997 * 109.91387 * 273.88098 * 10 9 7 33 33 H 1.09001 * 109.91512 * 35.15439 * 10 9 7 34 34 H 1.08998 * 110.32630 * 120.20037 * 11 10 9 35 35 H 1.08999 * 110.32877 * 242.30924 * 11 10 9 36 36 H 1.08997 * 109.47319 * 60.00165 * 13 12 11 37 37 H 1.09003 * 109.47064 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47255 * 299.99865 * 13 12 11 39 39 H 1.09002 * 109.47038 * 299.99774 * 14 12 11 40 40 H 1.09004 * 109.47307 * 59.99749 * 14 12 11 41 41 H 0.97002 * 119.99340 * 359.97438 * 15 14 12 42 42 H 0.97002 * 119.99628 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.66624 * 337.76962 * 24 9 7 44 44 H 1.09002 * 110.66534 * 100.89076 * 24 9 7 45 45 H 1.07999 * 125.59256 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2425 1.1288 -1.0583 6 6 5.5578 1.0240 -0.8509 7 6 6.5416 0.9466 -1.9441 8 8 7.7271 0.8516 -1.6897 9 7 6.1281 0.9811 -3.2265 10 6 4.7390 1.0932 -3.7092 11 6 4.7973 1.7253 -5.1122 12 6 6.3030 1.9287 -5.3986 13 6 6.7301 3.3589 -5.0623 14 6 6.6276 1.5933 -6.8556 15 7 8.0587 1.7946 -7.0960 16 6 8.5846 1.5557 -8.3376 17 1 7.9446 1.2186 -9.1395 18 6 9.9405 1.7470 -8.5654 19 7 10.4462 1.5170 -9.7586 20 14 11.0474 2.3309 -7.1786 21 1 11.5892 1.1560 -6.4496 22 1 12.1693 3.1245 -7.7414 23 1 10.2639 3.1762 -6.2423 24 6 6.9763 0.9208 -4.4391 25 6 5.9017 0.9955 0.4563 26 16 4.4826 1.1088 1.4027 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.2849 0.1040 -3.7662 33 1 4.1631 1.7307 -3.0384 34 1 4.3592 1.0523 -5.8492 35 1 4.2764 2.6828 -5.1181 36 1 6.5430 3.5552 -4.0066 37 1 7.7929 3.4795 -5.2719 38 1 6.1585 4.0611 -5.6692 39 1 6.3688 0.5534 -7.0554 40 1 6.0530 2.2438 -7.5150 41 1 8.6334 2.0978 -6.3758 42 1 11.3937 1.6503 -9.9177 43 1 7.9962 1.2306 -4.2110 44 1 6.9644 -0.0815 -4.8674 45 1 6.9080 0.9147 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754712500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -5.667424 kcal Electronic energy + Delta-G solvation = -27322.425329 eV Core-core repulsion = 23468.022656 eV Total energy + Delta-G solvation = -3854.402673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89170 -39.50811 -38.35341 -37.73108 -34.93596 -32.66900 -31.97927 -30.75702 -29.31138 -28.62732 -27.33967 -26.47066 -26.12367 -24.34171 -23.28933 -21.71734 -21.12040 -19.84701 -18.96494 -18.57627 -17.47931 -17.14058 -16.53353 -16.24788 -16.19981 -15.93480 -15.44744 -14.91415 -14.45780 -14.37133 -14.24127 -13.85877 -13.68719 -13.30170 -13.15969 -13.05534 -12.76372 -12.55432 -12.38375 -12.19276 -12.11067 -11.99200 -11.68938 -11.61413 -11.29514 -10.84808 -10.53663 -10.50179 -10.39256 -10.33612 -10.16921 -10.06644 -9.98883 -9.90818 -9.52048 -9.36899 -8.86086 -8.56284 -7.18782 -5.72982 -3.08033 0.09353 0.79416 1.19387 1.61900 2.93850 3.10313 3.28199 3.42572 3.46464 3.50708 3.77219 4.29720 4.49168 4.63800 4.70194 4.74980 4.77744 4.82078 4.86225 4.89535 4.96658 5.01378 5.18946 5.30389 5.42322 5.46956 5.58335 5.62221 5.73189 5.83494 5.96252 5.97868 6.06543 6.10750 6.22684 6.29534 6.46881 6.47670 6.55457 6.68467 6.75268 7.03232 7.55027 8.03049 8.08866 8.46136 9.25195 9.97859 10.17537 11.45441 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002639 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.747674 B =10607.754966 C =11621.208998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.012 3.988 5 N -0.417 5.417 6 C 0.018 3.982 7 C 0.606 3.394 8 O -0.536 6.536 9 N -0.600 5.600 10 C 0.105 3.895 11 C -0.124 4.124 12 C -0.084 4.084 13 C -0.130 4.130 14 C 0.174 3.826 15 N -0.755 5.755 16 C -0.242 4.242 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.117 3.883 25 C -0.221 4.221 26 S 0.234 5.766 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.032 0.968 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.972 0.634 26.132 34.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.062 3.938 4 C -0.267 4.267 5 N -0.134 5.134 6 C -0.117 4.117 7 C 0.392 3.608 8 O -0.414 6.414 9 N -0.331 5.331 10 C -0.018 4.018 11 C -0.163 4.163 12 C -0.085 4.085 13 C -0.188 4.188 14 C 0.047 3.953 15 N -0.401 5.401 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.583 5.583 20 Si 0.711 3.289 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.005 4.005 25 C -0.363 4.363 26 S 0.491 5.509 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -22.666 0.378 26.646 34.984 hybrid contribution 1.394 0.516 0.088 1.489 sum -21.272 0.894 26.733 34.175 Atomic orbital electron populations 1.22818 0.79809 1.03444 1.00410 1.87968 1.20427 1.26192 1.95532 1.20761 0.84190 0.86175 1.02669 1.26676 1.00825 1.07039 0.92187 1.67044 1.03196 1.12660 1.30549 1.20395 0.89818 1.08058 0.93449 1.16592 0.86354 0.77348 0.80524 1.90842 1.16092 1.51423 1.83007 1.48551 1.09783 1.70273 1.04506 1.22318 0.82681 1.01426 0.95361 1.22619 0.96148 1.01567 0.95967 1.21860 0.94385 0.95708 0.96547 1.21719 1.02289 0.94630 1.00119 1.20608 0.86387 0.98179 0.90161 1.42770 1.03814 1.82592 1.10947 1.19043 0.92758 1.37811 0.87582 0.89181 1.24651 0.96608 1.01592 0.96219 1.69700 1.12758 1.55394 1.20401 0.86618 0.81067 0.78842 0.82420 1.20941 1.21717 1.20321 1.22595 0.95447 0.99815 0.82624 1.26702 1.06346 1.06453 0.96845 1.82793 0.94540 1.62788 1.10817 0.89055 0.93698 0.93418 0.90754 0.89795 0.91701 0.88704 0.90175 0.90588 0.93528 0.91922 0.92264 0.95141 0.94979 0.80499 0.93100 0.89723 0.90115 0.79061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.00 10.69 -35.23 -0.38 -3.37 16 3 C 0.14 0.90 6.51 36.01 0.23 1.13 16 4 C 0.01 0.10 6.97 -13.61 -0.09 0.01 16 5 N -0.42 -4.83 7.45 -8.51 -0.06 -4.90 16 6 C 0.02 0.24 6.63 -84.52 -0.56 -0.32 16 7 C 0.61 9.83 7.87 -12.59 -0.10 9.74 16 8 O -0.54 -10.30 16.92 5.26 0.09 -10.22 16 9 N -0.60 -9.17 3.19 -171.31 -0.55 -9.72 16 10 C 0.11 1.31 6.16 -2.98 -0.02 1.29 16 11 C -0.12 -1.52 6.09 -25.36 -0.15 -1.68 16 12 C -0.08 -1.31 0.65 -152.82 -0.10 -1.41 16 13 C -0.13 -2.07 8.31 37.16 0.31 -1.76 16 14 C 0.17 3.32 5.11 -4.04 -0.02 3.30 16 15 N -0.75 -18.07 4.96 -59.91 -0.30 -18.37 16 16 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 18 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 20 Si 0.88 22.90 27.73 -169.99 -4.71 18.18 16 21 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 24 C 0.12 1.96 5.65 -2.32 -0.01 1.95 16 25 C -0.22 -2.31 10.62 29.65 0.31 -1.99 16 26 S 0.23 1.68 22.92 -107.50 -2.46 -0.78 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.12 8.14 -51.92 -0.42 -0.30 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.13 6.01 -51.93 -0.31 0.82 16 34 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 35 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 37 H 0.06 1.14 6.69 -51.93 -0.35 0.80 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.36 8.62 4.07 -40.82 -0.17 8.46 16 42 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 43 H 0.08 1.60 7.75 -51.93 -0.40 1.20 16 44 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 45 H 0.19 1.82 8.03 -52.49 -0.42 1.39 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -35.68 380.05 -7.91 -43.59 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.69 Total: 4.42 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.66 Total: 4.47 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.13 Total: -62.03 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.29 Total: -13.59 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.71 Total: 18.18 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.46 Total: -0.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.68 -7.91 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754712500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.924 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds