Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00022 * 2 1 4 4 C 1.50702 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.28639 * 124.71925 * 89.99990 * 4 3 2 6 6 C 1.33566 * 115.76165 * 180.02562 * 5 4 3 7 7 C 1.47273 * 123.13938 * 180.02562 * 6 5 4 8 8 O 1.21623 * 120.00034 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99935 * 0.02562 * 7 6 5 10 10 C 1.47481 * 127.03334 * 0.02562 * 9 7 6 11 11 C 1.54000 * 107.08380 * 154.51546 * 10 9 7 12 12 C 1.54614 * 105.04374 * 1.30616 * 11 10 9 13 13 C 1.52999 * 110.73931 * 263.51000 * 12 11 10 14 14 C 1.53003 * 110.74012 * 140.18682 * 12 11 10 15 15 N 1.46499 * 109.47422 * 180.02562 * 14 12 11 16 16 C 1.36934 * 119.99964 * 180.02562 * 15 14 12 17 17 H 1.07998 * 120.00375 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99793 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99909 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99836 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47104 * 90.00560 * 20 18 16 22 22 H 1.48503 * 109.47104 * 209.99775 * 20 18 16 23 23 H 1.48497 * 109.47623 * 330.00373 * 20 18 16 24 24 C 1.48107 * 127.03175 * 179.70938 * 9 7 6 25 25 C 1.35198 * 113.72165 * 0.02562 * 6 5 4 26 26 S 1.70772 * 124.71559 * 270.02207 * 4 3 2 27 27 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47238 * 300.00163 * 1 2 3 29 29 H 1.09001 * 109.47498 * 59.99894 * 1 2 3 30 30 H 1.09001 * 109.47312 * 60.00199 * 3 2 1 31 31 H 1.08999 * 109.47052 * 299.99834 * 3 2 1 32 32 H 1.08997 * 109.91387 * 273.88098 * 10 9 7 33 33 H 1.09001 * 109.91512 * 35.15439 * 10 9 7 34 34 H 1.08998 * 110.32630 * 120.20037 * 11 10 9 35 35 H 1.08999 * 110.32877 * 242.30924 * 11 10 9 36 36 H 1.08997 * 109.47319 * 60.00165 * 13 12 11 37 37 H 1.09003 * 109.47064 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47255 * 299.99865 * 13 12 11 39 39 H 1.09002 * 109.47038 * 299.99774 * 14 12 11 40 40 H 1.09004 * 109.47307 * 59.99749 * 14 12 11 41 41 H 0.97002 * 119.99340 * 359.97438 * 15 14 12 42 42 H 0.97002 * 119.99628 * 180.02562 * 19 18 16 43 43 H 1.08998 * 110.66624 * 337.76962 * 24 9 7 44 44 H 1.09002 * 110.66534 * 100.89076 * 24 9 7 45 45 H 1.07999 * 125.59256 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2425 1.1288 -1.0583 6 6 5.5578 1.0240 -0.8509 7 6 6.5416 0.9466 -1.9441 8 8 7.7271 0.8516 -1.6897 9 7 6.1281 0.9811 -3.2265 10 6 4.7390 1.0932 -3.7092 11 6 4.7973 1.7253 -5.1122 12 6 6.3030 1.9287 -5.3986 13 6 6.7301 3.3589 -5.0623 14 6 6.6276 1.5933 -6.8556 15 7 8.0587 1.7946 -7.0960 16 6 8.5846 1.5557 -8.3376 17 1 7.9446 1.2186 -9.1395 18 6 9.9405 1.7470 -8.5654 19 7 10.4462 1.5170 -9.7586 20 14 11.0474 2.3309 -7.1786 21 1 11.5892 1.1560 -6.4496 22 1 12.1693 3.1245 -7.7414 23 1 10.2639 3.1762 -6.2423 24 6 6.9763 0.9208 -4.4391 25 6 5.9017 0.9955 0.4563 26 16 4.4826 1.1088 1.4027 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.2849 0.1040 -3.7662 33 1 4.1631 1.7307 -3.0384 34 1 4.3592 1.0523 -5.8492 35 1 4.2764 2.6828 -5.1181 36 1 6.5430 3.5552 -4.0066 37 1 7.7929 3.4795 -5.2719 38 1 6.1585 4.0611 -5.6692 39 1 6.3688 0.5534 -7.0554 40 1 6.0530 2.2438 -7.5150 41 1 8.6334 2.0978 -6.3758 42 1 11.3937 1.6503 -9.9177 43 1 7.9962 1.2306 -4.2110 44 1 6.9644 -0.0815 -4.8674 45 1 6.9080 0.9147 0.8399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754712500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -31.300979 kcal Electronic energy + Delta-G solvation = -27323.536883 eV Core-core repulsion = 23468.022656 eV Total energy + Delta-G solvation = -3855.514227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87610 -40.52104 -39.21894 -38.58679 -36.65864 -34.39488 -32.81548 -32.51407 -30.52797 -29.19320 -28.48914 -27.83148 -26.84195 -25.55536 -24.54778 -23.33278 -21.94547 -20.70951 -20.47219 -19.82977 -19.10591 -17.62495 -17.39229 -17.25086 -17.11337 -16.65900 -16.57601 -16.29506 -15.99202 -15.64496 -15.23273 -15.12742 -14.96215 -14.70072 -14.48415 -14.05559 -13.83689 -13.65146 -13.56566 -13.32840 -13.14124 -13.08107 -12.92701 -12.86767 -12.62878 -12.33200 -12.22795 -11.96308 -11.74539 -11.64173 -11.53447 -11.34971 -11.00887 -10.82337 -10.78080 -10.62644 -10.12310 -9.72637 -9.29283 -8.04477 -5.35872 -0.64575 0.14800 0.48114 0.72905 1.33306 1.36094 1.41396 1.85652 2.12147 2.44488 2.60434 3.12702 3.27330 3.36365 3.60001 3.67883 3.76793 3.87359 4.00157 4.13311 4.20449 4.28459 4.30038 4.32175 4.43717 4.53374 4.58198 4.64490 4.68146 4.70607 4.73104 4.90387 4.95475 5.00791 5.03377 5.04177 5.09111 5.26609 5.27425 5.43872 5.75767 6.11587 6.20238 6.25885 6.42069 6.91373 7.06560 7.83823 8.01023 9.17162 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002639 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.747674 B =10607.754966 C =11621.208998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.139 3.861 4 C -0.002 4.002 5 N -0.437 5.437 6 C -0.009 4.009 7 C 0.598 3.402 8 O -0.581 6.581 9 N -0.600 5.600 10 C 0.110 3.890 11 C -0.113 4.113 12 C -0.075 4.075 13 C -0.125 4.125 14 C 0.172 3.828 15 N -0.758 5.758 16 C -0.225 4.225 17 H 0.064 0.936 18 C -0.060 4.060 19 N -0.981 5.981 20 Si 0.941 3.059 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.258 1.258 24 C 0.116 3.884 25 C -0.235 4.235 26 S 0.328 5.672 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.363 0.637 42 H 0.257 0.743 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.997 1.531 29.110 39.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.060 3.940 4 C -0.280 4.280 5 N -0.155 5.155 6 C -0.145 4.145 7 C 0.386 3.614 8 O -0.462 6.462 9 N -0.331 5.331 10 C -0.012 4.012 11 C -0.151 4.151 12 C -0.077 4.077 13 C -0.182 4.182 14 C 0.045 3.955 15 N -0.404 5.404 16 C -0.357 4.357 17 H 0.082 0.918 18 C -0.251 4.251 19 N -0.632 5.632 20 Si 0.770 3.230 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.183 1.183 24 C -0.007 4.007 25 C -0.378 4.378 26 S 0.586 5.414 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.196 0.804 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -25.784 1.284 29.662 39.323 hybrid contribution 2.173 0.173 -0.749 2.305 sum -23.611 1.458 28.913 37.357 Atomic orbital electron populations 1.22983 0.78194 1.04083 1.01657 1.87914 1.22248 1.27101 1.95811 1.20991 0.82383 0.86059 1.04602 1.27250 1.02258 1.05822 0.92699 1.66981 1.02475 1.13951 1.32074 1.20018 0.90201 1.11223 0.93061 1.17148 0.86563 0.76390 0.81324 1.90796 1.18087 1.53563 1.83773 1.48624 1.10603 1.69856 1.03992 1.22430 0.81190 1.02077 0.95477 1.22622 0.93318 1.03180 0.96024 1.21722 0.96951 0.95222 0.93764 1.21666 1.00694 0.94965 1.00905 1.20791 0.83595 0.98380 0.92694 1.42827 1.06005 1.82345 1.09263 1.19063 0.92443 1.35581 0.88566 0.91771 1.25359 0.98261 1.03006 0.98490 1.69853 1.12985 1.57729 1.22639 0.85617 0.79172 0.78461 0.79789 1.21078 1.21827 1.18292 1.22449 0.94624 0.99741 0.83881 1.26968 1.08355 1.05476 0.97046 1.82462 0.91068 1.59981 1.07930 0.88835 0.91824 0.92774 0.87562 0.89145 0.91147 0.87555 0.88763 0.88304 0.92753 0.94668 0.90736 0.94897 0.94236 0.80372 0.93377 0.92547 0.90732 0.78952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.41 -5.30 10.69 -148.98 -1.59 -6.89 16 3 C 0.14 1.28 6.51 71.24 0.46 1.75 16 4 C 0.00 -0.02 6.97 88.58 0.62 0.59 16 5 N -0.44 -9.34 7.45 -180.83 -1.35 -10.68 16 6 C -0.01 -0.24 6.63 40.56 0.27 0.03 16 7 C 0.60 19.66 7.87 86.62 0.68 20.35 16 8 O -0.58 -23.22 16.92 -4.10 -0.07 -23.29 16 9 N -0.60 -18.20 3.19 -814.15 -2.60 -20.80 16 10 C 0.11 2.54 6.16 86.53 0.53 3.07 16 11 C -0.11 -2.46 6.09 31.48 0.19 -2.27 16 12 C -0.08 -2.27 0.65 -51.09 -0.03 -2.30 16 13 C -0.12 -3.81 8.31 71.98 0.60 -3.21 16 14 C 0.17 6.40 5.11 86.38 0.44 6.84 16 15 N -0.76 -36.31 4.96 -343.44 -1.70 -38.01 16 16 C -0.23 -13.09 10.47 84.04 0.88 -12.21 16 17 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 18 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.98 -64.24 13.97 21.65 0.30 -63.93 16 20 Si 0.94 48.16 27.73 68.60 1.90 50.06 16 21 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 23 H -0.26 -12.22 6.52 99.48 0.65 -11.58 16 24 C 0.12 3.91 5.65 86.61 0.49 4.40 16 25 C -0.24 -4.62 10.62 67.12 0.71 -3.91 16 26 S 0.33 3.69 22.92 -56.49 -1.29 2.40 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 29 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 2.28 6.01 -2.39 -0.01 2.26 16 34 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 35 H 0.10 1.77 7.87 -2.39 -0.02 1.75 16 36 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 37 H 0.03 1.25 6.69 -2.39 -0.02 1.24 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.03 1.23 8.10 -2.39 -0.02 1.22 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.36 17.26 4.07 -92.71 -0.38 16.88 16 42 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 43 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 44 H 0.07 2.56 8.01 -2.39 -0.02 2.54 16 45 H 0.19 3.58 8.03 -2.91 -0.02 3.55 16 Total: -1.00 -80.06 380.05 1.73 -78.33 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.57 Total: 21.43 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.56 Total: 11.38 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -5.35 Total: -133.42 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.66 Total: -30.18 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.90 Total: 50.06 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.29 Total: 2.40 kcal Total: -80.06 1.73 -78.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754712500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.033 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds