Wall clock time and date at job start Sat Apr 11 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35962 * 117.00052 * 2 1 4 4 C 1.37572 * 120.82366 * 180.25291 * 3 2 1 5 5 C 1.38036 * 114.24719 * 180.19126 * 4 3 2 6 6 C 1.47121 * 127.76124 * 179.86974 * 5 4 3 7 7 O 1.21629 * 119.99361 * 359.70100 * 6 5 4 8 8 N 1.34768 * 120.00189 * 179.42107 * 6 5 4 9 9 C 1.46498 * 120.00179 * 180.27232 * 8 6 5 10 10 C 1.53002 * 109.47431 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.46056 * 60.02844 * 10 9 8 12 12 C 1.53045 * 109.45649 * 300.06873 * 10 9 8 13 13 C 1.53195 * 109.30762 * 178.61504 * 12 10 9 14 14 N 1.46926 * 108.77512 * 54.63753 * 13 12 10 15 15 C 1.36939 * 120.62864 * 126.41237 * 14 13 12 16 16 H 1.08000 * 120.00012 * 332.60607 * 15 14 13 17 17 C 1.38810 * 119.99930 * 152.60304 * 15 14 13 18 18 N 1.31622 * 120.00182 * 159.33999 * 17 15 14 19 19 Si 1.86807 * 119.99954 * 339.34465 * 17 15 14 20 20 H 1.48505 * 109.46715 * 92.94076 * 19 17 15 21 21 H 1.48503 * 109.46874 * 212.93653 * 19 17 15 22 22 H 1.48494 * 109.47140 * 332.94249 * 19 17 15 23 23 C 1.46923 * 118.73839 * 306.38543 * 14 13 12 24 24 C 1.53045 * 109.46072 * 180.02562 * 10 9 8 25 25 S 1.77230 * 104.48098 * 359.60118 * 5 4 3 26 26 N 1.30354 * 120.82587 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46952 * 59.99415 * 1 2 3 28 28 H 1.08992 * 109.47146 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47014 * 299.99790 * 1 2 3 30 30 H 1.07995 * 122.87872 * 0.02562 * 4 3 2 31 31 H 0.97005 * 120.00161 * 0.28061 * 8 6 5 32 32 H 1.09001 * 109.47289 * 300.00945 * 9 8 6 33 33 H 1.09005 * 109.47018 * 60.00488 * 9 8 6 34 34 H 1.09006 * 109.47259 * 60.00013 * 11 10 9 35 35 H 1.09000 * 109.47393 * 179.97438 * 11 10 9 36 36 H 1.09005 * 109.47480 * 300.00092 * 11 10 9 37 37 H 1.09004 * 109.49683 * 298.56448 * 12 10 9 38 38 H 1.09001 * 109.49687 * 58.66658 * 12 10 9 39 39 H 1.09001 * 109.58670 * 294.84917 * 13 12 10 40 40 H 1.08996 * 109.58250 * 174.42412 * 13 12 10 41 41 H 0.96994 * 120.00148 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58974 * 293.82698 * 23 14 13 43 43 H 1.08997 * 109.70315 * 173.46935 * 23 14 13 44 44 H 1.09001 * 109.49617 * 301.33908 * 24 10 9 45 45 H 1.09003 * 109.49432 * 61.42910 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 -0.0052 5 6 3.9007 2.5967 -0.0003 6 6 5.3050 3.0351 -0.0012 7 8 6.1993 2.2108 -0.0012 8 7 5.6005 4.3500 -0.0076 9 6 6.9989 4.7865 -0.0145 10 6 7.0560 6.3155 -0.0202 11 6 6.3596 6.8562 1.2301 12 6 6.3478 6.8473 -1.2684 13 6 6.3767 8.3789 -1.2532 14 7 7.7699 8.8242 -1.1141 15 6 8.3118 9.7098 -2.0070 16 1 7.9344 9.7565 -3.0178 17 6 9.3461 10.5475 -1.6129 18 7 10.1330 11.0917 -2.5168 19 14 9.6213 10.9024 0.2004 20 1 10.6087 9.9383 0.7491 21 1 10.1378 12.2854 0.3612 22 1 8.3365 10.7654 0.9321 23 6 8.5705 8.3018 0.0017 24 6 8.5171 6.7711 -0.0281 25 16 2.4472 3.6109 -0.0008 26 7 1.3522 2.3148 -0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0644 0.4373 -0.0099 31 1 4.8873 5.0074 -0.0075 32 1 7.5022 4.4078 0.8751 33 1 7.4956 4.4007 -0.9048 34 1 6.8634 6.4771 2.1193 35 1 6.4006 7.9455 1.2264 36 1 5.3191 6.5314 1.2357 37 1 6.8584 6.4826 -2.1597 38 1 5.3136 6.5030 -1.2743 39 1 5.7896 8.7472 -0.4119 40 1 5.9623 8.7614 -2.1859 41 1 10.8560 11.6768 -2.2414 42 1 8.1622 8.6637 0.9453 43 1 9.6037 8.6333 -0.1006 44 1 9.0272 6.3724 0.8488 45 1 9.0068 6.4070 -0.9313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754715807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:25 Heat of formation + Delta-G solvation = -0.267938 kcal Electronic energy + Delta-G solvation = -27163.179621 eV Core-core repulsion = 23309.011088 eV Total energy + Delta-G solvation = -3854.168533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.68589 -40.12512 -38.79597 -36.85689 -35.41145 -33.35552 -31.82616 -31.26393 -30.46322 -28.61126 -27.50989 -27.18462 -25.10876 -23.78180 -22.95270 -21.84171 -21.06906 -20.33648 -19.08452 -18.30597 -18.08950 -16.84739 -16.68845 -16.45184 -16.15649 -15.63055 -15.35714 -15.08549 -14.44229 -14.29351 -14.26113 -13.98986 -13.81883 -13.73603 -13.52373 -13.20223 -12.55716 -12.50512 -12.23242 -12.06355 -11.86446 -11.78997 -11.60634 -11.55970 -11.29274 -10.95290 -10.82272 -10.70324 -10.52486 -10.48673 -10.16713 -10.09841 -9.86546 -9.69858 -9.43926 -9.30051 -8.83711 -8.63138 -6.98033 -5.96245 -3.31945 -0.28918 0.72072 1.09191 1.79687 2.43368 2.72817 2.98177 3.30063 3.46565 3.48672 4.15172 4.51022 4.51139 4.69244 4.75692 4.79289 4.82814 4.88377 4.92668 5.02137 5.09521 5.26094 5.37412 5.49053 5.60256 5.63312 5.69565 5.81839 5.83538 5.85707 6.01684 6.11139 6.12745 6.21127 6.33028 6.37785 6.46118 6.54950 6.62103 6.64784 6.67155 6.93809 7.10859 7.76040 7.94975 8.31626 8.92908 9.70803 10.08455 11.19767 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.002293 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.762604 B =12210.085150 C =12527.850789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.294 6.294 3 C 0.306 3.694 4 C -0.129 4.129 5 C -0.179 4.179 6 C 0.590 3.410 7 O -0.516 6.516 8 N -0.710 5.710 9 C 0.129 3.871 10 C -0.066 4.066 11 C -0.147 4.147 12 C -0.125 4.125 13 C 0.148 3.852 14 N -0.604 5.604 15 C -0.259 4.259 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.121 4.121 25 S 0.290 5.710 26 N -0.509 5.509 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.179 0.821 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.262 0.738 42 H 0.028 0.972 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -19.283 7.567 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.200 6.200 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.311 4.311 6 C 0.373 3.627 7 O -0.392 6.392 8 N -0.362 5.362 9 C 0.006 3.994 10 C -0.066 4.066 11 C -0.204 4.204 12 C -0.164 4.164 13 C 0.022 3.978 14 N -0.328 5.328 15 C -0.387 4.387 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.001 3.999 24 C -0.161 4.161 25 S 0.439 5.561 26 N -0.351 5.351 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.196 0.804 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.024 -18.391 7.505 26.822 hybrid contribution 0.590 -0.829 0.986 1.417 sum -17.434 -19.220 8.491 27.303 Atomic orbital electron populations 1.23014 0.76490 1.03793 1.02680 1.86322 1.23166 1.22381 1.88119 1.19919 0.89805 0.85346 0.95714 1.20777 0.92359 0.98638 1.04854 1.26056 0.99448 0.97798 1.07825 1.16644 0.85224 0.83146 0.77651 1.90864 1.46651 1.52569 1.49140 1.45961 1.10434 1.05857 1.73950 1.21680 0.79996 0.94936 1.02740 1.20727 0.97788 0.91669 0.96462 1.21996 0.99030 1.02797 0.96600 1.22097 0.98310 0.99133 0.96908 1.20944 0.86415 0.90992 0.99438 1.44325 1.07137 1.50437 1.30908 1.18911 1.15873 1.11917 0.92025 0.89766 1.25289 0.97652 0.97623 0.97094 1.69837 1.17783 1.34564 1.32932 0.86949 0.77917 0.76316 0.87457 1.21647 1.23242 1.19618 1.21349 0.96677 0.91057 0.90833 1.22013 0.93452 0.98965 1.01633 1.85056 0.89925 1.12006 1.69097 1.76460 1.26613 1.01041 1.30939 0.91988 0.87845 0.92017 0.80386 0.76273 0.90962 0.90688 0.92790 0.90859 0.93473 0.91460 0.93132 0.95701 0.91943 0.92786 0.95447 0.90963 0.92450 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.43 101.05 1.05 1.27 16 2 O -0.29 -2.63 10.51 -19.62 -0.21 -2.84 16 3 C 0.31 3.02 7.36 -18.42 -0.14 2.89 16 4 C -0.13 -1.26 10.09 -39.90 -0.40 -1.66 16 5 C -0.18 -1.81 6.74 -36.05 -0.24 -2.06 16 6 C 0.59 7.01 7.80 -12.66 -0.10 6.91 16 7 O -0.52 -7.76 16.95 5.25 0.09 -7.67 16 8 N -0.71 -7.57 4.94 -61.48 -0.30 -7.88 16 9 C 0.13 1.55 4.56 -4.04 -0.02 1.53 16 10 C -0.07 -0.87 0.53 -154.46 -0.08 -0.96 16 11 C -0.15 -1.79 7.54 37.15 0.28 -1.51 16 12 C -0.13 -1.78 4.75 -26.61 -0.13 -1.91 16 13 C 0.15 2.64 6.05 -3.71 -0.02 2.62 16 14 N -0.60 -13.48 2.77 -172.32 -0.48 -13.95 16 15 C -0.26 -7.00 10.04 -15.06 -0.15 -7.15 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.46 13.97 55.49 0.78 -26.68 16 19 Si 0.88 21.86 24.35 -169.99 -4.14 17.73 16 20 H -0.29 -6.90 6.62 56.52 0.37 -6.52 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.27 -6.53 6.63 56.52 0.37 -6.15 16 23 C 0.13 2.57 3.73 -3.71 -0.01 2.56 16 24 C -0.12 -1.94 4.91 -26.61 -0.13 -2.07 16 25 S 0.29 2.57 23.27 -107.50 -2.50 0.07 16 26 N -0.51 -5.18 11.03 29.19 0.32 -4.86 16 27 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.37 8.13 -51.92 -0.42 -0.06 16 30 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.40 3.63 5.52 -40.82 -0.23 3.41 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.05 4.98 -51.93 -0.26 0.79 16 36 H 0.05 0.47 6.86 -51.93 -0.36 0.11 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.58 6.82 -51.93 -0.35 0.22 16 39 H 0.03 0.43 6.69 -51.93 -0.35 0.08 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.03 0.55 5.62 -51.93 -0.29 0.26 16 43 H 0.07 1.66 4.50 -51.93 -0.23 1.42 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -32.00 364.50 -7.45 -39.45 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.32 Total: 0.16 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.18 Total: 0.99 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.32 Total: -53.37 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.12 Total: -10.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.73 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -2.50 Total: 0.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.00 -7.45 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754715807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.181 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds