Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35962 * 117.00052 * 2 1 4 4 C 1.37572 * 120.82366 * 180.25291 * 3 2 1 5 5 C 1.38036 * 114.24719 * 180.19126 * 4 3 2 6 6 C 1.47121 * 127.76124 * 179.86974 * 5 4 3 7 7 O 1.21629 * 119.99361 * 359.70100 * 6 5 4 8 8 N 1.34768 * 120.00189 * 179.42107 * 6 5 4 9 9 C 1.46498 * 120.00179 * 180.27232 * 8 6 5 10 10 C 1.53002 * 109.47431 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.46056 * 60.02844 * 10 9 8 12 12 C 1.53045 * 109.45649 * 300.06873 * 10 9 8 13 13 C 1.53195 * 109.30762 * 178.61504 * 12 10 9 14 14 N 1.46926 * 108.77512 * 54.63753 * 13 12 10 15 15 C 1.36939 * 120.62864 * 126.41237 * 14 13 12 16 16 H 1.08000 * 120.00012 * 332.60607 * 15 14 13 17 17 C 1.38810 * 119.99930 * 152.60304 * 15 14 13 18 18 N 1.31622 * 120.00182 * 159.33999 * 17 15 14 19 19 Si 1.86807 * 119.99954 * 339.34465 * 17 15 14 20 20 H 1.48505 * 109.46715 * 92.94076 * 19 17 15 21 21 H 1.48503 * 109.46874 * 212.93653 * 19 17 15 22 22 H 1.48494 * 109.47140 * 332.94249 * 19 17 15 23 23 C 1.46923 * 118.73839 * 306.38543 * 14 13 12 24 24 C 1.53045 * 109.46072 * 180.02562 * 10 9 8 25 25 S 1.77230 * 104.48098 * 359.60118 * 5 4 3 26 26 N 1.30354 * 120.82587 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.46952 * 59.99415 * 1 2 3 28 28 H 1.08992 * 109.47146 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47014 * 299.99790 * 1 2 3 30 30 H 1.07995 * 122.87872 * 0.02562 * 4 3 2 31 31 H 0.97005 * 120.00161 * 0.28061 * 8 6 5 32 32 H 1.09001 * 109.47289 * 300.00945 * 9 8 6 33 33 H 1.09005 * 109.47018 * 60.00488 * 9 8 6 34 34 H 1.09006 * 109.47259 * 60.00013 * 11 10 9 35 35 H 1.09000 * 109.47393 * 179.97438 * 11 10 9 36 36 H 1.09005 * 109.47480 * 300.00092 * 11 10 9 37 37 H 1.09004 * 109.49683 * 298.56448 * 12 10 9 38 38 H 1.09001 * 109.49687 * 58.66658 * 12 10 9 39 39 H 1.09001 * 109.58670 * 294.84917 * 13 12 10 40 40 H 1.08996 * 109.58250 * 174.42412 * 13 12 10 41 41 H 0.96994 * 120.00148 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58974 * 293.82698 * 23 14 13 43 43 H 1.08997 * 109.70315 * 173.46935 * 23 14 13 44 44 H 1.09001 * 109.49617 * 301.33908 * 24 10 9 45 45 H 1.09003 * 109.49432 * 61.42910 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4190 1.3032 -0.0052 5 6 3.9007 2.5967 -0.0003 6 6 5.3050 3.0351 -0.0012 7 8 6.1993 2.2108 -0.0012 8 7 5.6005 4.3500 -0.0076 9 6 6.9989 4.7865 -0.0145 10 6 7.0560 6.3155 -0.0202 11 6 6.3596 6.8562 1.2301 12 6 6.3478 6.8473 -1.2684 13 6 6.3767 8.3789 -1.2532 14 7 7.7699 8.8242 -1.1141 15 6 8.3118 9.7098 -2.0070 16 1 7.9344 9.7565 -3.0178 17 6 9.3461 10.5475 -1.6129 18 7 10.1330 11.0917 -2.5168 19 14 9.6213 10.9024 0.2004 20 1 10.6087 9.9383 0.7491 21 1 10.1378 12.2854 0.3612 22 1 8.3365 10.7654 0.9321 23 6 8.5705 8.3018 0.0017 24 6 8.5171 6.7711 -0.0281 25 16 2.4472 3.6109 -0.0008 26 7 1.3522 2.3148 -0.0005 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 4.0644 0.4373 -0.0099 31 1 4.8873 5.0074 -0.0075 32 1 7.5022 4.4078 0.8751 33 1 7.4956 4.4007 -0.9048 34 1 6.8634 6.4771 2.1193 35 1 6.4006 7.9455 1.2264 36 1 5.3191 6.5314 1.2357 37 1 6.8584 6.4826 -2.1597 38 1 5.3136 6.5030 -1.2743 39 1 5.7896 8.7472 -0.4119 40 1 5.9623 8.7614 -2.1859 41 1 10.8560 11.6768 -2.2414 42 1 8.1622 8.6637 0.9453 43 1 9.6037 8.6333 -0.1006 44 1 9.0272 6.3724 0.8488 45 1 9.0068 6.4070 -0.9313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754715807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -24.334191 kcal Electronic energy + Delta-G solvation = -27164.223212 eV Core-core repulsion = 23309.011088 eV Total energy + Delta-G solvation = -3855.212124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47150 -41.04646 -39.99121 -37.56653 -36.76343 -34.77199 -33.26686 -32.43279 -31.89996 -29.34826 -28.76775 -28.09046 -26.21941 -25.20673 -24.25755 -22.89955 -22.41521 -21.18998 -19.89327 -19.67169 -18.84644 -18.30435 -17.62532 -17.33524 -17.15533 -16.96194 -16.55055 -15.92772 -15.81288 -15.51520 -15.43851 -15.23815 -14.95319 -14.62396 -14.50167 -14.39466 -14.06661 -13.91648 -13.57550 -13.17399 -13.00814 -12.84658 -12.57367 -12.39305 -12.23796 -12.16688 -12.14642 -12.08845 -12.00599 -11.68558 -11.52261 -11.43393 -11.15316 -11.08901 -10.94582 -10.63655 -10.23312 -9.49854 -8.85277 -8.13290 -5.43688 -1.05427 0.00219 0.38322 1.04538 1.32305 1.43300 1.52310 1.65812 1.85954 2.26072 2.44579 3.09593 3.38833 3.41399 3.68896 3.77548 3.80792 3.86259 4.07848 4.29207 4.31618 4.35056 4.41000 4.51889 4.54085 4.58945 4.71833 4.72815 4.76606 4.77727 4.85445 4.96446 4.97178 5.05480 5.07388 5.15714 5.24009 5.30067 5.35686 5.40917 5.64574 5.91257 5.92108 6.16423 6.24441 6.88391 6.97417 7.68293 8.08070 9.06802 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029947 B = 0.002293 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.762604 B =12210.085150 C =12527.850789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.301 3.699 4 C -0.129 4.129 5 C -0.190 4.190 6 C 0.596 3.404 7 O -0.551 6.551 8 N -0.700 5.700 9 C 0.139 3.861 10 C -0.057 4.057 11 C -0.146 4.146 12 C -0.117 4.117 13 C 0.142 3.858 14 N -0.619 5.619 15 C -0.243 4.243 16 H 0.049 0.951 17 C -0.041 4.041 18 N -0.960 5.960 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.316 1.316 22 H -0.256 1.256 23 C 0.121 3.879 24 C -0.116 4.116 25 S 0.328 5.672 26 N -0.524 5.524 27 H 0.060 0.940 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.183 0.817 31 H 0.411 0.589 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.596 -21.001 9.871 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.210 6.210 3 C 0.088 3.912 4 C -0.168 4.168 5 C -0.322 4.322 6 C 0.380 3.620 7 O -0.430 6.430 8 N -0.352 5.352 9 C 0.016 3.984 10 C -0.058 4.058 11 C -0.203 4.203 12 C -0.156 4.156 13 C 0.018 3.982 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.066 0.934 17 C -0.235 4.235 18 N -0.607 5.607 19 Si 0.778 3.222 20 H -0.203 1.203 21 H -0.245 1.245 22 H -0.180 1.180 23 C -0.003 4.003 24 C -0.156 4.156 25 S 0.477 5.523 26 N -0.367 5.367 27 H 0.078 0.922 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.200 0.800 31 H 0.249 0.751 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.230 -20.133 9.838 30.189 hybrid contribution 1.129 -0.349 0.184 1.195 sum -19.102 -20.482 10.022 29.746 Atomic orbital electron populations 1.23246 0.75015 1.05598 1.02550 1.86320 1.24665 1.22037 1.87935 1.19958 0.89871 0.85619 0.95727 1.20887 0.92536 0.98878 1.04454 1.25848 0.99101 0.98447 1.08782 1.16748 0.85498 0.82975 0.76790 1.90852 1.47855 1.53458 1.50843 1.45809 1.10193 1.05808 1.73396 1.21460 0.80701 0.93551 1.02726 1.20600 0.95867 0.92570 0.96720 1.21984 1.00720 1.01487 0.96096 1.21992 1.00518 0.96185 0.96883 1.21152 0.84063 0.93453 0.99578 1.44460 1.09280 1.49971 1.30650 1.18858 1.14905 1.11987 0.91568 0.93359 1.25941 0.98057 0.98268 1.01232 1.69981 1.19140 1.36483 1.35098 0.85882 0.78560 0.75397 0.82397 1.20272 1.24519 1.18021 1.21396 0.94703 0.93919 0.90315 1.21908 0.95832 0.95685 1.02138 1.84858 0.88433 1.10769 1.68192 1.76395 1.27454 1.01617 1.31244 0.92155 0.85172 0.92041 0.79966 0.75103 0.90231 0.91678 0.91485 0.92706 0.90795 0.93170 0.89514 0.93721 0.93195 0.93156 0.94162 0.93910 0.89893 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.43 113.37 1.18 1.49 16 2 O -0.30 -4.94 10.51 -93.12 -0.98 -5.92 16 3 C 0.30 5.43 7.36 84.75 0.62 6.05 16 4 C -0.13 -2.31 10.09 22.06 0.22 -2.09 16 5 C -0.19 -3.41 6.74 24.56 0.17 -3.24 16 6 C 0.60 12.72 7.80 86.58 0.68 13.39 16 7 O -0.55 -15.69 16.95 -4.12 -0.07 -15.76 16 8 N -0.70 -12.59 4.94 -466.68 -2.31 -14.90 16 9 C 0.14 2.90 4.56 86.38 0.39 3.29 16 10 C -0.06 -1.33 0.53 -52.15 -0.03 -1.36 16 11 C -0.15 -2.92 7.54 71.98 0.54 -2.37 16 12 C -0.12 -3.03 4.75 30.67 0.15 -2.89 16 13 C 0.14 4.86 6.05 86.36 0.52 5.38 16 14 N -0.62 -27.34 2.77 -699.11 -1.94 -29.27 16 15 C -0.24 -13.52 10.04 84.03 0.84 -12.67 16 16 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 17 C -0.04 -2.36 5.23 84.86 0.44 -1.92 16 18 N -0.96 -60.41 13.97 21.65 0.30 -60.11 16 19 Si 0.95 45.83 24.35 68.60 1.67 47.50 16 20 H -0.28 -12.61 6.62 99.48 0.66 -11.95 16 21 H -0.32 -15.73 7.11 99.48 0.71 -15.03 16 22 H -0.26 -11.56 6.63 99.48 0.66 -10.90 16 23 C 0.12 4.75 3.73 86.36 0.32 5.07 16 24 C -0.12 -3.47 4.91 30.67 0.15 -3.32 16 25 S 0.33 4.88 23.27 -56.49 -1.31 3.57 16 26 N -0.52 -9.58 11.03 -175.23 -1.93 -11.51 16 27 H 0.06 0.63 8.12 -2.39 -0.02 0.61 16 28 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.62 8.13 -2.38 -0.02 0.60 16 30 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.41 5.69 5.52 -92.70 -0.51 5.18 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.05 1.34 4.98 -2.39 -0.01 1.33 16 36 H 0.07 1.09 6.86 -2.38 -0.02 1.07 16 37 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 38 H 0.09 1.64 6.82 -2.39 -0.02 1.62 16 39 H 0.04 1.39 6.69 -2.39 -0.02 1.37 16 40 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.04 1.49 5.62 -2.39 -0.01 1.48 16 43 H 0.04 1.93 4.50 -2.39 -0.01 1.92 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.72 364.50 0.06 -71.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.42 Total: 9.94 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 6.21 Total: 4.81 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -5.87 Total: -115.79 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.05 Total: -21.68 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.50 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -1.31 Total: 3.57 kcal Total: -71.72 0.06 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754715807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.326 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds