Wall clock time and date at job start Sat Apr 11 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48496 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 300.00013 * 3 2 1 6 6 H 1.48506 * 109.46837 * 59.99820 * 3 2 1 7 7 C 1.38801 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00121 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47164 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99914 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64760 * 0.02562 * 13 11 10 15 15 C 1.54325 * 107.26905 * 178.88909 * 14 13 11 16 16 C 1.55156 * 102.94386 * 337.81039 * 15 14 13 17 17 H 1.08999 * 111.00396 * 277.38541 * 16 15 14 18 18 C 1.53006 * 111.00251 * 153.57231 * 16 15 14 19 19 C 1.52999 * 109.46626 * 174.99548 * 18 16 15 20 20 N 1.46906 * 109.46904 * 179.97438 * 19 18 16 21 21 C 1.46898 * 110.99895 * 179.97438 * 20 19 18 22 22 C 1.50704 * 109.47048 * 180.02562 * 21 20 19 23 23 C 1.41382 * 126.79803 * 94.70993 * 22 21 20 24 24 C 1.35454 * 103.98465 * 179.88847 * 23 22 21 25 25 O 1.34049 * 106.44325 * 0.37802 * 24 23 22 26 26 N 1.20914 * 111.56728 * 359.73864 * 25 24 23 27 27 C 1.47427 * 125.64870 * 179.97438 * 13 11 10 28 28 H 0.96996 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46959 * 59.99696 * 10 9 7 30 30 H 1.08999 * 109.46562 * 299.99820 * 10 9 7 31 31 H 1.09005 * 109.88477 * 59.47877 * 14 13 11 32 32 H 1.08994 * 109.88081 * 298.31070 * 14 13 11 33 33 H 1.08997 * 110.72574 * 219.44207 * 15 14 13 34 34 H 1.09006 * 110.71418 * 96.17358 * 15 14 13 35 35 H 1.08993 * 109.46955 * 295.00020 * 18 16 15 36 36 H 1.09000 * 109.47050 * 54.99849 * 18 16 15 37 37 H 1.08993 * 109.47839 * 299.99931 * 19 18 16 38 38 H 1.09000 * 109.47160 * 60.00369 * 19 18 16 39 39 H 1.00901 * 110.99687 * 56.05002 * 20 19 18 40 40 H 1.08995 * 109.47632 * 300.00548 * 21 20 19 41 41 H 1.09005 * 109.46845 * 60.01122 * 21 20 19 42 42 H 1.07999 * 128.00736 * 0.03287 * 23 22 21 43 43 H 1.07991 * 126.77984 * 180.09624 * 24 23 22 44 44 H 1.09000 * 110.36013 * 85.33624 * 27 13 11 45 45 H 1.08997 * 110.36806 * 323.01581 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3028 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 4.3112 -6.2450 -0.0003 15 6 4.8665 -7.6846 0.0272 16 6 3.6844 -8.5021 0.6118 17 1 3.6697 -8.4441 1.7002 18 6 3.7398 -9.9577 0.1438 19 6 2.6356 -10.7585 0.8368 20 7 2.6883 -12.1560 0.3871 21 6 1.6403 -12.9570 1.0337 22 6 1.7261 -14.3815 0.5493 23 6 2.4097 -15.4491 1.1751 24 6 2.1839 -16.5059 0.3585 25 8 1.4336 -16.0494 -0.6542 26 7 1.1903 -14.8714 -0.5312 27 6 2.4656 -7.7679 -0.0009 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.6462 -5.7016 0.8832 32 1 4.6488 -5.7346 -0.9023 33 1 5.7389 -7.7491 0.6775 34 1 5.1091 -8.0237 -0.9800 35 1 3.5951 -9.9980 -0.9357 36 1 4.7108 -10.3839 0.3964 37 1 2.7803 -10.7182 1.9164 38 1 1.6646 -10.3324 0.5843 39 1 3.6006 -12.5545 0.5513 40 1 1.7789 -12.9322 2.1145 41 1 0.6623 -12.5460 0.7831 42 1 2.9782 -15.4276 2.0931 43 1 2.5418 -17.5158 0.4938 44 1 2.2875 -8.1129 -1.0194 45 1 1.5797 -7.9251 0.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754903931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:35 Heat of formation + Delta-G solvation = 24.112487 kcal Electronic energy + Delta-G solvation = -25306.129803 eV Core-core repulsion = 21453.018484 eV Total energy + Delta-G solvation = -3853.111319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.36343 -39.88232 -37.89210 -36.92591 -34.62470 -32.89860 -32.41825 -32.04927 -30.23136 -29.56007 -27.84588 -25.77021 -25.37893 -23.69748 -23.47651 -22.11052 -21.54345 -20.47082 -19.28802 -18.24316 -17.96004 -17.69614 -16.84709 -16.53396 -16.16103 -15.47938 -15.17739 -14.94718 -14.79670 -14.56759 -14.42059 -14.01858 -13.86584 -13.70428 -13.44321 -13.08536 -12.72849 -12.61434 -12.57260 -12.33574 -12.15357 -11.82913 -11.75065 -11.54792 -11.22115 -11.06540 -11.00642 -10.88515 -10.83962 -10.73538 -10.61189 -10.09886 -9.79358 -9.37974 -9.06418 -8.96018 -8.46287 -8.21369 -6.48951 -6.20719 -3.91194 1.07456 1.72966 2.82895 2.94912 3.09518 3.22104 3.27130 3.31983 3.56139 3.65287 3.80395 4.13232 4.19496 4.22610 4.42633 4.57163 4.65584 4.74968 4.77072 4.88695 4.90310 5.08402 5.11772 5.14462 5.16234 5.17089 5.19975 5.27271 5.45918 5.52349 5.52627 5.55222 5.66664 5.69219 5.72354 5.78340 5.86702 5.98131 6.08529 6.16088 6.43185 6.46927 6.83789 7.60765 7.71264 7.86031 8.36467 8.59095 9.24588 10.86824 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033077 B = 0.001507 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.313566 B =18575.051379 C =19182.007197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.125 4.125 16 C -0.101 4.101 17 H 0.085 0.915 18 C -0.103 4.103 19 C 0.056 3.944 20 N -0.684 5.684 21 C 0.136 3.864 22 C 0.016 3.984 23 C -0.233 4.233 24 C -0.060 4.060 25 O 0.102 5.898 26 N -0.344 5.344 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.342 0.658 40 H 0.055 0.945 41 H 0.092 0.908 42 H 0.170 0.830 43 H 0.216 0.784 44 H 0.066 0.934 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.610 -32.142 4.014 34.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.391 6.391 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.163 4.163 16 C -0.121 4.121 17 H 0.103 0.897 18 C -0.142 4.142 19 C -0.072 4.072 20 N -0.316 5.316 21 C 0.007 3.993 22 C -0.144 4.144 23 C -0.255 4.255 24 C -0.142 4.142 25 O 0.034 5.966 26 N -0.046 5.046 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.159 0.841 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.188 0.812 43 H 0.233 0.767 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.459 -31.587 2.462 33.065 hybrid contribution 2.975 0.972 1.716 3.570 sum 12.434 -30.615 4.178 33.307 Atomic orbital electron populations 1.70033 1.05951 1.27330 1.46961 1.24995 0.95023 0.99018 0.94550 0.86114 0.79578 0.81883 0.77899 1.19620 1.20554 1.20572 1.22902 0.94927 0.91610 1.58816 0.90895 1.85404 1.05043 0.96367 1.96702 1.23504 1.06390 0.95034 1.04754 1.20023 0.85691 0.85500 0.75180 1.90706 1.14953 1.85163 1.48265 1.48509 1.06511 1.05780 1.75680 1.21989 0.80601 0.97527 1.02092 1.22682 0.97729 0.93825 1.02061 1.22367 0.95083 0.93944 1.00669 0.89685 1.21476 0.98220 0.92895 1.01584 1.22066 1.00720 0.87368 0.97071 1.60406 1.07315 1.02308 1.61522 1.20170 0.97792 0.85463 0.95924 1.23513 0.99382 0.98537 0.92976 1.22775 1.06442 0.92136 1.04160 1.26047 0.97372 1.01709 0.89052 1.84891 1.52377 1.18654 1.40712 1.73911 1.19750 0.91978 1.18992 1.22237 0.97506 0.80515 1.00826 0.92242 0.89352 0.89335 0.91351 0.91302 0.90065 0.90361 0.90421 0.91499 0.94732 0.90213 0.84062 0.92660 0.88937 0.81233 0.76726 0.91536 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.09 5.35 36.01 0.19 -2.89 16 11 C 0.55 10.95 7.87 -10.99 -0.09 10.87 16 12 O -0.52 -12.38 16.12 5.56 0.09 -12.29 16 13 N -0.63 -9.34 3.33 -170.52 -0.57 -9.90 16 14 C 0.10 1.10 6.49 -3.06 -0.02 1.08 16 15 C -0.13 -0.95 6.42 -24.90 -0.16 -1.11 16 16 C -0.10 -0.82 3.01 -88.47 -0.27 -1.09 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.10 -0.68 4.99 -26.73 -0.13 -0.82 16 19 C 0.06 0.39 5.59 -3.82 -0.02 0.37 16 20 N -0.68 -4.96 6.49 -115.06 -0.75 -5.71 16 21 C 0.14 0.97 6.27 -4.98 -0.03 0.94 16 22 C 0.02 0.12 6.84 -82.10 -0.56 -0.44 16 23 C -0.23 -1.20 11.12 -39.38 -0.44 -1.64 16 24 C -0.06 -0.26 12.30 29.74 0.37 0.10 16 25 O 0.10 0.82 11.20 17.16 0.19 1.01 16 26 N -0.34 -3.50 12.07 33.42 0.40 -3.10 16 27 C 0.11 1.36 5.86 -2.53 -0.01 1.34 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.08 0.60 7.96 -51.93 -0.41 0.18 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.66 7.75 -51.93 -0.40 0.26 16 39 H 0.34 2.03 8.72 -39.29 -0.34 1.69 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.22 -0.04 8.06 -52.49 -0.42 -0.46 16 44 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 45 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -37.11 393.02 -9.21 -46.31 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.02 Total: -2.80 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.98 Total: -6.38 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.18 Total: -44.38 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.28 Total: -11.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.11 -9.21 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754903931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.426 kcal (2) G-P(sol) polarization free energy of solvation -37.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds