Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48496 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47288 * 300.00013 * 3 2 1 6 6 H 1.48506 * 109.46837 * 59.99820 * 3 2 1 7 7 C 1.38801 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99769 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00121 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47164 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99914 * 179.97438 * 11 10 9 14 14 C 1.47023 * 125.64760 * 0.02562 * 13 11 10 15 15 C 1.54325 * 107.26905 * 178.88909 * 14 13 11 16 16 C 1.55156 * 102.94386 * 337.81039 * 15 14 13 17 17 H 1.08999 * 111.00396 * 277.38541 * 16 15 14 18 18 C 1.53006 * 111.00251 * 153.57231 * 16 15 14 19 19 C 1.52999 * 109.46626 * 174.99548 * 18 16 15 20 20 N 1.46906 * 109.46904 * 179.97438 * 19 18 16 21 21 C 1.46898 * 110.99895 * 179.97438 * 20 19 18 22 22 C 1.50704 * 109.47048 * 180.02562 * 21 20 19 23 23 C 1.41382 * 126.79803 * 94.70993 * 22 21 20 24 24 C 1.35454 * 103.98465 * 179.88847 * 23 22 21 25 25 O 1.34049 * 106.44325 * 0.37802 * 24 23 22 26 26 N 1.20914 * 111.56728 * 359.73864 * 25 24 23 27 27 C 1.47427 * 125.64870 * 179.97438 * 13 11 10 28 28 H 0.96996 * 119.99940 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46959 * 59.99696 * 10 9 7 30 30 H 1.08999 * 109.46562 * 299.99820 * 10 9 7 31 31 H 1.09005 * 109.88477 * 59.47877 * 14 13 11 32 32 H 1.08994 * 109.88081 * 298.31070 * 14 13 11 33 33 H 1.08997 * 110.72574 * 219.44207 * 15 14 13 34 34 H 1.09006 * 110.71418 * 96.17358 * 15 14 13 35 35 H 1.08993 * 109.46955 * 295.00020 * 18 16 15 36 36 H 1.09000 * 109.47050 * 54.99849 * 18 16 15 37 37 H 1.08993 * 109.47839 * 299.99931 * 19 18 16 38 38 H 1.09000 * 109.47160 * 60.00369 * 19 18 16 39 39 H 1.00901 * 110.99687 * 56.05002 * 20 19 18 40 40 H 1.08995 * 109.47632 * 300.00548 * 21 20 19 41 41 H 1.09005 * 109.46845 * 60.01122 * 21 20 19 42 42 H 1.07999 * 128.00736 * 0.03287 * 23 22 21 43 43 H 1.07991 * 126.77984 * 180.09624 * 24 23 22 44 44 H 1.09000 * 110.36013 * 85.33624 * 27 13 11 45 45 H 1.08997 * 110.36806 * 323.01581 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3028 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0007 14 6 4.3112 -6.2450 -0.0003 15 6 4.8665 -7.6846 0.0272 16 6 3.6844 -8.5021 0.6118 17 1 3.6697 -8.4441 1.7002 18 6 3.7398 -9.9577 0.1438 19 6 2.6356 -10.7585 0.8368 20 7 2.6883 -12.1560 0.3871 21 6 1.6403 -12.9570 1.0337 22 6 1.7261 -14.3815 0.5493 23 6 2.4097 -15.4491 1.1751 24 6 2.1839 -16.5059 0.3585 25 8 1.4336 -16.0494 -0.6542 26 7 1.1903 -14.8714 -0.5312 27 6 2.4656 -7.7679 -0.0009 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.6462 -5.7016 0.8832 32 1 4.6488 -5.7346 -0.9023 33 1 5.7389 -7.7491 0.6775 34 1 5.1091 -8.0237 -0.9800 35 1 3.5951 -9.9980 -0.9357 36 1 4.7108 -10.3839 0.3964 37 1 2.7803 -10.7182 1.9164 38 1 1.6646 -10.3324 0.5843 39 1 3.6006 -12.5545 0.5513 40 1 1.7789 -12.9322 2.1145 41 1 0.6623 -12.5460 0.7831 42 1 2.9782 -15.4276 2.0931 43 1 2.5418 -17.5158 0.4938 44 1 2.2875 -8.1129 -1.0194 45 1 1.5797 -7.9251 0.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754903931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -2.520569 kcal Electronic energy + Delta-G solvation = -25307.284699 eV Core-core repulsion = 21453.018484 eV Total energy + Delta-G solvation = -3854.266215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.87875 -41.09400 -38.96043 -37.71099 -35.27374 -34.60414 -33.74401 -32.55402 -31.25530 -30.79865 -28.74753 -27.69568 -26.41327 -24.58326 -23.98186 -22.80694 -22.03653 -21.18698 -20.71053 -19.57656 -18.70157 -18.51209 -18.06793 -17.62108 -17.01518 -16.90274 -16.59584 -16.03562 -15.76093 -15.64084 -15.53149 -15.03850 -14.73995 -14.55672 -14.36499 -14.17184 -13.87067 -13.80297 -13.50475 -13.21883 -13.16259 -13.14394 -12.92152 -12.82153 -12.61473 -12.37479 -12.11450 -11.89922 -11.71378 -11.57027 -11.48114 -11.17276 -11.12059 -10.99496 -10.54728 -10.30474 -9.71134 -9.48111 -8.70769 -8.36313 -6.15651 0.66359 1.22631 1.27639 1.40946 1.44087 1.52978 1.56519 2.09309 2.25659 2.50823 2.97935 3.06361 3.22105 3.31627 3.47501 3.65146 3.70981 3.87269 3.94281 4.17375 4.20781 4.24682 4.30318 4.32568 4.40385 4.41125 4.44867 4.47557 4.58125 4.66378 4.72763 4.81507 4.84782 4.91258 4.93427 5.04848 5.12124 5.17663 5.23517 5.34772 5.40101 5.47823 5.89142 6.18350 6.37829 6.38940 7.04644 7.08631 7.40758 8.73428 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033077 B = 0.001507 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.313566 B =18575.051379 C =19182.007197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.118 4.118 11 C 0.543 3.457 12 O -0.571 6.571 13 N -0.619 5.619 14 C 0.087 3.913 15 C -0.112 4.112 16 C -0.085 4.085 17 H 0.092 0.908 18 C -0.093 4.093 19 C 0.059 3.941 20 N -0.693 5.693 21 C 0.137 3.863 22 C 0.001 3.999 23 C -0.237 4.237 24 C -0.048 4.048 25 O 0.085 5.915 26 N -0.394 5.394 27 C 0.104 3.896 28 H 0.272 0.728 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.351 0.649 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.198 0.802 43 H 0.260 0.740 44 H 0.064 0.936 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.716 -33.437 4.979 37.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.269 4.269 11 C 0.331 3.669 12 O -0.450 6.450 13 N -0.353 5.353 14 C -0.035 4.035 15 C -0.150 4.150 16 C -0.105 4.105 17 H 0.111 0.889 18 C -0.131 4.131 19 C -0.070 4.070 20 N -0.326 5.326 21 C 0.008 3.992 22 C -0.158 4.158 23 C -0.259 4.259 24 C -0.129 4.129 25 O 0.019 5.981 26 N -0.099 5.099 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.170 0.830 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.215 0.785 43 H 0.276 0.724 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.630 -32.940 3.425 35.813 hybrid contribution 1.749 1.190 1.427 2.552 sum 15.378 -31.750 4.852 35.610 Atomic orbital electron populations 1.70198 1.08048 1.28611 1.47977 1.26161 0.95978 1.03380 0.93615 0.84870 0.78613 0.76108 0.78124 1.17911 1.19890 1.19829 1.23222 0.95333 0.91796 1.58981 0.89869 1.85611 1.10621 0.99391 1.97039 1.23293 1.03353 0.93960 1.06331 1.19825 0.85484 0.86152 0.75461 1.90681 1.17197 1.85844 1.51257 1.48504 1.08092 1.05768 1.72958 1.22402 0.77759 1.00411 1.02908 1.22709 0.97949 0.90853 1.03481 1.22303 0.92994 0.94386 1.00836 0.88922 1.21389 0.99241 0.91680 1.00786 1.22007 0.99848 0.87305 0.97841 1.60332 1.07853 1.02408 1.62030 1.20147 0.96844 0.85242 0.96998 1.23844 0.99579 0.99384 0.92964 1.23130 1.06449 0.91155 1.05150 1.26930 0.95311 1.03303 0.87308 1.84828 1.53196 1.18066 1.42042 1.73911 1.21957 0.93182 1.20824 1.22479 0.99122 0.79351 1.00894 0.91948 0.87486 0.87667 0.90355 0.90666 0.87012 0.89245 0.91420 0.88906 0.93497 0.92453 0.82961 0.90648 0.91036 0.78505 0.72383 0.91735 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.83 13.22 21.65 0.29 -56.54 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.98 29.55 68.60 2.03 46.01 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.74 9.50 67.95 0.65 -31.10 16 8 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.15 -8.85 20.57 -56.49 -1.16 -10.02 16 10 C -0.12 -5.00 5.35 71.24 0.38 -4.62 16 11 C 0.54 22.12 7.87 87.66 0.69 22.81 16 12 O -0.57 -28.79 16.12 -3.02 -0.05 -28.84 16 13 N -0.62 -18.00 3.33 -811.79 -2.70 -20.70 16 14 C 0.09 1.66 6.49 86.73 0.56 2.22 16 15 C -0.11 -1.27 6.42 31.78 0.20 -1.06 16 16 C -0.09 -1.17 3.01 -9.40 -0.03 -1.20 16 17 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 18 C -0.09 -0.99 4.99 30.60 0.15 -0.84 16 19 C 0.06 0.75 5.59 86.30 0.48 1.23 16 20 N -0.69 -9.42 6.49 -517.93 -3.36 -12.78 16 21 C 0.14 1.93 6.27 85.56 0.54 2.47 16 22 C 0.00 0.02 6.84 43.58 0.30 0.31 16 23 C -0.24 -1.95 11.12 22.40 0.25 -1.70 16 24 C -0.05 -0.31 12.30 67.18 0.83 0.51 16 25 O 0.08 1.34 11.20 71.56 0.80 2.14 16 26 N -0.39 -8.23 12.07 -49.56 -0.60 -8.83 16 27 C 0.10 2.49 5.86 86.85 0.51 3.00 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 30 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.88 8.04 -2.38 -0.02 0.86 16 35 H 0.07 0.91 7.96 -2.39 -0.02 0.89 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.99 7.75 -2.39 -0.02 0.97 16 39 H 0.35 3.49 8.72 -89.69 -0.78 2.70 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.20 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.26 -1.04 8.06 -2.91 -0.02 -1.07 16 44 H 0.06 1.58 7.91 -2.39 -0.02 1.56 16 45 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -86.44 393.02 1.43 -85.01 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.21 Total: 11.28 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.97 Total: -6.73 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -6.37 Total: -98.85 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: 0.75 Total: -26.69 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.02 kcal Total: -86.44 1.43 -85.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754903931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.488 kcal (2) G-P(sol) polarization free energy of solvation -86.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds