Wall clock time and date at job start Sat Apr 11 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39838 * 126.45882 * 2 1 4 4 C 1.35456 * 107.86319 * 180.29879 * 3 2 1 5 5 N 1.35535 * 108.87179 * 359.74246 * 4 3 2 6 6 H 0.97002 * 125.67900 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64464 * 359.97438 * 5 4 3 8 8 C 1.46674 * 126.23037 * 179.97438 * 7 5 4 9 9 O 1.21698 * 119.99576 * 187.22570 * 8 7 5 10 10 N 1.34771 * 120.00249 * 7.23605 * 8 7 5 11 11 C 1.46502 * 120.00173 * 6.35270 * 10 8 7 12 12 C 1.46508 * 120.00156 * 186.35532 * 10 8 7 13 13 H 1.09005 * 109.46825 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47036 * 240.00223 * 12 10 8 15 15 C 1.52994 * 109.47017 * 119.99672 * 12 10 8 16 16 N 1.46505 * 109.47428 * 305.00272 * 15 12 10 17 17 C 1.34770 * 119.99971 * 180.02562 * 16 15 12 18 18 O 1.21285 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99878 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.47343 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00262 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99915 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99927 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99774 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47152 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47426 * 119.99776 * 25 23 21 28 28 H 1.48501 * 109.46994 * 239.99386 * 25 23 21 29 29 H 1.09001 * 109.47133 * 270.14102 * 1 2 3 30 30 H 1.09003 * 109.47209 * 30.13669 * 1 2 3 31 31 H 1.09001 * 109.47393 * 150.13407 * 1 2 3 32 32 H 1.07993 * 126.06859 * 0.02562 * 3 2 1 33 33 H 1.07997 * 125.56472 * 179.70345 * 4 3 2 34 34 H 1.08995 * 109.47246 * 275.86131 * 11 10 8 35 35 H 1.08997 * 109.46518 * 35.86388 * 11 10 8 36 36 H 1.09001 * 109.46817 * 155.85534 * 11 10 8 37 37 H 1.09005 * 109.46893 * 299.99444 * 14 12 10 38 38 H 1.08997 * 109.47532 * 59.99701 * 14 12 10 39 39 H 1.09002 * 109.46900 * 180.02562 * 14 12 10 40 40 H 1.09005 * 109.47047 * 65.00173 * 15 12 10 41 41 H 1.08996 * 109.47109 * 185.00334 * 15 12 10 42 42 H 0.97002 * 119.99808 * 359.97438 * 16 15 12 43 43 H 1.09005 * 109.46814 * 299.99568 * 19 17 16 44 44 H 1.09001 * 109.47571 * 59.99672 * 19 17 16 45 45 H 0.96999 * 119.99839 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0067 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0086 7 6 2.3262 -1.1089 0.0032 8 6 1.8898 -2.5093 0.0070 9 8 0.7097 -2.7791 -0.1180 10 7 2.7956 -3.4970 0.1491 11 6 4.1944 -3.1721 0.4388 12 6 2.3814 -4.8958 0.0139 13 1 1.3133 -4.9395 -0.1991 14 6 2.6718 -5.6420 1.3176 15 6 3.1574 -5.5490 -1.1315 16 7 2.9744 -4.7646 -2.3553 17 6 3.5693 -5.1536 -3.5003 18 8 4.2566 -6.1528 -3.5176 19 6 3.3814 -4.3464 -4.7589 20 16 4.2994 -5.1192 -6.1140 21 6 3.9134 -4.0025 -7.4212 22 1 3.2769 -3.1505 -7.2332 23 6 4.4264 -4.2185 -8.6926 24 7 5.2017 -5.2573 -8.9218 25 14 4.0177 -3.0343 -10.0782 26 1 3.1346 -1.9568 -9.5641 27 1 5.2713 -2.4379 -10.6057 28 1 3.3220 -3.7669 -11.1665 29 1 -0.3633 0.0025 1.0277 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3634 -0.8912 -0.5117 32 1 2.0137 2.1548 0.0004 33 1 4.4972 1.3251 -0.0130 34 1 4.7164 -2.9512 -0.4922 35 1 4.2371 -2.3024 1.0944 36 1 4.6704 -4.0209 0.9298 37 1 3.7399 -5.5984 1.5310 38 1 2.1190 -5.1766 2.1336 39 1 2.3641 -6.6828 1.2168 40 1 4.2170 -5.5852 -0.8782 41 1 2.7870 -6.5617 -1.2903 42 1 2.4244 -3.9657 -2.3415 43 1 2.3218 -4.3095 -5.0121 44 1 3.7526 -3.3339 -4.6001 45 1 5.5605 -5.4080 -9.8103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756007266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:54 Heat of formation + Delta-G solvation = -12.502487 kcal Electronic energy + Delta-G solvation = -27199.196272 eV Core-core repulsion = 23344.497209 eV Total energy + Delta-G solvation = -3854.699063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83974 -39.97674 -38.91411 -36.92324 -34.37836 -32.88942 -32.43449 -32.07415 -29.76453 -29.35829 -28.03050 -26.72916 -25.97936 -25.37552 -23.28054 -21.37435 -20.56580 -20.25234 -19.25477 -18.09639 -17.86319 -17.01199 -16.50357 -16.30685 -15.90278 -15.54423 -15.03965 -14.80739 -14.47490 -14.22009 -14.06953 -13.95682 -13.60046 -13.51853 -13.39762 -13.05595 -12.97249 -12.90869 -12.70173 -12.57200 -12.45463 -12.40226 -12.18303 -11.81213 -11.78460 -11.27204 -11.07099 -11.02291 -10.75838 -10.16911 -9.81498 -9.46389 -9.20231 -9.08464 -9.00146 -8.93340 -8.40868 -8.24750 -6.50999 -6.22496 -3.93002 1.17998 2.44131 2.45915 2.87987 3.02231 3.06659 3.09240 3.21433 3.28140 3.33380 3.69983 4.17192 4.20014 4.41429 4.45422 4.67964 4.75430 4.81385 4.91630 4.93401 5.03779 5.08574 5.12907 5.13017 5.23757 5.33031 5.47294 5.54679 5.62478 5.65685 5.69159 5.69804 5.80736 5.87710 5.92310 6.08281 6.14017 6.17824 6.46844 6.56265 6.69406 6.95751 7.09490 7.59771 7.65572 7.81287 8.35286 8.57153 9.23245 10.85007 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.002975 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.027171 B = 9409.624060 C =11085.360294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.070 4.070 3 C -0.213 4.213 4 C 0.024 3.976 5 N -0.546 5.546 6 H 0.420 0.580 7 C -0.064 4.064 8 C 0.591 3.409 9 O -0.523 6.523 10 N -0.612 5.612 11 C 0.058 3.942 12 C 0.125 3.875 13 H 0.112 0.888 14 C -0.158 4.158 15 C 0.112 3.888 16 N -0.736 5.736 17 C 0.532 3.468 18 O -0.518 6.518 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 9.515 25.105 27.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.237 4.237 4 C -0.112 4.112 5 N -0.149 5.149 6 H 0.265 0.735 7 C -0.176 4.176 8 C 0.381 3.619 9 O -0.399 6.399 10 N -0.346 5.346 11 C -0.086 4.086 12 C 0.022 3.978 13 H 0.130 0.870 14 C -0.216 4.216 15 C -0.013 4.013 16 N -0.390 5.390 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.188 0.812 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.036 7.413 24.878 26.136 hybrid contribution -0.600 2.190 -0.874 2.433 sum -3.636 9.603 24.005 26.109 Atomic orbital electron populations 1.20377 0.89315 1.03277 1.02050 1.19977 0.95880 0.90763 1.01270 1.20832 0.91858 0.98848 1.12170 1.22103 0.99644 0.83423 1.06015 1.43000 1.07592 1.07443 1.56873 0.73494 1.20068 0.83872 0.93265 1.20346 1.17155 0.85382 0.83106 0.76219 1.90818 1.15989 1.82900 1.50236 1.47775 1.08814 1.06263 1.71772 1.22119 0.82683 1.02780 1.00994 1.21436 1.01663 0.79577 0.95098 0.86984 1.22066 1.02400 1.00920 0.96254 1.21670 1.00465 0.95633 0.83577 1.45944 1.53695 1.30393 1.09006 1.20308 0.78626 0.85247 0.83972 1.90700 1.37874 1.25665 1.84991 1.23526 1.06035 1.02867 0.97933 1.85348 1.62897 1.36429 0.98599 1.22916 1.36315 1.13229 0.95853 0.90886 1.24988 0.94559 0.95912 0.98097 1.70027 1.30978 1.26923 1.22404 0.86117 0.78301 0.80232 0.80869 1.19581 1.20558 1.20518 0.91716 0.91866 0.89892 0.84016 0.81187 0.91891 0.90867 0.89250 0.91939 0.91589 0.90578 0.91348 0.90204 0.76884 0.89218 0.89490 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.90 36.00 0.36 -0.59 16 2 C -0.07 -0.76 6.21 -104.16 -0.65 -1.41 16 3 C -0.21 -1.91 10.76 -39.98 -0.43 -2.34 16 4 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.55 -4.29 5.08 -9.39 -0.05 -4.33 16 6 H 0.42 2.37 4.92 -40.82 -0.20 2.17 16 7 C -0.06 -0.68 6.63 -81.98 -0.54 -1.22 16 8 C 0.59 6.75 7.33 -12.86 -0.09 6.65 16 9 O -0.52 -7.38 14.13 5.19 0.07 -7.31 16 10 N -0.61 -5.42 2.24 -175.48 -0.39 -5.82 16 11 C 0.06 0.35 7.92 59.85 0.47 0.82 16 12 C 0.13 1.12 2.79 -67.93 -0.19 0.93 16 13 H 0.11 1.18 6.92 -51.93 -0.36 0.82 16 14 C -0.16 -1.03 9.18 37.16 0.34 -0.69 16 15 C 0.11 1.24 4.97 -4.04 -0.02 1.22 16 16 N -0.74 -10.28 5.39 -60.29 -0.32 -10.61 16 17 C 0.53 10.07 7.85 -10.99 -0.09 9.98 16 18 O -0.52 -11.65 15.86 5.55 0.09 -11.56 16 19 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 22 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 25 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.99 6.37 -51.93 -0.33 0.66 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.06 0.40 7.46 -51.93 -0.39 0.01 16 35 H 0.07 0.36 5.67 -51.93 -0.29 0.06 16 36 H 0.09 0.42 6.44 -51.93 -0.33 0.08 16 37 H 0.06 0.34 6.67 -51.93 -0.35 0.00 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.40 5.24 7.87 -40.82 -0.32 4.91 16 43 H 0.09 1.78 8.14 -51.91 -0.42 1.36 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -36.83 383.32 -8.28 -45.11 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.33 Total: 4.27 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.62 Total: -2.73 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.03 Total: -46.29 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.16 Total: -18.87 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.83 -8.28 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756007266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.606 kcal (2) G-P(sol) polarization free energy of solvation -36.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds