Wall clock time and date at job start Sat Apr 11 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39838 * 126.45882 * 2 1 4 4 C 1.35456 * 107.86319 * 180.29879 * 3 2 1 5 5 N 1.35535 * 108.87179 * 359.74246 * 4 3 2 6 6 H 0.97002 * 125.67900 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64464 * 359.97438 * 5 4 3 8 8 C 1.46674 * 126.23037 * 179.97438 * 7 5 4 9 9 O 1.21698 * 119.99576 * 187.22570 * 8 7 5 10 10 N 1.34771 * 120.00249 * 7.23605 * 8 7 5 11 11 C 1.46502 * 120.00173 * 6.35270 * 10 8 7 12 12 C 1.46508 * 120.00156 * 186.35532 * 10 8 7 13 13 H 1.09005 * 109.46825 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47036 * 240.00223 * 12 10 8 15 15 C 1.52994 * 109.47017 * 119.99672 * 12 10 8 16 16 N 1.46505 * 109.47428 * 305.00272 * 15 12 10 17 17 C 1.34770 * 119.99971 * 180.02562 * 16 15 12 18 18 O 1.21285 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99878 * 180.02562 * 17 16 15 20 20 S 1.81001 * 109.47343 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00262 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99915 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99927 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99774 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47152 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47426 * 119.99776 * 25 23 21 28 28 H 1.48501 * 109.46994 * 239.99386 * 25 23 21 29 29 H 1.09001 * 109.47133 * 270.14102 * 1 2 3 30 30 H 1.09003 * 109.47209 * 30.13669 * 1 2 3 31 31 H 1.09001 * 109.47393 * 150.13407 * 1 2 3 32 32 H 1.07993 * 126.06859 * 0.02562 * 3 2 1 33 33 H 1.07997 * 125.56472 * 179.70345 * 4 3 2 34 34 H 1.08995 * 109.47246 * 275.86131 * 11 10 8 35 35 H 1.08997 * 109.46518 * 35.86388 * 11 10 8 36 36 H 1.09001 * 109.46817 * 155.85534 * 11 10 8 37 37 H 1.09005 * 109.46893 * 299.99444 * 14 12 10 38 38 H 1.08997 * 109.47532 * 59.99701 * 14 12 10 39 39 H 1.09002 * 109.46900 * 180.02562 * 14 12 10 40 40 H 1.09005 * 109.47047 * 65.00173 * 15 12 10 41 41 H 1.08996 * 109.47109 * 185.00334 * 15 12 10 42 42 H 0.97002 * 119.99808 * 359.97438 * 16 15 12 43 43 H 1.09005 * 109.46814 * 299.99568 * 19 17 16 44 44 H 1.09001 * 109.47571 * 59.99672 * 19 17 16 45 45 H 0.96999 * 119.99839 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0067 5 7 3.6283 -0.6626 -0.0052 6 1 4.4190 -1.2245 -0.0086 7 6 2.3262 -1.1089 0.0032 8 6 1.8898 -2.5093 0.0070 9 8 0.7097 -2.7791 -0.1180 10 7 2.7956 -3.4970 0.1491 11 6 4.1944 -3.1721 0.4388 12 6 2.3814 -4.8958 0.0139 13 1 1.3133 -4.9395 -0.1991 14 6 2.6718 -5.6420 1.3176 15 6 3.1574 -5.5490 -1.1315 16 7 2.9744 -4.7646 -2.3553 17 6 3.5693 -5.1536 -3.5003 18 8 4.2566 -6.1528 -3.5176 19 6 3.3814 -4.3464 -4.7589 20 16 4.2994 -5.1192 -6.1140 21 6 3.9134 -4.0025 -7.4212 22 1 3.2769 -3.1505 -7.2332 23 6 4.4264 -4.2185 -8.6926 24 7 5.2017 -5.2573 -8.9218 25 14 4.0177 -3.0343 -10.0782 26 1 3.1346 -1.9568 -9.5641 27 1 5.2713 -2.4379 -10.6057 28 1 3.3220 -3.7669 -11.1665 29 1 -0.3633 0.0025 1.0277 30 1 -0.3634 0.8888 -0.5160 31 1 -0.3634 -0.8912 -0.5117 32 1 2.0137 2.1548 0.0004 33 1 4.4972 1.3251 -0.0130 34 1 4.7164 -2.9512 -0.4922 35 1 4.2371 -2.3024 1.0944 36 1 4.6704 -4.0209 0.9298 37 1 3.7399 -5.5984 1.5310 38 1 2.1190 -5.1766 2.1336 39 1 2.3641 -6.6828 1.2168 40 1 4.2170 -5.5852 -0.8782 41 1 2.7870 -6.5617 -1.2903 42 1 2.4244 -3.9657 -2.3415 43 1 2.3218 -4.3095 -5.0121 44 1 3.7526 -3.3339 -4.6001 45 1 5.5605 -5.4080 -9.8103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756007266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:53 Heat of formation + Delta-G solvation = -37.774112 kcal Electronic energy + Delta-G solvation = -27200.292132 eV Core-core repulsion = 23344.497209 eV Total energy + Delta-G solvation = -3855.794923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.52907 -40.97935 -40.15093 -37.83508 -35.48772 -34.61412 -33.72633 -32.90732 -31.01306 -30.27610 -28.68670 -27.77165 -27.40585 -26.78754 -24.04582 -22.01553 -21.81693 -21.23257 -19.97158 -19.83805 -18.79142 -17.92709 -17.77851 -17.51380 -16.90772 -16.75592 -16.59269 -16.29565 -15.83163 -15.19366 -15.01188 -14.83069 -14.65628 -14.56263 -14.38116 -14.16767 -13.99733 -13.89342 -13.64320 -13.47077 -13.19329 -13.18853 -13.15533 -12.99486 -12.93044 -12.86431 -12.60862 -12.53426 -11.99680 -11.74170 -11.18242 -11.05308 -11.02700 -10.33169 -10.21498 -9.96436 -9.66557 -9.10108 -8.69925 -8.37729 -6.15930 0.43197 1.22998 1.39420 1.43514 1.52657 1.55843 1.73463 1.80922 2.19776 2.23850 2.25820 2.35710 2.96496 3.27184 3.45644 3.67018 3.88463 3.92955 4.01014 4.14890 4.20275 4.23782 4.26343 4.36415 4.39154 4.42732 4.49197 4.59240 4.64311 4.76474 4.87120 4.89601 4.94135 5.00785 5.17883 5.20422 5.31060 5.39257 5.42058 5.45252 5.78234 5.98646 6.17146 6.23018 6.32286 6.54314 7.00792 7.03869 7.11626 8.71712 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.002975 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.027171 B = 9409.624060 C =11085.360294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.094 4.094 3 C -0.231 4.231 4 C 0.040 3.960 5 N -0.537 5.537 6 H 0.430 0.570 7 C -0.087 4.087 8 C 0.585 3.415 9 O -0.561 6.561 10 N -0.608 5.608 11 C 0.050 3.950 12 C 0.133 3.867 13 H 0.095 0.905 14 C -0.151 4.151 15 C 0.111 3.889 16 N -0.713 5.713 17 C 0.537 3.463 18 O -0.557 6.557 19 C -0.132 4.132 20 S -0.138 6.138 21 C -0.550 4.550 22 H 0.078 0.922 23 C 0.016 3.984 24 N -0.909 5.909 25 Si 0.998 3.002 26 H -0.260 1.260 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.209 0.791 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.404 0.596 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 11.455 26.111 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.255 4.255 4 C -0.097 4.097 5 N -0.141 5.141 6 H 0.277 0.723 7 C -0.199 4.199 8 C 0.377 3.623 9 O -0.441 6.441 10 N -0.340 5.340 11 C -0.092 4.092 12 C 0.030 3.970 13 H 0.113 0.887 14 C -0.209 4.209 15 C -0.013 4.013 16 N -0.366 5.366 17 C 0.323 3.677 18 O -0.435 6.435 19 C -0.283 4.283 20 S 0.089 5.911 21 C -0.698 4.698 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.545 5.545 25 Si 0.819 3.181 26 H -0.184 1.184 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.174 0.826 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.239 0.761 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.423 9.354 25.937 27.679 hybrid contribution -0.795 1.622 -1.057 2.092 sum -3.218 10.976 24.881 27.384 Atomic orbital electron populations 1.20318 0.89699 1.02631 1.02067 1.20272 0.96216 0.91916 1.01926 1.21109 0.92362 0.99115 1.12894 1.22727 1.00383 0.83319 1.03244 1.43021 1.07006 1.07914 1.56123 0.72273 1.19999 0.85100 0.92820 1.22021 1.17371 0.85192 0.83874 0.75879 1.90795 1.17574 1.83507 1.52195 1.47814 1.09694 1.05705 1.70825 1.22351 0.80936 1.04355 1.01580 1.21344 1.00266 0.79920 0.95508 0.88726 1.22026 1.03521 1.00930 0.94420 1.21890 1.01444 0.95320 0.82639 1.45748 1.51962 1.30317 1.08578 1.19935 0.78747 0.84501 0.84526 1.90690 1.40005 1.27249 1.85571 1.23369 1.05370 1.03202 0.96386 1.85448 1.65059 1.38648 1.01968 1.23226 1.36631 1.13397 0.96510 0.90335 1.26092 0.94056 0.97753 1.00965 1.70172 1.32098 1.28942 1.23334 0.84924 0.78459 0.77774 0.76909 1.18366 1.19586 1.19815 0.91431 0.90736 0.92174 0.82627 0.77465 0.91795 0.89425 0.87330 0.90274 0.91589 0.89705 0.90376 0.90398 0.76117 0.88157 0.87823 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.88 9.90 71.23 0.71 -1.17 16 2 C -0.09 -1.99 6.21 -19.56 -0.12 -2.12 16 3 C -0.23 -3.71 10.76 22.01 0.24 -3.48 16 4 C 0.04 0.47 11.89 83.48 0.99 1.47 16 5 N -0.54 -7.17 5.08 -183.62 -0.93 -8.11 16 6 H 0.43 3.65 4.92 -92.71 -0.46 3.20 16 7 C -0.09 -1.78 6.63 40.35 0.27 -1.51 16 8 C 0.59 13.16 7.33 86.45 0.63 13.79 16 9 O -0.56 -16.29 14.13 -4.34 -0.06 -16.35 16 10 N -0.61 -9.93 2.24 -827.31 -1.86 -11.79 16 11 C 0.05 0.48 7.92 127.77 1.01 1.49 16 12 C 0.13 2.21 2.79 44.99 0.13 2.34 16 13 H 0.09 1.97 6.92 -2.38 -0.02 1.96 16 14 C -0.15 -1.64 9.18 71.98 0.66 -0.98 16 15 C 0.11 2.33 4.97 86.38 0.43 2.75 16 16 N -0.71 -19.22 5.39 -463.06 -2.49 -21.72 16 17 C 0.54 20.11 7.85 87.66 0.69 20.80 16 18 O -0.56 -25.24 15.86 -3.04 -0.05 -25.29 16 19 C -0.13 -5.47 6.16 71.24 0.44 -5.03 16 20 S -0.14 -7.74 20.57 -56.49 -1.16 -8.90 16 21 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.02 0.94 5.49 84.86 0.47 1.40 16 24 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 25 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.52 6.37 -2.39 -0.02 1.51 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.06 0.64 7.46 -2.39 -0.02 0.62 16 35 H 0.09 0.61 5.67 -2.39 -0.01 0.60 16 36 H 0.11 0.66 6.44 -2.39 -0.02 0.64 16 37 H 0.08 0.62 6.67 -2.38 -0.02 0.60 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 1.55 7.84 -2.38 -0.02 1.53 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.40 10.23 7.87 -92.71 -0.73 9.50 16 43 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -82.36 383.32 2.78 -79.57 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.15 Total: 23.53 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 7.18 Total: -1.46 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.00 Total: -97.09 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.11 Total: -41.64 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.90 kcal Total: -82.36 2.78 -79.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756007266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.799 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds