Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34270 * 126.44023 * 2 1 4 4 C 1.34483 * 108.17199 * 179.73372 * 3 2 1 5 5 C 1.47871 * 125.49165 * 179.97438 * 4 3 2 6 6 C 1.39542 * 120.14427 * 179.75082 * 5 4 3 7 7 C 1.37970 * 119.85844 * 179.74624 * 6 5 4 8 8 C 1.38359 * 120.13872 * 0.52812 * 7 6 5 9 9 C 1.38348 * 120.28524 * 359.74456 * 8 7 6 10 10 C 1.37964 * 120.14458 * 359.97438 * 9 8 7 11 11 N 1.30891 * 109.01612 * 359.97438 * 4 3 2 12 12 C 1.35772 * 108.42180 * 359.97438 * 11 4 3 13 13 C 1.47466 * 126.36961 * 179.97438 * 12 11 4 14 14 O 1.21605 * 120.00401 * 174.33234 * 13 12 11 15 15 N 1.34778 * 119.99547 * 354.34077 * 13 12 11 16 16 C 1.46497 * 120.00087 * 4.30731 * 15 13 12 17 17 C 1.50696 * 109.47355 * 83.60800 * 16 15 13 18 18 H 1.08001 * 119.99898 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00098 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46895 * 89.99957 * 21 19 17 23 23 H 1.48498 * 109.46871 * 209.99667 * 21 19 17 24 24 H 1.48495 * 109.46967 * 329.99364 * 21 19 17 25 25 C 1.46501 * 119.99779 * 184.31013 * 15 13 12 26 26 C 1.53001 * 109.47071 * 94.91632 * 25 15 13 27 27 C 1.47206 * 109.47051 * 180.02562 * 26 25 15 28 28 N 7.99251 * 89.83719 * 193.23778 * 2 1 3 29 29 H 1.08997 * 109.47127 * 0.02796 * 1 2 3 30 30 H 1.09004 * 109.47513 * 120.02840 * 1 2 3 31 31 H 1.09005 * 109.47457 * 240.02629 * 1 2 3 32 32 H 1.07998 * 120.07263 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.92973 * 180.25122 * 7 6 5 34 34 H 1.07996 * 119.85188 * 179.71815 * 8 7 6 35 35 H 1.08004 * 119.92492 * 179.97438 * 9 8 7 36 36 H 1.08009 * 120.07219 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.46912 * 203.60675 * 16 15 13 38 38 H 1.09001 * 109.47450 * 323.60021 * 16 15 13 39 39 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47256 * 214.91484 * 25 15 13 41 41 H 1.09001 * 109.47521 * 334.91913 * 25 15 13 42 42 H 1.08999 * 109.47545 * 299.99598 * 26 25 15 43 43 H 1.08999 * 109.47421 * 60.00011 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3045 1.0802 0.0000 4 6 3.5815 0.6586 0.0059 5 6 4.7742 1.5328 0.0074 6 6 6.0527 0.9738 0.0191 7 6 7.1614 1.7950 0.0151 8 6 7.0075 3.1700 0.0107 9 6 5.7427 3.7304 0.0049 10 6 4.6259 2.9204 0.0029 11 7 3.5986 -0.6502 0.0102 12 6 2.3162 -1.0960 0.0075 13 6 1.8801 -2.5047 0.0101 14 8 0.6989 -2.7754 0.1113 15 7 2.7908 -3.4922 -0.0995 16 6 4.2199 -3.1710 -0.1262 17 6 4.7265 -3.0163 1.2846 18 1 4.0513 -3.1440 2.1178 19 6 6.0516 -2.7107 1.5117 20 7 6.8737 -2.5547 0.4970 21 14 6.6793 -2.5183 3.2606 22 1 7.1537 -3.8325 3.7636 23 1 7.8020 -1.5465 3.2793 24 1 5.5813 -2.0228 4.1288 25 6 2.3516 -4.8867 -0.1920 26 6 2.2648 -5.2975 -1.6633 27 6 1.8229 -6.6986 -1.7563 28 7 1.4842 -7.7801 -1.8302 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 6.1741 -0.0993 0.0266 33 1 8.1515 1.3635 0.0200 34 1 7.8786 3.8084 0.0122 35 1 5.6293 4.8045 0.0019 36 1 3.6390 3.3592 -0.0021 37 1 4.7638 -3.9754 -0.6214 38 1 4.3729 -2.2396 -0.6714 39 1 7.8060 -2.3400 0.6568 40 1 3.0671 -5.5279 0.3226 41 1 1.3710 -4.9905 0.2725 42 1 1.5492 -4.6564 -2.1780 43 1 3.2453 -5.1939 -2.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067231245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = 50.968275 kcal Electronic energy + Delta-G solvation = -29180.744368 eV Core-core repulsion = 25193.353653 eV Total energy + Delta-G solvation = -3987.390716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.93214 -39.16575 -38.75015 -36.69160 -35.30917 -34.39348 -32.80052 -32.60336 -31.10735 -30.75896 -30.59883 -27.18750 -26.76543 -24.65454 -23.46879 -22.78703 -22.49701 -21.49744 -20.66050 -18.84610 -17.58147 -17.18531 -16.60900 -16.59160 -16.16514 -15.67836 -15.40730 -15.03520 -14.68980 -14.55415 -14.30661 -14.25084 -13.62545 -13.40500 -13.23051 -13.18593 -13.05229 -12.82720 -12.54299 -12.44941 -12.30765 -12.27071 -12.09351 -11.68350 -11.49160 -11.27851 -10.96657 -10.91184 -10.81055 -10.73190 -10.64816 -10.18503 -9.79079 -9.56031 -9.36441 -9.30884 -8.77223 -8.37024 -8.00453 -7.70237 -6.05651 -4.05974 0.92072 1.59088 1.72267 2.75236 2.77131 2.88181 2.93932 3.26634 3.33794 3.38590 3.59433 3.83166 4.09297 4.21899 4.37713 4.43727 4.91461 5.04531 5.09650 5.14805 5.26996 5.29551 5.30738 5.33406 5.42072 5.60395 5.64547 5.65760 5.68820 5.77541 5.97479 6.03540 6.16933 6.18103 6.23008 6.29972 6.40690 6.58174 6.66622 6.74662 6.81521 7.16544 7.41436 7.65044 7.70167 7.86033 8.01780 8.20332 8.22477 8.76404 8.96293 9.55901 11.02003 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.004531 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.617141 B = 6178.077585 C = 7985.896324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.018 3.982 3 O -0.200 6.200 4 C 0.205 3.795 5 C -0.011 4.011 6 C -0.063 4.063 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.132 4.132 10 C -0.098 4.098 11 N -0.371 5.371 12 C -0.050 4.050 13 C 0.602 3.398 14 O -0.565 6.565 15 N -0.579 5.579 16 C 0.223 3.777 17 C -0.505 4.505 18 H 0.051 0.949 19 C 0.074 3.926 20 N -0.889 5.889 21 Si 0.879 3.121 22 H -0.282 1.282 23 H -0.285 1.285 24 H -0.277 1.277 25 C 0.123 3.877 26 C -0.045 4.045 27 C 0.222 3.778 28 N -0.450 5.450 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.168 0.832 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.031 0.969 38 H 0.081 0.919 39 H 0.260 0.740 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 11.176 -3.848 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 O -0.088 6.088 4 C 0.001 3.999 5 C -0.012 4.012 6 C -0.082 4.082 7 C -0.140 4.140 8 C -0.128 4.128 9 C -0.150 4.150 10 C -0.118 4.118 11 N -0.099 5.099 12 C -0.173 4.173 13 C 0.390 3.610 14 O -0.447 6.447 15 N -0.308 5.308 16 C 0.105 3.895 17 C -0.544 4.544 18 H 0.069 0.931 19 C -0.128 4.128 20 N -0.529 5.529 21 Si 0.708 3.292 22 H -0.209 1.209 23 H -0.210 1.210 24 H -0.203 1.203 25 C -0.002 4.002 26 C -0.086 4.086 27 C -0.096 4.096 28 N -0.127 5.127 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.185 0.815 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.051 9.071 -3.945 10.690 hybrid contribution 0.263 1.010 1.205 1.594 sum -3.789 10.081 -2.741 11.113 Atomic orbital electron populations 1.20322 0.83003 1.03040 1.05135 1.23611 0.94721 0.83651 1.01899 1.84282 1.17955 1.36127 1.70405 1.24009 0.81958 0.89817 1.04124 1.17310 0.88097 0.90591 1.05214 1.21860 0.89735 1.03512 0.93093 1.21177 0.99095 0.93206 1.00489 1.21306 0.97225 0.95302 0.98980 1.20930 0.92249 0.99497 1.02302 1.21163 0.99322 0.92039 0.99267 1.71770 1.19718 1.05974 1.12392 1.21478 0.88876 0.95347 1.11553 1.16753 0.84813 0.83016 0.76460 1.90705 1.16901 1.83653 1.53403 1.48094 1.10007 1.04014 1.68668 1.20053 0.72088 0.98847 0.98547 1.21253 0.94288 1.46986 0.91861 0.93061 1.24683 0.96608 0.95277 0.96208 1.69910 1.04582 1.48940 1.29490 0.86793 0.78619 0.77929 0.85891 1.20860 1.21042 1.20259 1.21178 1.02462 0.83709 0.92850 1.19778 1.03959 0.83759 1.01143 1.29080 0.92764 0.94864 0.92914 1.81166 1.10011 1.12681 1.08886 0.90986 0.88805 0.88555 0.81465 0.85304 0.86071 0.85877 0.85716 0.95070 0.90129 0.93018 0.89306 0.89564 0.87430 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 9.14 36.00 0.33 -0.40 16 2 C 0.02 0.29 7.43 -35.03 -0.26 0.03 16 3 O -0.20 -3.37 10.45 5.31 0.06 -3.31 16 4 C 0.21 3.83 7.88 -14.01 -0.11 3.72 16 5 C -0.01 -0.19 5.87 -104.98 -0.62 -0.80 16 6 C -0.06 -1.11 9.68 -39.19 -0.38 -1.49 16 7 C -0.12 -1.76 10.03 -39.64 -0.40 -2.16 16 8 C -0.11 -1.31 10.04 -39.50 -0.40 -1.71 16 9 C -0.13 -1.54 10.03 -39.64 -0.40 -1.94 16 10 C -0.10 -1.34 9.71 -39.19 -0.38 -1.72 16 11 N -0.37 -7.71 6.75 -8.26 -0.06 -7.77 16 12 C -0.05 -0.98 6.65 -83.08 -0.55 -1.53 16 13 C 0.60 11.83 7.61 -12.50 -0.10 11.73 16 14 O -0.57 -11.08 15.09 5.27 0.08 -11.00 16 15 N -0.58 -11.11 2.47 -176.32 -0.44 -11.54 16 16 C 0.22 4.93 4.78 -5.20 -0.02 4.91 16 17 C -0.50 -12.55 8.45 -34.44 -0.29 -12.85 16 18 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 19 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -22.42 12.64 55.43 0.70 -21.72 16 21 Si 0.88 20.34 29.54 -169.99 -5.02 15.32 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.12 1.94 5.42 -4.04 -0.02 1.92 16 26 C -0.05 -0.57 6.03 -29.51 -0.18 -0.75 16 27 C 0.22 3.12 15.43 -20.77 -0.32 2.80 16 28 N -0.45 -7.39 18.54 42.14 0.78 -6.61 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.10 1.22 7.99 -51.93 -0.41 0.80 16 32 H 0.17 3.50 7.16 -52.49 -0.38 3.12 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 1.48 7.89 -52.48 -0.41 1.07 16 37 H 0.03 0.70 8.02 -51.93 -0.42 0.29 16 38 H 0.08 1.89 5.26 -51.93 -0.27 1.62 16 39 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 40 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 41 H 0.09 1.37 7.23 -51.93 -0.38 0.99 16 42 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -29.18 380.97 -7.54 -36.72 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.20 Total: 2.66 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -4.19 Total: 1.52 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.99 Total: -47.64 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.14 Total: -14.32 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.18 -7.54 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.690 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds