Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34270 * 126.44023 * 2 1 4 4 C 1.34483 * 108.17199 * 179.73372 * 3 2 1 5 5 C 1.47871 * 125.49165 * 179.97438 * 4 3 2 6 6 C 1.39542 * 120.14427 * 179.75082 * 5 4 3 7 7 C 1.37970 * 119.85844 * 179.74624 * 6 5 4 8 8 C 1.38359 * 120.13872 * 0.52812 * 7 6 5 9 9 C 1.38348 * 120.28524 * 359.74456 * 8 7 6 10 10 C 1.37964 * 120.14458 * 359.97438 * 9 8 7 11 11 N 1.30891 * 109.01612 * 359.97438 * 4 3 2 12 12 C 1.35772 * 108.42180 * 359.97438 * 11 4 3 13 13 C 1.47466 * 126.36961 * 179.97438 * 12 11 4 14 14 O 1.21605 * 120.00401 * 174.33234 * 13 12 11 15 15 N 1.34778 * 119.99547 * 354.34077 * 13 12 11 16 16 C 1.46497 * 120.00087 * 4.30731 * 15 13 12 17 17 C 1.50696 * 109.47355 * 83.60800 * 16 15 13 18 18 H 1.08001 * 119.99898 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00401 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99730 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00098 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46895 * 89.99957 * 21 19 17 23 23 H 1.48498 * 109.46871 * 209.99667 * 21 19 17 24 24 H 1.48495 * 109.46967 * 329.99364 * 21 19 17 25 25 C 1.46501 * 119.99779 * 184.31013 * 15 13 12 26 26 C 1.53001 * 109.47071 * 94.91632 * 25 15 13 27 27 C 1.47206 * 109.47051 * 180.02562 * 26 25 15 28 28 N 7.99251 * 89.83719 * 193.23778 * 2 1 3 29 29 H 1.08997 * 109.47127 * 0.02796 * 1 2 3 30 30 H 1.09004 * 109.47513 * 120.02840 * 1 2 3 31 31 H 1.09005 * 109.47457 * 240.02629 * 1 2 3 32 32 H 1.07998 * 120.07263 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.92973 * 180.25122 * 7 6 5 34 34 H 1.07996 * 119.85188 * 179.71815 * 8 7 6 35 35 H 1.08004 * 119.92492 * 179.97438 * 9 8 7 36 36 H 1.08009 * 120.07219 * 180.02562 * 10 9 8 37 37 H 1.09003 * 109.46912 * 203.60675 * 16 15 13 38 38 H 1.09001 * 109.47450 * 323.60021 * 16 15 13 39 39 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47256 * 214.91484 * 25 15 13 41 41 H 1.09001 * 109.47521 * 334.91913 * 25 15 13 42 42 H 1.08999 * 109.47545 * 299.99598 * 26 25 15 43 43 H 1.08999 * 109.47421 * 60.00011 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3045 1.0802 0.0000 4 6 3.5815 0.6586 0.0059 5 6 4.7742 1.5328 0.0074 6 6 6.0527 0.9738 0.0191 7 6 7.1614 1.7950 0.0151 8 6 7.0075 3.1700 0.0107 9 6 5.7427 3.7304 0.0049 10 6 4.6259 2.9204 0.0029 11 7 3.5986 -0.6502 0.0102 12 6 2.3162 -1.0960 0.0075 13 6 1.8801 -2.5047 0.0101 14 8 0.6989 -2.7754 0.1113 15 7 2.7908 -3.4922 -0.0995 16 6 4.2199 -3.1710 -0.1262 17 6 4.7265 -3.0163 1.2846 18 1 4.0513 -3.1440 2.1178 19 6 6.0516 -2.7107 1.5117 20 7 6.8737 -2.5547 0.4970 21 14 6.6793 -2.5183 3.2606 22 1 7.1537 -3.8325 3.7636 23 1 7.8020 -1.5465 3.2793 24 1 5.5813 -2.0228 4.1288 25 6 2.3516 -4.8867 -0.1920 26 6 2.2648 -5.2975 -1.6633 27 6 1.8229 -6.6986 -1.7563 28 7 1.4842 -7.7801 -1.8302 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 6.1741 -0.0993 0.0266 33 1 8.1515 1.3635 0.0200 34 1 7.8786 3.8084 0.0122 35 1 5.6293 4.8045 0.0019 36 1 3.6390 3.3592 -0.0021 37 1 4.7638 -3.9754 -0.6214 38 1 4.3729 -2.2396 -0.6714 39 1 7.8060 -2.3400 0.6568 40 1 3.0671 -5.5279 0.3226 41 1 1.3710 -4.9905 0.2725 42 1 1.5492 -4.6564 -2.1780 43 1 3.2453 -5.1939 -2.1280 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067231245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = 35.714637 kcal Electronic energy + Delta-G solvation = -29181.405816 eV Core-core repulsion = 25193.353653 eV Total energy + Delta-G solvation = -3988.052163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.28677 -40.64666 -39.84043 -37.95488 -36.82711 -35.77067 -34.55537 -33.88717 -32.45617 -31.83954 -31.72413 -28.95377 -28.03006 -25.94021 -25.05783 -24.29668 -23.61172 -22.73829 -21.95085 -20.24985 -18.95573 -18.48725 -18.18415 -17.94641 -17.72956 -16.99207 -16.73429 -16.26143 -16.20452 -15.86416 -15.72816 -15.57956 -14.86822 -14.60179 -14.49977 -14.31630 -14.24146 -14.18601 -14.00115 -13.67434 -13.59450 -13.58558 -13.46387 -13.07755 -12.95803 -12.72712 -12.64967 -12.30030 -12.18949 -12.13080 -11.91334 -11.81146 -11.61047 -11.15926 -10.86137 -10.56038 -10.25827 -9.85396 -9.50998 -9.05647 -8.00129 -6.04142 -0.27157 0.39344 0.51709 1.37518 1.42016 1.42860 1.47814 1.48353 1.65920 1.77739 2.18279 2.40051 2.51248 2.93346 2.97956 3.16784 3.32488 3.68038 3.73962 4.04717 4.10212 4.13634 4.14741 4.29201 4.31692 4.49409 4.53438 4.55225 4.67767 4.68493 4.78998 4.90114 4.99267 5.01497 5.04352 5.09443 5.17257 5.23185 5.52078 5.58368 5.61475 5.68038 5.93820 5.95599 6.06639 6.32490 6.50239 6.53787 6.68378 7.01314 7.27139 7.59159 9.06292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009793 B = 0.004531 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.617141 B = 6178.077585 C = 7985.896324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.035 3.965 3 O -0.192 6.192 4 C 0.200 3.800 5 C -0.037 4.037 6 C -0.094 4.094 7 C -0.132 4.132 8 C -0.096 4.096 9 C -0.119 4.119 10 C -0.095 4.095 11 N -0.409 5.409 12 C -0.093 4.093 13 C 0.599 3.401 14 O -0.569 6.569 15 N -0.583 5.583 16 C 0.242 3.758 17 C -0.511 4.511 18 H 0.029 0.971 19 C 0.046 3.954 20 N -0.899 5.899 21 Si 0.919 3.081 22 H -0.280 1.280 23 H -0.278 1.278 24 H -0.290 1.290 25 C 0.121 3.879 26 C -0.029 4.029 27 C 0.247 3.753 28 N -0.487 5.487 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.143 0.857 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.262 0.738 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 13.989 -4.139 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.022 4.022 3 O -0.080 6.080 4 C -0.005 4.005 5 C -0.038 4.038 6 C -0.113 4.113 7 C -0.149 4.149 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.115 4.115 11 N -0.137 5.137 12 C -0.215 4.215 13 C 0.388 3.612 14 O -0.451 6.451 15 N -0.311 5.311 16 C 0.122 3.878 17 C -0.550 4.550 18 H 0.047 0.953 19 C -0.154 4.154 20 N -0.540 5.540 21 Si 0.747 3.253 22 H -0.206 1.206 23 H -0.203 1.203 24 H -0.216 1.216 25 C -0.003 4.003 26 C -0.070 4.070 27 C -0.071 4.071 28 N -0.165 5.165 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.161 0.839 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.309 11.861 -4.241 13.313 hybrid contribution 0.347 0.264 1.315 1.385 sum -3.962 12.125 -2.926 13.087 Atomic orbital electron populations 1.20529 0.79797 1.05394 1.05456 1.24347 0.96175 0.82735 0.98933 1.84297 1.17474 1.35974 1.70235 1.24409 0.82911 0.89689 1.03500 1.17485 0.87037 0.91962 1.07365 1.21630 0.91474 1.02064 0.96130 1.21329 0.98352 0.94522 1.00745 1.21728 0.98986 0.94258 0.96443 1.21431 0.91185 1.01356 0.99708 1.21440 1.01174 0.90568 0.98296 1.71667 1.20747 1.07383 1.13865 1.21674 0.89347 0.96063 1.14391 1.16856 0.84824 0.83312 0.76227 1.90680 1.16713 1.83865 1.53823 1.47997 1.08869 1.05326 1.68942 1.19628 0.73567 0.97942 0.96691 1.21289 0.94096 1.47145 0.92474 0.95308 1.25069 0.96880 0.95319 0.98175 1.69950 1.04669 1.49090 1.30243 0.86189 0.77890 0.77903 0.83315 1.20563 1.20274 1.21627 1.21271 1.02124 0.82004 0.94946 1.19673 1.05177 0.83027 0.99142 1.29122 0.91575 0.94624 0.91745 1.81194 1.11460 1.13810 1.10075 0.87662 0.87751 0.88588 0.85522 0.84759 0.82252 0.81663 0.83891 0.95787 0.91313 0.92900 0.89725 0.89573 0.85734 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.27 9.14 71.23 0.65 -0.62 16 2 C 0.04 1.15 7.43 25.22 0.19 1.34 16 3 O -0.19 -6.39 10.45 -3.92 -0.04 -6.43 16 4 C 0.20 7.63 7.88 87.39 0.69 8.32 16 5 C -0.04 -1.27 5.87 -20.10 -0.12 -1.39 16 6 C -0.09 -3.41 9.68 22.52 0.22 -3.19 16 7 C -0.13 -3.73 10.03 22.23 0.22 -3.50 16 8 C -0.10 -1.98 10.04 22.32 0.22 -1.75 16 9 C -0.12 -2.31 10.03 22.23 0.22 -2.08 16 10 C -0.10 -2.39 9.71 22.52 0.22 -2.17 16 11 N -0.41 -17.73 6.75 -294.25 -1.99 -19.72 16 12 C -0.09 -3.74 6.65 40.50 0.27 -3.47 16 13 C 0.60 23.95 7.61 86.67 0.66 24.61 16 14 O -0.57 -22.19 15.09 -4.05 -0.06 -22.25 16 15 N -0.58 -22.90 2.47 -830.00 -2.05 -24.95 16 16 C 0.24 11.10 4.78 85.63 0.41 11.51 16 17 C -0.51 -26.44 8.45 25.60 0.22 -26.22 16 18 H 0.03 1.59 7.81 -2.91 -0.02 1.56 16 19 C 0.05 2.38 5.46 84.65 0.46 2.84 16 20 N -0.90 -46.79 12.64 21.45 0.27 -46.52 16 21 Si 0.92 42.65 29.54 68.60 2.03 44.67 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 C 0.12 3.83 5.42 86.38 0.47 4.30 16 26 C -0.03 -0.72 6.03 28.79 0.17 -0.54 16 27 C 0.25 6.77 15.43 89.45 1.38 8.15 16 28 N -0.49 -15.82 18.54 20.00 0.37 -15.45 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.10 2.26 7.99 -2.38 -0.02 2.25 16 32 H 0.13 5.68 7.16 -2.91 -0.02 5.66 16 33 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.14 2.99 7.89 -2.91 -0.02 2.96 16 37 H 0.02 1.12 8.02 -2.39 -0.02 1.11 16 38 H 0.07 3.41 5.26 -2.39 -0.01 3.39 16 39 H 0.26 13.06 8.31 -92.71 -0.77 12.28 16 40 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 41 H 0.09 2.73 7.23 -2.39 -0.02 2.71 16 42 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -66.27 380.97 6.13 -60.14 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 1.05 Total: 14.37 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.55 Total: 16.13 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -3.40 Total: -106.64 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.10 Total: -28.67 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -66.27 6.13 -60.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.855 kcal (2) G-P(sol) polarization free energy of solvation -66.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds