Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34474 * 126.17192 * 2 1 4 4 C 1.30254 * 108.70380 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.62124 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47486 * 89.99489 * 5 4 3 7 7 C 1.46897 * 111.00156 * 190.00183 * 6 5 4 8 8 C 1.53241 * 109.33973 * 187.25232 * 7 6 5 9 9 N 1.47075 * 108.52064 * 306.17201 * 8 7 6 10 10 C 1.34780 * 120.87669 * 231.18923 * 9 8 7 11 11 O 1.21280 * 120.00423 * 359.97438 * 10 9 8 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47156 * 179.97438 * 12 10 9 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00026 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00056 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99640 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47315 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47332 * 119.99854 * 18 16 14 21 21 H 1.48499 * 109.47328 * 240.00154 * 18 16 14 22 22 C 1.47074 * 118.24014 * 51.45789 * 9 8 7 23 23 C 1.46904 * 110.99901 * 314.30250 * 6 5 4 24 24 O 1.33966 * 108.76111 * 0.22172 * 4 3 2 25 25 C 1.34331 * 126.15964 * 180.02562 * 2 1 3 26 26 C 1.50701 * 126.44903 * 359.97438 * 25 2 1 27 27 H 1.09007 * 109.47068 * 89.97323 * 1 2 3 28 28 H 1.08999 * 109.47799 * 209.98117 * 1 2 3 29 29 H 1.09001 * 109.46888 * 329.98394 * 1 2 3 30 30 H 1.09001 * 109.46921 * 329.99106 * 5 4 3 31 31 H 1.09003 * 109.46879 * 209.99646 * 5 4 3 32 32 H 1.09001 * 109.49120 * 67.28868 * 7 6 5 33 33 H 1.09003 * 109.48945 * 307.21315 * 7 6 5 34 34 H 1.09003 * 109.62612 * 186.45868 * 8 7 6 35 35 H 1.09001 * 109.78411 * 65.97535 * 8 7 6 36 36 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 37 37 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 38 38 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.63016 * 68.25422 * 22 9 8 40 40 H 1.09001 * 109.62513 * 188.83332 * 22 9 8 41 41 H 1.08997 * 109.49121 * 292.70801 * 23 6 5 42 42 H 1.09004 * 109.48974 * 52.76073 * 23 6 5 43 43 H 1.09001 * 109.47149 * 89.99413 * 26 25 2 44 44 H 1.08995 * 109.47370 * 210.00007 * 26 25 2 45 45 H 1.09000 * 109.46643 * 329.99716 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0855 0.0000 4 6 3.5431 0.6946 -0.0006 5 6 4.7481 1.5996 -0.0013 6 7 5.1403 1.8941 1.3834 7 6 6.1557 2.9546 1.4288 8 6 6.6679 3.1057 2.8651 9 7 5.5139 3.3111 3.7535 10 6 5.4852 4.3402 4.6234 11 8 6.4193 5.1116 4.6813 12 6 4.2928 4.5316 5.5249 13 16 4.5533 5.9872 6.5688 14 6 3.0533 5.9733 7.4929 15 1 2.3162 5.2042 7.3147 16 6 2.8182 6.9514 8.4494 17 7 3.7162 7.8890 8.6662 18 14 1.2276 6.9371 9.4287 19 1 0.3912 5.7882 8.9976 20 1 1.5380 6.8088 10.8751 21 1 0.4888 8.2032 9.1914 22 6 4.3948 2.3603 3.6717 23 6 3.9694 2.2421 2.1995 24 8 3.5733 -0.6448 -0.0058 25 6 2.2996 -1.0846 -0.0005 26 6 1.8491 -2.5227 -0.0006 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3635 -0.8901 0.5135 29 1 -0.3633 0.8899 0.5141 30 1 4.5039 2.5293 -0.5153 31 1 5.5728 1.1061 -0.5154 32 1 5.7142 3.8952 1.0992 33 1 6.9854 2.6921 0.7724 34 1 7.3355 3.9651 2.9273 35 1 7.2032 2.2039 3.1627 36 1 3.3982 4.6742 4.9187 37 1 4.1684 3.6508 6.1548 38 1 3.5522 8.5724 9.3349 39 1 4.7137 1.3865 4.0432 40 1 3.5588 2.7268 4.2674 41 1 3.5584 3.1925 1.8592 42 1 3.2134 1.4630 2.1017 43 1 1.7400 -2.8692 -1.0283 44 1 2.5899 -3.1355 0.5128 45 1 0.8914 -2.6034 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264464582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -25.966505 kcal Electronic energy + Delta-G solvation = -26839.226776 eV Core-core repulsion = 22983.943869 eV Total energy + Delta-G solvation = -3855.282907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.41998 -41.24322 -39.21215 -36.25399 -36.06258 -34.60197 -33.98944 -32.63362 -31.09142 -30.19276 -29.73947 -27.72243 -26.97460 -25.14572 -24.66054 -22.75397 -22.48739 -21.47707 -20.38434 -19.54806 -18.44266 -17.90611 -17.61071 -17.00215 -16.88838 -16.75534 -16.33695 -16.14294 -16.11524 -15.72473 -15.17415 -14.96103 -14.71038 -14.59650 -14.49483 -14.20651 -13.90036 -13.83630 -13.60693 -13.31820 -13.23073 -13.17833 -13.12833 -12.92532 -12.89258 -12.63462 -12.50988 -12.36327 -12.31918 -11.86240 -11.71283 -11.53451 -11.17242 -10.93289 -10.29563 -9.96612 -9.62100 -9.37998 -8.69493 -8.36265 -6.14772 0.36177 1.22730 1.40559 1.43472 1.49254 1.53602 1.56284 1.65628 2.02645 2.25499 2.70509 2.96858 2.97917 3.21058 3.57186 3.75565 3.77284 3.85428 3.92101 4.05271 4.09674 4.19753 4.20922 4.27174 4.33739 4.39855 4.45393 4.50186 4.61762 4.62537 4.63480 4.74785 4.76449 4.77887 4.88073 4.97623 4.99158 5.07267 5.16608 5.40338 5.40872 5.42737 5.67681 5.75863 6.18237 6.21682 6.71266 7.04926 7.07249 8.73301 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.002519 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.704730 B =11113.882209 C =12838.595220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.042 4.042 3 N -0.501 5.501 4 C 0.184 3.816 5 C 0.153 3.847 6 N -0.533 5.533 7 C 0.052 3.948 8 C 0.114 3.886 9 N -0.610 5.610 10 C 0.535 3.465 11 O -0.562 6.562 12 C -0.125 4.125 13 S -0.148 6.148 14 C -0.545 4.545 15 H 0.081 0.919 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.257 1.257 20 H -0.273 1.273 21 H -0.273 1.273 22 C 0.113 3.887 23 C 0.051 3.949 24 O -0.204 6.204 25 C -0.049 4.049 26 C -0.067 4.067 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.036 0.964 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.272 0.728 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.033 0.967 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -24.115 -22.172 32.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.162 4.162 3 N -0.232 5.232 4 C -0.023 4.023 5 C 0.025 3.975 6 N -0.259 5.259 7 C -0.076 4.076 8 C -0.008 4.008 9 N -0.345 5.345 10 C 0.323 3.677 11 O -0.440 6.440 12 C -0.276 4.276 13 S 0.079 5.921 14 C -0.693 4.693 15 H 0.099 0.901 16 C -0.192 4.192 17 N -0.547 5.547 18 Si 0.821 3.179 19 H -0.181 1.181 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.010 4.010 23 C -0.078 4.078 24 O -0.090 6.090 25 C -0.103 4.103 26 C -0.123 4.123 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.055 0.945 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.265 -22.664 -21.828 31.548 hybrid contribution -1.873 -0.232 0.345 1.919 sum -4.138 -22.896 -21.482 31.668 Atomic orbital electron populations 1.20211 0.84753 1.04057 1.03582 1.22056 0.99301 0.87567 1.07227 1.70401 1.01316 1.32790 1.18681 1.26129 0.95265 0.79538 1.01353 1.20602 0.90807 0.95242 0.90815 1.62161 1.11644 1.42854 1.09268 1.22519 0.96014 0.92119 0.96943 1.21817 0.87726 1.03011 0.88228 1.48171 1.21053 1.27236 1.38039 1.20079 0.87285 0.80113 0.80208 1.90671 1.38631 1.45374 1.69340 1.23368 0.99707 1.03857 1.00689 1.85543 1.28623 1.33020 1.44883 1.23209 1.04490 1.16879 1.24721 0.90057 1.26141 1.01704 0.93858 0.97465 1.70188 1.36405 1.14713 1.33406 0.84892 0.76720 0.78725 0.77525 1.18068 1.19783 1.19883 1.22066 0.89015 0.93401 0.96495 1.22487 0.92447 1.00046 0.92781 1.84402 1.30992 1.23916 1.69735 1.23985 0.80083 0.99858 1.06332 1.20502 1.02924 0.83807 1.05067 0.89847 0.88344 0.91645 0.89829 0.84903 0.94534 0.85538 0.89727 0.89178 0.87929 0.87556 0.91942 0.89142 0.89006 0.94846 0.89969 0.88223 0.89705 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.22 71.23 0.73 -0.13 16 2 C -0.04 -0.79 7.11 41.26 0.29 -0.49 16 3 N -0.50 -11.50 10.31 -291.99 -3.01 -14.51 16 4 C 0.18 3.69 6.13 88.34 0.54 4.23 16 5 C 0.15 2.32 5.90 85.56 0.50 2.82 16 6 N -0.53 -9.58 4.77 -898.86 -4.29 -13.87 16 7 C 0.05 0.89 5.58 86.38 0.48 1.37 16 8 C 0.11 2.64 6.60 86.35 0.57 3.21 16 9 N -0.61 -17.66 3.00 -817.07 -2.45 -20.11 16 10 C 0.54 21.08 7.73 87.66 0.68 21.76 16 11 O -0.56 -26.79 15.31 -3.03 -0.05 -26.84 16 12 C -0.13 -5.25 4.52 71.24 0.32 -4.92 16 13 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 14 C -0.55 -31.65 9.50 67.96 0.65 -31.01 16 15 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 16 C 0.01 0.75 5.49 84.86 0.47 1.22 16 17 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 18 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.11 2.64 6.53 86.50 0.57 3.21 16 23 C 0.05 1.12 5.15 86.54 0.45 1.57 16 24 O -0.20 -4.05 10.78 -3.77 -0.04 -4.09 16 25 C -0.05 -0.81 7.39 24.79 0.18 -0.62 16 26 C -0.07 -0.46 10.22 71.24 0.73 0.27 16 27 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.10 0.68 7.17 -2.39 -0.02 0.67 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.13 1.32 8.11 -2.39 -0.02 1.31 16 34 H 0.08 2.26 7.06 -2.39 -0.02 2.24 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 3.98 7.67 -2.39 -0.02 3.97 16 37 H 0.11 4.07 7.99 -2.40 -0.02 4.05 16 38 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.18 6.02 -2.39 -0.01 2.17 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.89 5.87 -2.38 -0.01 1.88 16 43 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.11 0.34 7.17 -2.39 -0.02 0.32 16 Total: -1.00 -81.78 381.43 -0.54 -82.32 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.00 Total: 14.26 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 7.15 Total: 2.48 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -9.47 Total: -104.68 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.09 Total: -30.93 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.78 -0.54 -82.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264464582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.356 kcal (2) G-P(sol) polarization free energy of solvation -81.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds