Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 C 1.50705 * 124.91168 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46697 * 90.00078 * 5 4 3 7 7 N 1.46507 * 109.47017 * 180.02562 * 6 5 4 8 8 C 1.34767 * 120.00021 * 180.02562 * 7 6 5 9 9 O 1.21352 * 120.00234 * 359.97438 * 8 7 6 10 10 C 1.49452 * 120.00021 * 179.97438 * 8 7 6 11 11 O 1.21352 * 119.99744 * 0.02562 * 10 8 7 12 12 N 1.34771 * 120.00330 * 179.97438 * 10 8 7 13 13 C 1.46499 * 120.00328 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.47365 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47220 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47196 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99901 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00093 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99667 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47269 * 59.99907 * 20 18 16 22 22 H 1.48500 * 109.46974 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47184 * 299.99645 * 20 18 16 24 24 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 25 25 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 26 26 C 1.50700 * 126.03597 * 0.25055 * 25 2 1 27 27 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 30 30 H 1.08994 * 109.47279 * 209.99791 * 5 4 3 31 31 H 1.09001 * 109.47408 * 330.00386 * 5 4 3 32 32 H 1.09005 * 109.47501 * 299.99332 * 6 5 4 33 33 H 1.08989 * 109.47322 * 60.00086 * 6 5 4 34 34 H 0.97002 * 119.99221 * 359.97438 * 7 6 5 35 35 H 0.97007 * 119.99945 * 0.02562 * 12 10 8 36 36 H 1.08998 * 109.47257 * 300.00745 * 13 12 10 37 37 H 1.09001 * 109.47022 * 60.00660 * 13 12 10 38 38 H 1.09002 * 109.46713 * 300.00079 * 14 13 12 39 39 H 1.08994 * 109.46834 * 59.99877 * 14 13 12 40 40 H 1.09007 * 109.46963 * 300.00002 * 15 14 13 41 41 H 1.08994 * 109.47047 * 59.99477 * 15 14 13 42 42 H 0.97006 * 119.99727 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.47176 * 90.00027 * 26 25 2 44 44 H 1.09000 * 109.46916 * 209.99905 * 26 25 2 45 45 H 1.08999 * 109.47044 * 329.99869 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 6 4.4835 2.1272 0.0058 6 6 4.8092 2.5190 1.4485 7 7 5.7610 3.6328 1.4490 8 6 6.1947 4.1481 2.6163 9 8 5.7965 3.6898 3.6671 10 6 7.1660 5.2839 2.6168 11 8 7.5638 5.7425 1.5661 12 7 7.5993 5.7996 3.7841 13 6 8.5519 6.9126 3.7846 14 6 8.8780 7.3042 5.2273 15 6 9.8724 8.4671 5.2278 16 6 10.1941 8.8524 6.6487 17 1 9.7349 8.3213 7.4694 18 6 11.0738 9.8836 6.9010 19 7 11.6326 10.5306 5.9017 20 14 11.4731 10.3607 8.6624 21 1 12.0714 9.1982 9.3667 22 1 12.4381 11.4894 8.6629 23 1 10.2276 10.7734 9.3579 24 16 3.9332 -0.6730 0.0121 25 6 2.2300 -1.1239 0.0058 26 6 1.6847 -2.5288 0.0078 27 1 -0.3633 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 5.3979 1.8233 -0.5034 31 1 4.0453 2.9803 -0.5122 32 1 3.8947 2.8230 1.9579 33 1 5.2474 1.6661 1.9666 34 1 6.0795 3.9988 0.6090 35 1 7.2810 5.4333 4.6241 36 1 9.4664 6.6084 3.2755 37 1 8.1141 7.7657 3.2664 38 1 7.9636 7.6083 5.7367 39 1 9.3159 6.4510 5.7452 40 1 10.7869 8.1633 4.7181 41 1 9.4341 9.3201 4.7099 42 1 12.2518 11.2559 6.0792 43 1 1.5570 -2.8705 -1.0194 44 1 2.3811 -3.1881 0.5260 45 1 0.7217 -2.5441 0.5181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286770721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -54.266946 kcal Electronic energy + Delta-G solvation = -24809.333205 eV Core-core repulsion = 20952.823099 eV Total energy + Delta-G solvation = -3856.510106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69901 -40.40492 -38.59828 -36.35021 -35.55102 -34.06023 -33.31541 -31.49557 -31.25114 -30.00508 -27.40647 -26.24761 -25.27920 -24.00634 -22.63164 -22.16960 -20.79318 -20.22074 -19.37619 -18.55050 -18.20600 -17.02489 -16.35962 -16.25673 -15.99983 -15.55299 -15.32384 -15.15233 -15.00232 -14.45620 -14.45123 -13.97210 -13.77664 -13.69809 -13.56059 -13.39408 -13.22691 -13.11205 -12.56247 -12.31525 -12.30337 -11.95460 -11.90011 -11.79503 -11.72185 -11.56864 -10.89233 -10.76302 -10.63297 -10.10313 -9.90177 -9.81594 -9.69755 -9.55292 -9.39319 -9.14931 -9.06444 -8.99375 -8.37589 -6.02525 -4.05655 0.17532 0.82694 1.24457 1.38910 2.17287 2.36689 3.19954 3.32743 3.37301 3.39276 3.43294 3.73360 4.28629 4.35497 4.42920 4.44491 4.50165 4.52314 4.54916 4.86516 4.94683 4.94969 5.13343 5.28011 5.29186 5.32103 5.33440 5.40530 5.48956 5.58589 5.68635 5.81658 5.87634 6.07516 6.25573 6.53662 6.67354 6.85787 6.94855 7.27742 7.36902 7.61386 7.68007 7.73225 7.95574 8.02739 8.36907 9.00587 9.58738 11.08679 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.035200 B = 0.001355 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.266225 B =20663.302688 C =20862.661500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.060 3.940 3 N -0.461 5.461 4 C 0.049 3.951 5 C -0.056 4.056 6 C 0.126 3.874 7 N -0.704 5.704 8 C 0.510 3.490 9 O -0.518 6.518 10 C 0.501 3.499 11 O -0.526 6.526 12 N -0.691 5.691 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 S 0.128 5.872 25 C -0.227 4.227 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.951 -27.021 -16.116 37.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 N -0.176 5.176 4 C -0.229 4.229 5 C -0.097 4.097 6 C 0.001 3.999 7 N -0.359 5.359 8 C 0.291 3.709 9 O -0.393 6.393 10 C 0.281 3.719 11 O -0.403 6.403 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 S 0.384 5.616 25 C -0.348 4.348 26 C -0.134 4.134 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.069 -26.867 -16.135 37.215 hybrid contribution -0.572 0.375 0.908 1.136 sum -20.641 -26.492 -15.227 36.875 Atomic orbital electron populations 1.20379 0.87001 1.03470 1.02959 1.20185 0.98251 0.86090 1.02601 1.66113 1.04405 1.31754 1.15290 1.26458 0.93944 0.97821 1.04726 1.20408 0.96541 0.95074 0.97698 1.21364 0.93455 0.89470 0.95647 1.45643 1.45660 1.35273 1.09327 1.20347 0.82318 0.84060 0.84188 1.90775 1.56848 1.60609 1.31020 1.19946 0.82745 0.84079 0.85163 1.90763 1.57515 1.61013 1.31002 1.46074 1.44773 1.35138 1.08245 1.21857 0.91306 0.87195 1.00492 1.21934 1.01195 1.01085 0.91897 1.19028 0.93234 0.91588 0.97448 1.21166 1.26024 1.16761 0.92285 0.92620 1.25014 0.95972 0.96265 0.97106 1.69953 1.29993 1.22597 1.30748 0.86635 0.78193 0.78049 0.84985 1.20231 1.21266 1.20224 1.84048 1.06721 1.02528 1.68335 1.25759 0.95134 1.01145 1.12736 1.20266 1.01296 0.88896 1.02985 0.90599 0.90625 0.90471 0.88483 0.87570 0.90089 0.90557 0.74868 0.75280 0.91047 0.91037 0.92413 0.92412 0.96192 0.96183 0.92865 0.90437 0.91006 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.06 36.01 0.36 -0.07 16 2 C 0.06 0.49 6.74 -84.22 -0.57 -0.08 16 3 N -0.46 -4.44 10.53 -8.06 -0.08 -4.53 16 4 C 0.05 0.39 6.64 -13.45 -0.09 0.30 16 5 C -0.06 -0.34 5.91 -27.88 -0.16 -0.51 16 6 C 0.13 1.02 5.66 -4.04 -0.02 1.00 16 7 N -0.70 -6.68 5.55 -60.73 -0.34 -7.02 16 8 C 0.51 6.55 7.89 -11.59 -0.09 6.46 16 9 O -0.52 -7.73 16.48 5.50 0.09 -7.64 16 10 C 0.50 7.33 7.89 -11.59 -0.09 7.24 16 11 O -0.53 -8.68 16.48 5.50 0.09 -8.59 16 12 N -0.69 -10.26 5.55 -60.73 -0.34 -10.59 16 13 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 S 0.13 0.86 23.18 -107.50 -2.49 -1.63 16 25 C -0.23 -1.55 6.59 -35.92 -0.24 -1.78 16 26 C -0.08 -0.29 10.10 36.01 0.36 0.08 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.27 6.71 -51.92 -0.35 -0.08 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.63 8.14 -51.94 -0.42 0.21 16 34 H 0.41 3.29 7.94 -40.82 -0.32 2.97 16 35 H 0.41 5.59 7.95 -40.82 -0.32 5.27 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.08 0.22 6.75 -51.93 -0.35 -0.13 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -33.91 399.26 -9.40 -43.31 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.81 Total: 0.95 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.25 Total: -0.85 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.02 Total: -48.02 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.18 Total: -16.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.91 -9.40 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286770721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.956 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds