Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20921 * 111.60526 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46897 * 111.00075 * 294.30299 * 9 8 7 11 11 C 1.53241 * 109.33917 * 172.74655 * 10 9 8 12 12 N 1.47077 * 108.52322 * 53.82658 * 11 10 9 13 13 C 1.34781 * 120.87859 * 128.79077 * 12 11 10 14 14 O 1.21277 * 119.99792 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99973 * 0.02562 * 13 12 11 16 16 S 1.81000 * 109.46815 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99962 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99706 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00292 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99568 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47193 * 59.99929 * 21 19 17 23 23 H 1.48498 * 109.47564 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47348 * 299.99803 * 21 19 17 25 25 C 1.47077 * 118.23856 * 308.81948 * 12 11 10 26 26 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 27 27 H 1.09001 * 109.47529 * 270.02212 * 1 2 3 28 28 H 1.08998 * 109.47446 * 30.02442 * 1 2 3 29 29 H 1.09005 * 109.47218 * 150.02308 * 1 2 3 30 30 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 31 31 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 32 32 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 33 33 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 34 34 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 35 35 H 1.08994 * 109.49273 * 292.70632 * 10 9 8 36 36 H 1.08999 * 109.49594 * 52.78809 * 10 9 8 37 37 H 1.09008 * 109.62553 * 294.11947 * 11 10 9 38 38 H 1.09001 * 109.78809 * 173.64016 * 11 10 9 39 39 H 1.08994 * 109.47550 * 300.00009 * 15 13 12 40 40 H 1.09005 * 109.46725 * 60.00420 * 15 13 12 41 41 H 0.97007 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.62754 * 291.46722 * 25 12 11 43 43 H 1.09003 * 109.62726 * 170.89503 * 25 12 11 44 44 H 1.08993 * 109.49516 * 307.21612 * 26 9 8 45 45 H 1.09000 * 109.48780 * 67.29232 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3694 0.0141 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0014 9 7 1.8305 -3.0597 -1.3833 10 6 0.7175 -2.3884 -2.0679 11 6 0.7293 -2.7715 -3.5516 12 7 0.7292 -4.2386 -3.6554 13 6 -0.1666 -4.8769 -4.4344 14 8 -0.1526 -6.0873 -4.5078 15 6 -1.1855 -4.0864 -5.2141 16 16 -2.2364 -5.2198 -6.1559 17 6 -3.3018 -4.0618 -6.9488 18 1 -3.1763 -3.0037 -6.7721 19 6 -4.3022 -4.5093 -7.8004 20 7 -4.4548 -5.7989 -8.0161 21 14 -5.4322 -3.2817 -8.6404 22 1 -4.6258 -2.3642 -9.4851 23 1 -6.4076 -4.0088 -9.4920 24 1 -6.1610 -2.4960 -7.6126 25 6 1.7320 -4.9908 -2.8861 26 6 1.6807 -4.5203 -1.4286 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 5.2208 -1.5553 -1.0115 31 1 5.6633 -0.7848 0.5308 32 1 4.7624 -2.3200 0.5291 33 1 1.0051 -2.7035 0.5155 34 1 2.7229 -3.1699 0.5154 35 1 -0.2259 -2.6994 -1.6195 36 1 0.8287 -1.3085 -1.9703 37 1 1.6253 -2.3710 -4.0261 38 1 -0.1563 -2.3694 -4.0436 39 1 -1.8008 -3.5074 -4.5255 40 1 -0.6740 -3.4110 -5.9000 41 1 -5.1538 -6.1116 -8.6116 42 1 2.7242 -4.8037 -3.2966 43 1 1.5074 -6.0563 -2.9351 44 1 2.4903 -4.9866 -0.8673 45 1 0.7238 -4.8016 -0.9890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298923880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = 35.774242 kcal Electronic energy + Delta-G solvation = -27182.942162 eV Core-core repulsion = 23330.336535 eV Total energy + Delta-G solvation = -3852.605627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.20976 -40.06520 -38.19736 -35.75451 -34.31316 -33.59328 -32.44100 -31.64700 -29.88925 -28.97369 -28.71260 -27.37442 -25.53471 -25.02386 -23.88151 -21.91611 -21.22970 -20.36617 -19.03342 -18.00845 -17.71306 -17.28096 -16.79206 -15.80473 -15.54161 -15.45869 -15.22631 -15.14983 -14.81499 -14.45090 -14.10564 -13.99516 -13.80500 -13.59411 -13.44088 -13.23337 -13.07283 -12.90251 -12.66234 -12.57503 -12.35834 -12.16905 -11.86194 -11.53363 -11.49593 -11.33851 -11.12637 -11.05046 -11.04900 -10.77288 -10.17837 -9.82797 -9.49253 -9.38657 -9.07244 -8.88954 -8.42606 -8.24898 -6.51868 -6.22762 -3.93699 1.16666 1.84573 2.80605 2.89043 3.02227 3.22520 3.24394 3.28069 3.54348 3.64656 3.84779 4.11448 4.19090 4.43181 4.54306 4.58609 4.73984 4.85896 4.90662 4.96556 5.02575 5.05575 5.09799 5.12301 5.13640 5.19459 5.23028 5.30381 5.32278 5.40443 5.45130 5.48496 5.53491 5.63330 5.68780 5.76244 5.83254 5.84239 5.91222 6.08912 6.52091 6.61736 6.68039 7.53763 7.58080 8.00669 8.33628 8.52977 9.22379 10.84588 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.002469 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.100632 B =11338.517022 C =12565.813850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.025 3.975 3 N -0.367 5.367 4 O 0.094 5.906 5 C -0.011 4.011 6 C -0.071 4.071 7 C -0.197 4.197 8 C 0.134 3.866 9 N -0.532 5.532 10 C 0.036 3.964 11 C 0.114 3.886 12 N -0.622 5.622 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.119 3.881 26 C 0.042 3.958 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.527 9.566 19.634 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 N -0.073 5.073 4 O 0.030 5.970 5 C -0.076 4.076 6 C -0.128 4.128 7 C -0.202 4.202 8 C 0.007 3.993 9 N -0.257 5.257 10 C -0.092 4.092 11 C -0.010 4.010 12 N -0.359 5.359 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.004 4.004 26 C -0.086 4.086 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.648 9.040 19.166 27.577 hybrid contribution -1.581 1.402 -0.002 2.113 sum 16.066 10.442 19.164 27.100 Atomic orbital electron populations 1.20356 0.86105 1.04262 1.03572 1.23450 0.98821 0.88572 1.02547 1.73864 0.89253 1.23865 1.20335 1.84809 1.21659 1.22608 1.67896 1.24259 0.98265 0.83631 1.01416 1.20328 0.89768 0.98294 1.04432 1.20722 0.91706 0.96843 1.10895 1.20223 1.00804 0.88658 0.89660 1.61949 1.43797 1.05463 1.14496 1.22686 0.92068 0.99720 0.94746 1.21780 1.03375 0.80387 0.95413 1.48161 1.33639 1.06749 1.47340 1.20336 0.80640 0.88145 0.78520 1.90689 1.71292 1.13952 1.63188 1.23550 1.00155 1.04230 1.02195 1.85400 1.34903 1.08713 1.54353 1.22813 1.18954 0.94329 1.32284 0.91007 1.24989 0.96869 0.95808 0.95886 1.70013 1.32131 1.12954 1.35182 0.86229 0.79753 0.80359 0.79191 1.19916 1.20796 1.19943 1.21587 0.91960 0.97652 0.89199 1.22522 1.01170 0.87144 0.97749 0.90144 0.90189 0.89777 0.88979 0.90118 0.89151 0.93286 0.89291 0.93886 0.89378 0.90825 0.88896 0.89393 0.89250 0.92118 0.91077 0.88477 0.89465 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.90 36.00 0.36 -0.30 16 2 C 0.03 0.25 6.39 -82.10 -0.52 -0.28 16 3 N -0.37 -4.21 12.07 33.42 0.40 -3.81 16 4 O 0.09 0.97 11.20 17.18 0.19 1.16 16 5 C -0.01 -0.09 7.49 -35.30 -0.26 -0.36 16 6 C -0.07 -0.31 10.30 36.00 0.37 0.07 16 7 C -0.20 -1.67 5.11 -104.42 -0.53 -2.20 16 8 C 0.13 0.96 5.29 -4.98 -0.03 0.94 16 9 N -0.53 -4.57 4.62 -235.77 -1.09 -5.66 16 10 C 0.04 0.35 4.28 -3.70 -0.02 0.33 16 11 C 0.11 1.29 6.50 -3.60 -0.02 1.27 16 12 N -0.62 -8.73 3.01 -172.46 -0.52 -9.25 16 13 C 0.54 10.10 7.73 -10.98 -0.08 10.01 16 14 O -0.52 -11.67 15.31 5.56 0.09 -11.59 16 15 C -0.15 -3.05 4.52 36.01 0.16 -2.88 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.12 1.37 6.60 -3.61 -0.02 1.35 16 26 C 0.04 0.37 5.62 -3.70 -0.02 0.35 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.60 5.58 -51.93 -0.29 0.31 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.27 7.44 -51.93 -0.39 -0.11 16 33 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.09 0.48 7.27 -51.93 -0.38 0.11 16 35 H 0.04 0.43 7.73 -51.93 -0.40 0.03 16 36 H 0.09 0.82 5.01 -51.93 -0.26 0.56 16 37 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.09 1.05 6.02 -51.93 -0.31 0.74 16 39 H 0.09 1.64 7.66 -51.92 -0.40 1.24 16 40 H 0.09 1.69 8.00 -51.91 -0.42 1.27 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 44 H 0.09 0.56 7.99 -51.93 -0.41 0.15 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -35.31 376.58 -8.73 -44.04 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.55 Total: -3.08 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.43 Total: -4.58 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.47 Total: -44.09 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.28 Total: -10.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.31 -8.73 -44.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298923880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.814 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds