Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30180 * 126.80260 * 2 1 4 4 O 1.20921 * 111.60526 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 N 1.46899 * 109.47107 * 269.67438 * 8 7 5 10 10 C 1.46897 * 111.00075 * 294.30299 * 9 8 7 11 11 C 1.53241 * 109.33917 * 172.74655 * 10 9 8 12 12 N 1.47077 * 108.52322 * 53.82658 * 11 10 9 13 13 C 1.34781 * 120.87859 * 128.79077 * 12 11 10 14 14 O 1.21277 * 119.99792 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99973 * 0.02562 * 13 12 11 16 16 S 1.81000 * 109.46815 * 179.97438 * 15 13 12 17 17 C 1.76206 * 99.99962 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99706 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00292 * 180.02562 * 17 16 15 20 20 N 1.31636 * 119.99568 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00301 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47193 * 59.99929 * 21 19 17 23 23 H 1.48498 * 109.47564 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47348 * 299.99803 * 21 19 17 25 25 C 1.47077 * 118.23856 * 308.81948 * 12 11 10 26 26 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 27 27 H 1.09001 * 109.47529 * 270.02212 * 1 2 3 28 28 H 1.08998 * 109.47446 * 30.02442 * 1 2 3 29 29 H 1.09005 * 109.47218 * 150.02308 * 1 2 3 30 30 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 31 31 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 32 32 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 33 33 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 34 34 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 35 35 H 1.08994 * 109.49273 * 292.70632 * 10 9 8 36 36 H 1.08999 * 109.49594 * 52.78809 * 10 9 8 37 37 H 1.09008 * 109.62553 * 294.11947 * 11 10 9 38 38 H 1.09001 * 109.78809 * 173.64016 * 11 10 9 39 39 H 1.08994 * 109.47550 * 300.00009 * 15 13 12 40 40 H 1.09005 * 109.46725 * 60.00420 * 15 13 12 41 41 H 0.97007 * 119.99697 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.62754 * 291.46722 * 25 12 11 43 43 H 1.09003 * 109.62726 * 170.89503 * 25 12 11 44 44 H 1.08993 * 109.49516 * 307.21612 * 26 9 8 45 45 H 1.09000 * 109.48780 * 67.29232 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3694 0.0141 7 6 2.3539 -1.1320 0.0005 8 6 1.9591 -2.5864 0.0014 9 7 1.8305 -3.0597 -1.3833 10 6 0.7175 -2.3884 -2.0679 11 6 0.7293 -2.7715 -3.5516 12 7 0.7292 -4.2386 -3.6554 13 6 -0.1666 -4.8769 -4.4344 14 8 -0.1526 -6.0873 -4.5078 15 6 -1.1855 -4.0864 -5.2141 16 16 -2.2364 -5.2198 -6.1559 17 6 -3.3018 -4.0618 -6.9488 18 1 -3.1763 -3.0037 -6.7721 19 6 -4.3022 -4.5093 -7.8004 20 7 -4.4548 -5.7989 -8.0161 21 14 -5.4322 -3.2817 -8.6404 22 1 -4.6258 -2.3642 -9.4851 23 1 -6.4076 -4.0088 -9.4920 24 1 -6.1610 -2.4960 -7.6126 25 6 1.7320 -4.9908 -2.8861 26 6 1.6807 -4.5203 -1.4286 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 5.2208 -1.5553 -1.0115 31 1 5.6633 -0.7848 0.5308 32 1 4.7624 -2.3200 0.5291 33 1 1.0051 -2.7035 0.5155 34 1 2.7229 -3.1699 0.5154 35 1 -0.2259 -2.6994 -1.6195 36 1 0.8287 -1.3085 -1.9703 37 1 1.6253 -2.3710 -4.0261 38 1 -0.1563 -2.3694 -4.0436 39 1 -1.8008 -3.5074 -4.5255 40 1 -0.6740 -3.4110 -5.9000 41 1 -5.1538 -6.1116 -8.6116 42 1 2.7242 -4.8037 -3.2966 43 1 1.5074 -6.0563 -2.9351 44 1 2.4903 -4.9866 -0.8673 45 1 0.7238 -4.8016 -0.9890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298923880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = 11.603691 kcal Electronic energy + Delta-G solvation = -27183.990276 eV Core-core repulsion = 23330.336535 eV Total energy + Delta-G solvation = -3853.653741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -45.89250 -41.21446 -39.26530 -36.66508 -35.13040 -34.59204 -34.27491 -32.59436 -31.01212 -29.85286 -29.43667 -28.09748 -27.64154 -25.86504 -24.75976 -22.78851 -22.06057 -20.99811 -20.34362 -19.50606 -18.70757 -18.23857 -17.87661 -17.03366 -16.88110 -16.74291 -16.25806 -16.16957 -15.88100 -15.71034 -15.19818 -14.84778 -14.62530 -14.50985 -14.47834 -14.29525 -13.83924 -13.76898 -13.55724 -13.41495 -13.27540 -13.18122 -12.92972 -12.87423 -12.84215 -12.64019 -12.41536 -12.30173 -12.12277 -11.79975 -11.72579 -11.13709 -10.90210 -10.85293 -10.28570 -10.10916 -9.87398 -9.30871 -8.68336 -8.35253 -6.13767 0.54709 1.17816 1.24422 1.43175 1.44706 1.54501 1.54845 2.06371 2.26065 2.26674 2.91400 2.98787 3.22564 3.23646 3.54517 3.62690 3.84135 3.90052 3.90450 4.04273 4.17507 4.22826 4.26360 4.34879 4.40311 4.42455 4.52620 4.57607 4.60543 4.65452 4.69825 4.77078 4.78459 4.82155 4.83068 4.86390 4.99943 5.05188 5.16517 5.33695 5.40611 5.48228 5.90470 5.94878 6.18727 6.27143 7.05844 7.11141 7.35319 8.73723 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.002469 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.100632 B =11338.517022 C =12565.813850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.018 3.982 3 N -0.402 5.402 4 O 0.077 5.923 5 C -0.006 4.006 6 C -0.071 4.071 7 C -0.207 4.207 8 C 0.138 3.862 9 N -0.531 5.531 10 C 0.043 3.957 11 C 0.109 3.891 12 N -0.609 5.609 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.125 4.125 16 S -0.149 6.149 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.114 3.886 26 C 0.052 3.948 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.271 0.729 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.667 11.134 20.856 30.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 N -0.112 5.112 4 O 0.016 5.984 5 C -0.071 4.071 6 C -0.128 4.128 7 C -0.212 4.212 8 C 0.011 3.989 9 N -0.256 5.256 10 C -0.085 4.085 11 C -0.014 4.014 12 N -0.343 5.343 13 C 0.322 3.678 14 O -0.443 6.443 15 C -0.276 4.276 16 S 0.078 5.922 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.008 4.008 26 C -0.076 4.076 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.132 0.868 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.843 10.649 20.429 29.762 hybrid contribution -1.782 0.951 -0.279 2.039 sum 17.062 11.600 20.149 28.838 Atomic orbital electron populations 1.20412 0.85163 1.04366 1.04301 1.23854 0.99651 0.88873 1.01770 1.73859 0.89902 1.25117 1.22280 1.84768 1.21341 1.23947 1.68318 1.24953 0.99660 0.82878 0.99561 1.20536 0.88266 0.98755 1.05206 1.20882 0.91622 0.97131 1.11562 1.20286 1.01785 0.88089 0.88708 1.61940 1.43000 1.05132 1.15568 1.22580 0.92460 1.00084 0.93412 1.22009 1.03949 0.78337 0.97099 1.48157 1.32388 1.08126 1.45649 1.20086 0.81232 0.87414 0.79085 1.90672 1.72769 1.15702 1.65108 1.23368 0.99595 1.02656 1.01966 1.85564 1.37284 1.13006 1.56350 1.23151 1.19170 0.94646 1.32434 0.89978 1.26119 0.98575 0.97897 0.96491 1.70180 1.33073 1.15347 1.36117 0.85019 0.77352 0.77592 0.78137 1.18698 1.20365 1.18615 1.21807 0.91580 0.96556 0.90853 1.22459 1.02035 0.87401 0.95685 0.89105 0.90478 0.89193 0.88394 0.88858 0.87232 0.93060 0.86799 0.94246 0.88847 0.89631 0.89000 0.87621 0.87692 0.91968 0.89503 0.90301 0.86191 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.90 71.23 0.71 -0.49 16 2 C 0.02 0.32 6.39 43.57 0.28 0.60 16 3 N -0.40 -8.99 12.07 -49.55 -0.60 -9.59 16 4 O 0.08 1.52 11.20 71.66 0.80 2.32 16 5 C -0.01 -0.09 7.49 25.04 0.19 0.10 16 6 C -0.07 -0.38 10.30 71.24 0.73 0.36 16 7 C -0.21 -3.01 5.11 -19.73 -0.10 -3.11 16 8 C 0.14 1.51 5.29 85.56 0.45 1.96 16 9 N -0.53 -7.42 4.62 -899.84 -4.16 -11.57 16 10 C 0.04 0.72 4.28 86.38 0.37 1.09 16 11 C 0.11 2.22 6.50 86.35 0.56 2.78 16 12 N -0.61 -16.27 3.01 -817.93 -2.46 -18.74 16 13 C 0.53 20.14 7.73 87.66 0.68 20.81 16 14 O -0.56 -26.20 15.31 -3.02 -0.05 -26.24 16 15 C -0.12 -5.02 4.52 71.24 0.32 -4.70 16 16 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 17 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 19 C 0.01 0.80 5.49 84.85 0.47 1.26 16 20 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 21 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 C 0.11 2.43 6.60 86.35 0.57 3.00 16 26 C 0.05 0.76 5.62 86.38 0.49 1.25 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.12 5.58 -2.38 -0.01 1.11 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.11 0.19 7.44 -2.39 -0.02 0.17 16 33 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 34 H 0.11 0.71 7.27 -2.39 -0.02 0.69 16 35 H 0.04 0.70 7.73 -2.39 -0.02 0.69 16 36 H 0.09 1.52 5.01 -2.39 -0.01 1.51 16 37 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.09 1.90 6.02 -2.39 -0.01 1.89 16 39 H 0.11 3.85 7.66 -2.40 -0.02 3.83 16 40 H 0.10 3.87 8.00 -2.39 -0.02 3.85 16 41 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 2.02 7.06 -2.39 -0.02 2.00 16 44 H 0.12 1.03 7.99 -2.39 -0.02 1.01 16 45 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -79.59 376.58 2.05 -77.54 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.01 Total: 11.52 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 6.35 Total: -5.61 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -6.93 Total: -95.57 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.76 Total: -23.92 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -79.59 2.05 -77.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298923880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.140 kcal (2) G-P(sol) polarization free energy of solvation -79.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds