Wall clock time and date at job start Sat Apr 11 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46501 * 109.64442 * 2 1 4 4 C 1.34956 * 126.03504 * 44.57207 * 3 2 1 5 5 C 1.35320 * 107.74263 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.03543 * 179.73512 * 5 4 3 7 7 N 1.46496 * 109.46951 * 90.00037 * 6 5 4 8 8 C 1.36935 * 120.00066 * 89.99948 * 7 6 5 9 9 H 1.08007 * 120.00224 * 218.07810 * 8 7 6 10 10 C 1.38810 * 120.00159 * 38.07393 * 8 7 6 11 11 N 1.31627 * 119.99801 * 20.54060 * 10 8 7 12 12 Si 1.86799 * 120.00470 * 200.54579 * 10 8 7 13 13 H 1.48500 * 109.47335 * 59.99656 * 12 10 8 14 14 H 1.48497 * 109.47101 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46744 * 299.99661 * 12 10 8 16 16 C 1.46503 * 120.00235 * 270.00085 * 7 6 5 17 17 C 1.53002 * 117.49942 * 193.92632 * 16 7 6 18 18 C 1.53004 * 117.50004 * 125.26622 * 16 7 6 19 19 C 1.39864 * 107.92098 * 359.97438 * 5 4 3 20 20 N 1.30841 * 108.20618 * 0.02562 * 19 5 4 21 21 C 1.53883 * 109.64829 * 239.57318 * 2 1 3 22 22 C 1.55047 * 106.62460 * 193.09757 * 21 2 1 23 23 S 1.83293 * 102.56537 * 42.43312 * 22 21 2 24 24 O 1.42102 * 109.35416 * 90.18408 * 23 22 21 25 25 O 1.42107 * 109.35243 * 223.25283 * 23 22 21 26 26 C 1.54169 * 109.53941 * 120.36155 * 2 1 3 27 27 H 1.09006 * 109.47154 * 60.69655 * 1 2 3 28 28 H 1.08995 * 109.47455 * 180.70066 * 1 2 3 29 29 H 1.09001 * 109.47267 * 300.70321 * 1 2 3 30 30 H 1.07991 * 126.12553 * 0.04111 * 4 3 2 31 31 H 1.08993 * 109.47051 * 210.00253 * 6 5 4 32 32 H 1.09003 * 109.46867 * 330.00353 * 6 5 4 33 33 H 0.96994 * 119.99941 * 174.96675 * 11 10 8 34 34 H 1.09003 * 115.55010 * 339.59457 * 16 7 6 35 35 H 1.08998 * 117.49909 * 0.02562 * 17 16 7 36 36 H 1.09000 * 117.49449 * 145.01655 * 17 16 7 37 37 H 1.08998 * 117.49807 * 214.97789 * 18 16 7 38 38 H 1.08996 * 117.49997 * 359.97438 * 18 16 7 39 39 H 1.08002 * 125.89542 * 179.97438 * 19 5 4 40 40 H 1.09003 * 110.02301 * 312.38578 * 21 2 1 41 41 H 1.08994 * 110.02493 * 73.80762 * 21 2 1 42 42 H 1.09000 * 110.78776 * 160.69706 * 22 21 2 43 43 H 1.08995 * 110.79060 * 284.16902 * 22 21 2 44 44 H 1.08994 * 110.32023 * 266.59873 * 26 2 1 45 45 H 1.09002 * 110.31598 * 28.79663 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0224 1.3797 0.0000 4 6 1.5571 2.3888 0.7659 5 6 2.2736 3.4973 0.4674 6 6 2.0917 4.8621 1.0800 7 7 2.9427 4.9822 2.2664 8 6 4.2211 5.4582 2.1467 9 1 5.0146 5.0305 2.7416 10 6 4.4972 6.4905 1.2607 11 7 3.5276 7.2770 0.8438 12 14 6.2448 6.7637 0.6601 13 1 6.7212 5.5475 -0.0464 14 1 6.2732 7.9205 -0.2705 15 1 7.1293 7.0406 1.8204 16 6 2.4262 4.5929 3.5809 17 6 3.2200 5.0363 4.8115 18 6 3.2316 3.5673 4.3811 19 6 3.2091 3.1537 -0.5140 20 7 3.0593 1.8847 -0.7951 21 6 2.0473 -0.7339 -1.2496 22 6 3.5592 -0.9894 -1.0198 23 16 3.6116 -1.5232 0.7329 24 8 3.4722 -2.9358 0.7993 25 8 4.7021 -0.8881 1.3862 26 6 2.0455 -0.7344 1.2536 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 0.7566 2.3233 1.4878 31 1 2.3702 5.6261 0.3543 32 1 1.0485 4.9958 1.3662 33 1 3.7308 8.0420 0.2832 34 1 1.3402 4.5588 3.6680 35 1 4.1263 5.6179 4.6431 36 1 2.6561 5.2935 5.7082 37 1 2.6756 2.8587 4.9949 38 1 4.1456 3.1819 3.9294 39 1 3.9300 3.8210 -0.9629 40 1 1.5226 -1.6818 -1.3698 41 1 1.9039 -0.1126 -2.1336 42 1 3.9220 -1.7805 -1.6761 43 1 4.1324 -0.0734 -1.1625 44 1 2.2293 -0.0240 2.0596 45 1 1.3279 -1.4910 1.5710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352732236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:16 Heat of formation + Delta-G solvation = 72.272654 kcal Electronic energy + Delta-G solvation = -28795.282175 eV Core-core repulsion = 24944.259238 eV Total energy + Delta-G solvation = -3851.022937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.97473 -37.68389 -37.12597 -36.80858 -36.09302 -33.54655 -31.89298 -31.23181 -29.67848 -29.04945 -28.26761 -25.50062 -24.38599 -23.38177 -22.03621 -21.32069 -19.95267 -19.63683 -19.29310 -18.96509 -17.51632 -16.70888 -16.28614 -15.90852 -15.51306 -15.30019 -15.05280 -14.47731 -14.36689 -14.04229 -13.83751 -13.71287 -13.45688 -13.05582 -12.82270 -12.65905 -12.48935 -12.26500 -12.24899 -12.17991 -12.10760 -11.83867 -11.74129 -11.53514 -11.06735 -10.87783 -10.82710 -10.78332 -10.55546 -10.47454 -10.22391 -10.11666 -9.88270 -9.52884 -9.27989 -8.91891 -8.42864 -7.77764 -6.44831 -5.82543 -3.36758 -0.11244 2.23864 2.38728 2.62062 3.36265 3.38588 3.42428 3.46142 3.51038 3.86723 3.97952 4.02533 4.22368 4.46078 4.55627 4.63447 4.97485 4.99741 5.11303 5.14612 5.17277 5.34191 5.37337 5.39003 5.40433 5.46746 5.66903 5.73399 5.79417 5.92528 6.11484 6.20412 6.24992 6.31299 6.51956 6.64033 6.71834 6.95758 7.05464 7.22196 7.27626 7.43765 7.65744 7.84556 8.21603 8.53723 9.17760 9.79371 10.36794 11.19105 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.003988 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.685979 B = 7018.930013 C = 7190.851870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.207 3.793 3 N -0.389 5.389 4 C 0.041 3.959 5 C -0.202 4.202 6 C 0.211 3.789 7 N -0.542 5.542 8 C -0.253 4.253 9 H 0.059 0.941 10 C 0.019 3.981 11 N -0.889 5.889 12 Si 0.894 3.106 13 H -0.280 1.280 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.131 3.869 17 C -0.196 4.196 18 C -0.229 4.229 19 C 0.078 3.922 20 N -0.318 5.318 21 C -0.108 4.108 22 C -0.581 4.581 23 S 2.381 3.619 24 O -0.943 6.943 25 O -0.926 6.926 26 C -0.612 4.612 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.106 0.894 32 H 0.032 0.968 33 H 0.257 0.743 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.178 0.822 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -15.188 -3.706 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.121 3.879 3 N -0.175 5.175 4 C -0.102 4.102 5 C -0.215 4.215 6 C 0.085 3.915 7 N -0.257 5.257 8 C -0.383 4.383 9 H 0.076 0.924 10 C -0.182 4.182 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.216 1.216 15 H -0.207 1.207 16 C 0.021 3.979 17 C -0.235 4.235 18 C -0.270 4.270 19 C -0.108 4.108 20 N -0.138 5.138 21 C -0.147 4.147 22 C -0.711 4.711 23 S 2.565 3.435 24 O -0.940 6.940 25 O -0.924 6.924 26 C -0.742 4.742 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.195 0.805 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.167 0.833 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.741 -16.662 -4.081 18.820 hybrid contribution 0.212 1.311 0.100 1.331 sum -7.529 -15.351 -3.981 17.555 Atomic orbital electron populations 1.22176 0.90998 1.03744 1.04208 1.20616 0.95916 0.79394 0.92021 1.48498 1.29069 1.06900 1.33004 1.22104 1.01744 0.87921 0.98471 1.21550 0.99102 0.99519 1.01346 1.19407 0.92046 0.89845 0.90240 1.43363 1.12450 1.71199 0.98669 1.18851 0.84437 1.12638 1.22397 0.92369 1.25147 0.96913 0.95196 1.00916 1.69873 1.31084 1.14478 1.37662 0.86499 0.84892 0.77417 0.78827 1.20601 1.21571 1.20743 1.21079 0.92955 0.98928 0.84908 1.23067 1.04559 0.97170 0.98731 1.23361 1.04750 0.91994 1.06874 1.23822 0.98319 0.92050 0.96629 1.77054 1.06814 1.12087 1.17840 1.22310 0.91849 1.01804 0.98705 1.30680 1.04230 1.13902 1.22299 1.09257 0.78019 0.75975 0.80253 1.93602 1.86771 1.27367 1.86293 1.93661 1.48878 1.77169 1.72647 1.31180 1.22497 1.13246 1.07241 0.90697 0.90025 0.90763 0.82244 0.87685 0.94969 0.93260 0.89718 0.88342 0.90986 0.91313 0.89750 0.80495 0.88310 0.87166 0.84544 0.82328 0.83318 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.17 37.15 0.30 -0.79 16 2 C 0.21 2.04 0.95 -130.75 -0.12 1.92 16 3 N -0.39 -5.48 3.40 -47.66 -0.16 -5.64 16 4 C 0.04 0.63 10.35 -17.22 -0.18 0.46 16 5 C -0.20 -3.82 5.68 -105.05 -0.60 -4.41 16 6 C 0.21 4.56 5.81 -5.19 -0.03 4.53 16 7 N -0.54 -12.69 2.76 -167.02 -0.46 -13.15 16 8 C -0.25 -6.60 8.04 -15.06 -0.12 -6.72 16 9 H 0.06 1.58 7.23 -52.48 -0.38 1.20 16 10 C 0.02 0.49 4.97 -17.43 -0.09 0.40 16 11 N -0.89 -24.05 11.45 55.49 0.64 -23.41 16 12 Si 0.89 21.01 29.60 -169.99 -5.03 15.98 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.13 2.71 6.61 -67.93 -0.45 2.27 16 17 C -0.20 -3.93 9.81 -26.69 -0.26 -4.20 16 18 C -0.23 -4.45 10.09 -26.69 -0.27 -4.72 16 19 C 0.08 1.48 11.96 -17.37 -0.21 1.27 16 20 N -0.32 -5.31 9.80 30.62 0.30 -5.01 16 21 C -0.11 -0.91 5.01 -25.19 -0.13 -1.04 16 22 C -0.58 -5.80 6.95 38.24 0.27 -5.54 16 23 S 2.38 28.53 6.10 -107.50 -0.66 27.87 16 24 O -0.94 -12.86 18.15 -57.73 -1.05 -13.91 16 25 O -0.93 -15.87 18.15 -57.73 -1.05 -16.92 16 26 C -0.61 -5.82 6.40 37.77 0.24 -5.58 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 30 H 0.16 2.07 7.54 -52.49 -0.40 1.67 16 31 H 0.11 2.57 5.52 -51.93 -0.29 2.28 16 32 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 34 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 35 H 0.10 2.20 6.95 -51.93 -0.36 1.84 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.83 8.01 -51.93 -0.42 1.42 16 39 H 0.18 3.38 8.06 -52.49 -0.42 2.96 16 40 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 41 H 0.11 0.99 8.07 -51.93 -0.42 0.58 16 42 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.16 1.96 6.42 -51.93 -0.33 1.62 16 44 H 0.15 1.60 7.87 -51.93 -0.41 1.19 16 45 H 0.15 0.90 7.87 -51.93 -0.41 0.50 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -33.77 375.69 -10.17 -43.94 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.72 Total: 6.73 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -1.64 Total: -22.15 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.31 Total: -47.21 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -2.10 Total: -30.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 28.53 SS G_CDS: -0.66 Total: 27.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.77 -10.17 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352732236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.213 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds