Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46501 * 109.64442 * 2 1 4 4 C 1.34956 * 126.03504 * 44.57207 * 3 2 1 5 5 C 1.35320 * 107.74263 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.03543 * 179.73512 * 5 4 3 7 7 N 1.46496 * 109.46951 * 90.00037 * 6 5 4 8 8 C 1.36935 * 120.00066 * 89.99948 * 7 6 5 9 9 H 1.08007 * 120.00224 * 218.07810 * 8 7 6 10 10 C 1.38810 * 120.00159 * 38.07393 * 8 7 6 11 11 N 1.31627 * 119.99801 * 20.54060 * 10 8 7 12 12 Si 1.86799 * 120.00470 * 200.54579 * 10 8 7 13 13 H 1.48500 * 109.47335 * 59.99656 * 12 10 8 14 14 H 1.48497 * 109.47101 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46744 * 299.99661 * 12 10 8 16 16 C 1.46503 * 120.00235 * 270.00085 * 7 6 5 17 17 C 1.53002 * 117.49942 * 193.92632 * 16 7 6 18 18 C 1.53004 * 117.50004 * 125.26622 * 16 7 6 19 19 C 1.39864 * 107.92098 * 359.97438 * 5 4 3 20 20 N 1.30841 * 108.20618 * 0.02562 * 19 5 4 21 21 C 1.53883 * 109.64829 * 239.57318 * 2 1 3 22 22 C 1.55047 * 106.62460 * 193.09757 * 21 2 1 23 23 S 1.83293 * 102.56537 * 42.43312 * 22 21 2 24 24 O 1.42102 * 109.35416 * 90.18408 * 23 22 21 25 25 O 1.42107 * 109.35243 * 223.25283 * 23 22 21 26 26 C 1.54169 * 109.53941 * 120.36155 * 2 1 3 27 27 H 1.09006 * 109.47154 * 60.69655 * 1 2 3 28 28 H 1.08995 * 109.47455 * 180.70066 * 1 2 3 29 29 H 1.09001 * 109.47267 * 300.70321 * 1 2 3 30 30 H 1.07991 * 126.12553 * 0.04111 * 4 3 2 31 31 H 1.08993 * 109.47051 * 210.00253 * 6 5 4 32 32 H 1.09003 * 109.46867 * 330.00353 * 6 5 4 33 33 H 0.96994 * 119.99941 * 174.96675 * 11 10 8 34 34 H 1.09003 * 115.55010 * 339.59457 * 16 7 6 35 35 H 1.08998 * 117.49909 * 0.02562 * 17 16 7 36 36 H 1.09000 * 117.49449 * 145.01655 * 17 16 7 37 37 H 1.08998 * 117.49807 * 214.97789 * 18 16 7 38 38 H 1.08996 * 117.49997 * 359.97438 * 18 16 7 39 39 H 1.08002 * 125.89542 * 179.97438 * 19 5 4 40 40 H 1.09003 * 110.02301 * 312.38578 * 21 2 1 41 41 H 1.08994 * 110.02493 * 73.80762 * 21 2 1 42 42 H 1.09000 * 110.78776 * 160.69706 * 22 21 2 43 43 H 1.08995 * 110.79060 * 284.16902 * 22 21 2 44 44 H 1.08994 * 110.32023 * 266.59873 * 26 2 1 45 45 H 1.09002 * 110.31598 * 28.79663 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0224 1.3797 0.0000 4 6 1.5571 2.3888 0.7659 5 6 2.2736 3.4973 0.4674 6 6 2.0917 4.8621 1.0800 7 7 2.9427 4.9822 2.2664 8 6 4.2211 5.4582 2.1467 9 1 5.0146 5.0305 2.7416 10 6 4.4972 6.4905 1.2607 11 7 3.5276 7.2770 0.8438 12 14 6.2448 6.7637 0.6601 13 1 6.7212 5.5475 -0.0464 14 1 6.2732 7.9205 -0.2705 15 1 7.1293 7.0406 1.8204 16 6 2.4262 4.5929 3.5809 17 6 3.2200 5.0363 4.8115 18 6 3.2316 3.5673 4.3811 19 6 3.2091 3.1537 -0.5140 20 7 3.0593 1.8847 -0.7951 21 6 2.0473 -0.7339 -1.2496 22 6 3.5592 -0.9894 -1.0198 23 16 3.6116 -1.5232 0.7329 24 8 3.4722 -2.9358 0.7993 25 8 4.7021 -0.8881 1.3862 26 6 2.0455 -0.7344 1.2536 27 1 -0.3634 0.5030 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 0.7566 2.3233 1.4878 31 1 2.3702 5.6261 0.3543 32 1 1.0485 4.9958 1.3662 33 1 3.7308 8.0420 0.2832 34 1 1.3402 4.5588 3.6680 35 1 4.1263 5.6179 4.6431 36 1 2.6561 5.2935 5.7082 37 1 2.6756 2.8587 4.9949 38 1 4.1456 3.1819 3.9294 39 1 3.9300 3.8210 -0.9629 40 1 1.5226 -1.6818 -1.3698 41 1 1.9039 -0.1126 -2.1336 42 1 3.9220 -1.7805 -1.6761 43 1 4.1324 -0.0734 -1.1625 44 1 2.2293 -0.0240 2.0596 45 1 1.3279 -1.4910 1.5710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352732236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = 49.316562 kcal Electronic energy + Delta-G solvation = -28796.277626 eV Core-core repulsion = 24944.259238 eV Total energy + Delta-G solvation = -3852.018388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.19026 -38.83290 -38.30601 -38.10999 -37.14666 -35.29882 -33.01949 -32.79551 -30.72948 -30.62175 -28.94792 -27.18157 -25.51741 -24.69925 -23.24270 -22.91322 -21.64158 -20.93963 -20.43467 -19.92932 -18.61775 -18.01413 -17.60316 -17.18639 -16.90823 -16.43239 -16.25723 -15.97602 -15.66873 -15.49744 -14.94980 -14.86473 -14.37157 -14.23820 -14.07849 -13.78168 -13.73596 -13.42080 -13.30628 -13.18930 -13.15441 -12.97669 -12.92821 -12.77225 -12.67358 -12.54640 -12.20612 -12.15407 -12.04700 -11.83314 -11.75908 -11.51497 -11.33617 -11.12119 -10.88357 -10.37969 -10.15310 -9.12818 -8.33748 -7.78986 -5.36897 -1.01362 1.02345 1.42869 1.46778 1.47547 1.52993 1.59450 2.04547 2.50787 2.51906 2.97660 3.19372 3.20352 3.21777 3.46104 3.52812 3.74304 3.77885 3.96238 4.07691 4.21102 4.33030 4.36085 4.47043 4.53042 4.57298 4.59314 4.71303 4.76777 4.80541 4.85897 4.95121 4.97528 5.03505 5.10332 5.22490 5.25436 5.38467 5.47186 5.58632 5.73283 5.84747 5.89791 6.30579 6.55439 6.89049 7.23780 7.94490 8.43585 9.16707 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013506 B = 0.003988 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.685979 B = 7018.930013 C = 7190.851870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.191 3.809 3 N -0.374 5.374 4 C 0.063 3.937 5 C -0.234 4.234 6 C 0.219 3.781 7 N -0.557 5.557 8 C -0.251 4.251 9 H 0.037 0.963 10 C -0.018 4.018 11 N -0.910 5.910 12 Si 0.939 3.061 13 H -0.284 1.284 14 H -0.287 1.287 15 H -0.283 1.283 16 C 0.116 3.884 17 C -0.199 4.199 18 C -0.211 4.211 19 C 0.048 3.952 20 N -0.318 5.318 21 C -0.108 4.108 22 C -0.572 4.572 23 S 2.372 3.628 24 O -0.963 6.963 25 O -0.993 6.993 26 C -0.592 4.592 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.195 0.805 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.254 0.746 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.108 0.892 42 H 0.164 0.836 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 -17.893 -3.412 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.107 3.893 3 N -0.159 5.159 4 C -0.082 4.082 5 C -0.247 4.247 6 C 0.093 3.907 7 N -0.274 5.274 8 C -0.382 4.382 9 H 0.054 0.946 10 C -0.216 4.216 11 N -0.554 5.554 12 Si 0.768 3.232 13 H -0.211 1.211 14 H -0.212 1.212 15 H -0.209 1.209 16 C 0.007 3.993 17 C -0.237 4.237 18 C -0.252 4.252 19 C -0.138 4.138 20 N -0.139 5.139 21 C -0.147 4.147 22 C -0.705 4.705 23 S 2.561 3.439 24 O -0.960 6.960 25 O -0.990 6.990 26 C -0.724 4.724 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.098 0.902 30 H 0.212 0.788 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.127 0.873 42 H 0.182 0.818 43 H 0.151 0.849 44 H 0.159 0.841 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.888 -19.418 -3.781 22.581 hybrid contribution 1.114 2.010 0.006 2.298 sum -9.773 -17.408 -3.775 20.318 Atomic orbital electron populations 1.22278 0.87681 1.06457 1.04548 1.21280 0.98248 0.76906 0.92849 1.48907 1.27362 1.08444 1.31221 1.22406 1.01074 0.86946 0.97787 1.21230 1.01117 0.99521 1.02861 1.19151 0.92018 0.90602 0.88963 1.43532 1.11811 1.71540 1.00490 1.18781 0.85540 1.12065 1.21840 0.94554 1.25555 0.99197 0.95403 1.01447 1.69968 1.32047 1.14875 1.38461 0.85793 0.82182 0.77007 0.78178 1.21050 1.21237 1.20914 1.21378 0.94516 0.99600 0.83778 1.23059 1.03542 0.97331 0.99817 1.23260 1.03398 0.92163 1.06365 1.23657 0.99142 0.92985 0.98011 1.77015 1.07654 1.10882 1.18385 1.22535 0.90547 1.03875 0.97706 1.30581 1.05798 1.13483 1.20609 1.09231 0.78326 0.75425 0.80867 1.93568 1.87197 1.28448 1.86823 1.93583 1.52683 1.78057 1.74706 1.31065 1.20950 1.13692 1.06697 0.90733 0.86168 0.90183 0.78812 0.91223 0.93705 0.93674 0.86791 0.91638 0.87867 0.87697 0.92912 0.82524 0.83611 0.87337 0.81775 0.84899 0.84141 0.78596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.17 71.98 0.59 -0.67 16 2 C 0.19 2.98 0.95 4.29 0.00 2.98 16 3 N -0.37 -9.69 3.40 -304.70 -1.04 -10.73 16 4 C 0.06 1.82 10.35 83.54 0.86 2.69 16 5 C -0.23 -8.89 5.68 -20.14 -0.11 -9.01 16 6 C 0.22 9.60 5.81 85.64 0.50 10.10 16 7 N -0.56 -26.56 2.76 -682.32 -1.89 -28.45 16 8 C -0.25 -13.63 8.04 84.03 0.68 -12.96 16 9 H 0.04 2.10 7.23 -2.91 -0.02 2.08 16 10 C -0.02 -0.98 4.97 84.86 0.42 -0.56 16 11 N -0.91 -51.08 11.45 21.65 0.25 -50.83 16 12 Si 0.94 45.06 29.60 68.60 2.03 47.10 16 13 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 14 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 16 C 0.12 4.67 6.61 44.99 0.30 4.97 16 17 C -0.20 -7.80 9.81 30.62 0.30 -7.50 16 18 C -0.21 -7.92 10.09 30.62 0.31 -7.61 16 19 C 0.05 1.87 11.96 85.23 1.02 2.89 16 20 N -0.32 -10.63 9.80 -57.02 -0.56 -11.18 16 21 C -0.11 -1.38 5.01 31.59 0.16 -1.22 16 22 C -0.57 -10.33 6.95 72.68 0.50 -9.82 16 23 S 2.37 53.61 6.10 -56.49 -0.34 53.27 16 24 O -0.96 -24.47 18.15 -127.47 -2.31 -26.78 16 25 O -0.99 -35.09 18.15 -127.47 -2.31 -37.40 16 26 C -0.59 -8.91 6.40 72.38 0.46 -8.45 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.12 0.17 8.12 -2.39 -0.02 0.15 16 29 H 0.08 0.64 7.34 -2.39 -0.02 0.62 16 30 H 0.20 4.15 7.54 -2.92 -0.02 4.13 16 31 H 0.07 3.57 5.52 -2.39 -0.01 3.56 16 32 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 33 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 34 H 0.11 3.90 8.10 -2.39 -0.02 3.89 16 35 H 0.06 3.01 6.95 -2.39 -0.02 2.99 16 36 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.16 16 38 H 0.05 2.32 8.01 -2.39 -0.02 2.30 16 39 H 0.16 6.58 8.06 -2.91 -0.02 6.56 16 40 H 0.15 0.59 8.11 -2.39 -0.02 0.57 16 41 H 0.11 1.57 8.07 -2.39 -0.02 1.55 16 42 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.13 3.26 6.42 -2.39 -0.02 3.24 16 44 H 0.14 2.56 7.87 -2.39 -0.02 2.54 16 45 H 0.20 1.15 7.87 -2.39 -0.02 1.13 16 Total: -1.00 -79.22 375.69 0.81 -78.41 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.99 Total: 20.76 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 5.99 Total: -34.17 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -3.23 Total: -101.19 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -4.63 Total: -64.18 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.34 Total: 53.27 kcal Total: -79.22 0.81 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352732236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.731 kcal (2) G-P(sol) polarization free energy of solvation -79.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds