Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34136 * 126.24466 * 2 1 4 4 C 1.30357 * 108.90433 * 180.14830 * 3 2 1 5 5 C 1.50698 * 125.48516 * 179.89604 * 4 3 2 6 6 C 1.53004 * 109.47334 * 89.68695 * 5 4 3 7 7 C 1.50699 * 109.47065 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00136 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99891 * 179.72953 * 7 6 5 10 10 C 1.37095 * 120.00382 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99553 * 17.12834 * 10 9 7 12 12 C 1.38952 * 120.00205 * 197.13560 * 10 9 7 13 13 N 1.31408 * 119.99972 * 20.31369 * 12 10 9 14 14 Si 1.86795 * 119.99853 * 200.32151 * 12 10 9 15 15 H 1.48506 * 109.47358 * 59.99484 * 14 12 10 16 16 H 1.48500 * 109.47456 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47304 * 300.00018 * 14 12 10 18 18 C 1.46504 * 119.99714 * 359.97438 * 9 7 6 19 19 C 1.47203 * 109.47290 * 84.31864 * 18 9 7 20 20 N 7.33117 * 141.66851 * 83.94065 * 2 1 3 21 21 O 1.33999 * 109.03415 * 359.62581 * 4 3 2 22 22 C 1.35118 * 107.71091 * 0.23470 * 21 4 3 23 23 C 1.47828 * 126.57990 * 179.97438 * 22 21 4 24 24 C 1.39579 * 120.14200 * 132.64185 * 23 22 21 25 25 C 1.37966 * 119.84683 * 179.71811 * 24 23 22 26 26 C 1.38354 * 120.14669 * 0.53095 * 25 24 23 27 27 C 1.38351 * 120.29253 * 359.76136 * 26 25 24 28 28 C 1.37960 * 120.14867 * 359.96226 * 27 26 25 29 29 H 1.09003 * 109.47139 * 265.00906 * 1 2 3 30 30 H 1.09001 * 109.46463 * 25.00886 * 1 2 3 31 31 H 1.08998 * 109.47221 * 145.00829 * 1 2 3 32 32 H 1.09000 * 109.46771 * 329.69236 * 5 4 3 33 33 H 1.08996 * 109.47238 * 209.69287 * 5 4 3 34 34 H 1.09000 * 109.46750 * 60.00527 * 6 5 4 35 35 H 1.08996 * 109.46710 * 300.00612 * 6 5 4 36 36 H 0.97000 * 119.99790 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.47100 * 204.31670 * 18 9 7 38 38 H 1.08996 * 109.47133 * 324.31683 * 18 9 7 39 39 H 1.07993 * 120.07604 * 359.97438 * 24 23 22 40 40 H 1.07999 * 119.92233 * 180.27582 * 25 24 23 41 41 H 1.07999 * 119.85202 * 179.75159 * 26 25 24 42 42 H 1.08006 * 119.92784 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.07922 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3001 1.0818 0.0000 4 6 3.5444 0.6933 -0.0032 5 6 4.7452 1.6039 -0.0065 6 6 5.1506 1.9186 1.4348 7 6 6.3510 2.8297 1.4314 8 8 6.8349 3.1913 0.3797 9 7 6.8838 3.2467 2.5971 10 6 7.9761 4.0752 2.5941 11 1 8.2431 4.6135 1.6966 12 6 8.7398 4.2222 3.7456 13 7 8.6863 3.3104 4.6903 14 14 9.8424 5.7160 3.9506 15 1 9.0174 6.9500 3.9073 16 1 10.5456 5.6368 5.2562 17 1 10.8405 5.7491 2.8515 18 6 6.2956 2.8147 3.8674 19 6 6.8385 1.4972 4.2366 20 7 7.2579 0.4800 4.5215 21 8 3.5841 -0.6461 0.0029 22 6 2.3097 -1.0950 0.0049 23 6 1.8731 -2.5074 0.0108 24 6 0.8851 -2.9319 0.9006 25 6 0.4781 -4.2502 0.8969 26 6 1.0550 -5.1530 0.0215 27 6 2.0391 -4.7400 -0.8588 28 6 2.4512 -3.4234 -0.8694 29 1 -0.3633 -0.0894 1.0238 30 1 -0.3632 0.9314 -0.4345 31 1 -0.3633 -0.8419 -0.5893 32 1 4.4972 2.5302 -0.5247 33 1 5.5728 1.1120 -0.5176 34 1 5.3986 0.9923 1.9530 35 1 4.3230 2.4105 1.9458 36 1 9.2191 3.4132 5.4943 37 1 6.5385 3.5387 4.6451 38 1 5.2130 2.7448 3.7614 39 1 0.4372 -2.2292 1.5875 40 1 -0.2895 -4.5790 1.5818 41 1 0.7356 -6.1847 0.0254 42 1 2.4857 -5.4498 -1.5394 43 1 3.2193 -3.1021 -1.5574 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358868847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = 24.817532 kcal Electronic energy + Delta-G solvation = -27746.214417 eV Core-core repulsion = 23757.689721 eV Total energy + Delta-G solvation = -3988.524697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.41278 -40.70392 -39.96488 -37.68747 -36.32607 -36.25297 -35.20940 -33.79434 -33.07632 -31.95898 -30.84522 -29.26960 -28.42460 -27.10077 -25.51613 -23.63455 -23.25228 -22.47714 -21.65782 -20.76914 -19.76704 -18.63857 -18.31119 -18.03334 -17.77019 -17.15432 -16.59949 -16.45866 -16.07732 -15.94625 -15.76325 -15.09765 -14.85114 -14.75222 -14.53004 -14.45580 -14.35725 -14.11982 -13.89919 -13.75010 -13.64146 -13.45157 -13.26957 -13.14605 -13.00832 -12.88762 -12.45802 -12.33603 -12.29028 -12.12635 -12.09872 -12.02745 -11.96012 -11.63666 -11.11745 -10.53299 -10.36041 -9.95376 -9.94410 -9.20472 -8.40063 -5.96497 -0.24120 0.40592 0.61151 1.41207 1.49214 1.52091 1.56476 1.60177 1.79395 2.02697 2.22238 2.35194 2.76695 2.81730 3.00422 3.19359 3.52439 3.57065 3.74090 3.84513 3.93331 3.99061 4.03670 4.08046 4.22639 4.36862 4.44948 4.46424 4.53879 4.61129 4.70346 4.73868 4.77513 4.86839 4.89718 4.91363 4.99922 5.04327 5.07707 5.33474 5.46070 5.48881 5.49139 5.52570 5.95958 6.01293 6.37993 6.64621 6.96817 7.10448 7.33513 7.88496 8.63300 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002357 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.161441 B =11876.066421 C =12486.720026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.001 4.001 3 N -0.490 5.490 4 C 0.199 3.801 5 C 0.003 3.997 6 C -0.118 4.118 7 C 0.454 3.546 8 O -0.610 6.610 9 N -0.453 5.453 10 C -0.340 4.340 11 H 0.086 0.914 12 C 0.004 3.996 13 N -0.894 5.894 14 Si 0.988 3.012 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.221 3.779 19 C 0.258 3.742 20 N -0.509 5.509 21 O -0.209 6.209 22 C -0.031 4.031 23 C -0.038 4.038 24 C -0.096 4.096 25 C -0.116 4.116 26 C -0.106 4.106 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.275 0.725 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.977 -12.150 -5.113 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 N -0.220 5.220 4 C -0.007 4.007 5 C -0.035 4.035 6 C -0.159 4.159 7 C 0.245 3.755 8 O -0.496 6.496 9 N -0.173 5.173 10 C -0.467 4.467 11 H 0.104 0.896 12 C -0.198 4.198 13 N -0.533 5.533 14 Si 0.813 3.187 15 H -0.184 1.184 16 H -0.206 1.206 17 H -0.208 1.208 18 C 0.094 3.906 19 C -0.060 4.060 20 N -0.190 5.190 21 O -0.097 6.097 22 C -0.083 4.083 23 C -0.038 4.038 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.176 0.824 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.165 -12.879 -5.011 24.446 hybrid contribution 1.602 0.480 0.038 1.673 sum -18.563 -12.399 -4.974 22.870 Atomic orbital electron populations 1.20284 0.83674 1.04229 1.04194 1.22399 0.99396 0.86407 1.04007 1.70299 1.00572 1.31891 1.19271 1.26367 0.95618 0.78794 0.99883 1.19718 0.89591 0.96416 0.97814 1.21487 0.97264 0.99669 0.97470 1.20635 0.87539 0.83765 0.83607 1.90527 1.66167 1.61093 1.31797 1.43788 1.27423 1.42342 1.03730 1.19635 1.06206 1.21313 0.99546 0.89571 1.25910 0.98393 0.99940 0.95535 1.69928 1.41547 1.32044 1.09774 0.85054 0.77877 0.78770 0.77015 1.18450 1.20591 1.20821 1.19109 0.96773 0.86032 0.88693 1.29831 0.90885 0.93727 0.91542 1.80928 1.11348 1.16277 1.10434 1.84494 1.30959 1.24293 1.69927 1.21703 0.80573 0.95883 1.10174 1.17757 0.99650 0.86560 0.99878 1.21375 0.95810 0.97453 0.96721 1.21469 1.00478 0.91984 0.99456 1.21727 0.95136 1.01260 0.94288 1.21394 0.97848 0.94859 0.99930 1.21420 0.99392 0.94144 0.98342 0.88791 0.90121 0.89337 0.86471 0.89029 0.89917 0.86214 0.91533 0.85408 0.84735 0.84344 0.82371 0.82672 0.83514 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 9.23 71.24 0.66 -0.48 16 2 C 0.00 -0.03 7.12 41.64 0.30 0.27 16 3 N -0.49 -15.15 11.27 -291.05 -3.28 -18.43 16 4 C 0.20 6.30 7.58 88.33 0.67 6.97 16 5 C 0.00 0.10 5.13 29.85 0.15 0.25 16 6 C -0.12 -3.94 4.29 29.85 0.13 -3.81 16 7 C 0.45 19.93 7.57 87.66 0.66 20.59 16 8 O -0.61 -31.14 15.63 -3.06 -0.05 -31.19 16 9 N -0.45 -20.68 2.60 -645.40 -1.68 -22.36 16 10 C -0.34 -17.39 9.34 84.04 0.79 -16.60 16 11 H 0.09 4.73 7.37 -2.91 -0.02 4.71 16 12 C 0.00 0.20 4.90 84.93 0.42 0.62 16 13 N -0.89 -44.29 9.39 21.66 0.20 -44.09 16 14 Si 0.99 39.75 29.60 68.60 2.03 41.78 16 15 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 16 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.22 8.38 4.91 84.57 0.42 8.80 16 19 C 0.26 11.21 13.00 89.44 1.16 12.37 16 20 N -0.51 -24.22 18.54 20.01 0.37 -23.85 16 21 O -0.21 -6.80 10.79 -7.79 -0.08 -6.88 16 22 C -0.03 -0.87 6.79 24.24 0.16 -0.70 16 23 C -0.04 -0.85 5.60 -20.09 -0.11 -0.96 16 24 C -0.10 -1.59 8.97 22.53 0.20 -1.39 16 25 C -0.12 -1.38 10.03 22.23 0.22 -1.16 16 26 C -0.11 -1.22 10.04 22.32 0.22 -0.99 16 27 C -0.12 -1.80 10.03 22.23 0.22 -1.58 16 28 C -0.11 -2.36 9.79 22.53 0.22 -2.14 16 29 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.24 7.93 -2.39 -0.02 1.22 16 32 H 0.12 3.68 8.10 -2.39 -0.02 3.66 16 33 H 0.09 3.03 8.10 -2.39 -0.02 3.01 16 34 H 0.08 2.80 7.53 -2.39 -0.02 2.78 16 35 H 0.12 3.31 7.40 -2.39 -0.02 3.29 16 36 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 37 H 0.13 4.99 6.39 -2.39 -0.02 4.97 16 38 H 0.14 3.69 6.67 -2.39 -0.02 3.67 16 39 H 0.14 1.92 7.54 -2.91 -0.02 1.90 16 40 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -70.80 377.17 5.06 -65.74 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.05 Total: 19.22 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 6.49 Total: 20.06 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.38 Total: -108.73 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.13 Total: -38.07 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -70.80 5.06 -65.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358868847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.557 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds