Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00063 * 2 1 4 4 C 1.50704 * 109.46744 * 275.00277 * 3 2 1 5 5 H 1.08002 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00090 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47183 * 90.00182 * 8 6 4 10 10 H 1.48495 * 109.46931 * 210.00402 * 8 6 4 11 11 H 1.48501 * 109.47115 * 330.00239 * 8 6 4 12 12 S 1.65600 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.42093 * 106.40290 * 336.46271 * 12 2 1 14 14 O 1.42101 * 106.40235 * 203.53600 * 12 2 1 15 15 N 1.65605 * 107.21533 * 90.00040 * 12 2 1 16 16 C 1.47933 * 134.63150 * 269.91624 * 15 12 2 17 17 C 1.53943 * 86.11862 * 204.69749 * 16 15 12 18 18 C 1.52999 * 113.74104 * 222.04624 * 17 16 15 19 19 C 1.53000 * 113.83698 * 90.75217 * 17 16 15 20 20 C 1.47582 * 134.49095 * 89.99827 * 15 12 2 21 21 H 1.09002 * 113.77116 * 269.66358 * 20 15 12 22 22 C 1.50700 * 113.77006 * 40.94956 * 20 15 12 23 23 C 1.38655 * 120.78655 * 18.37282 * 22 20 15 24 24 C 1.38206 * 119.15743 * 179.80032 * 23 22 20 25 25 N 1.31870 * 120.76650 * 0.48398 * 24 23 22 26 26 C 1.31869 * 121.72464 * 359.74357 * 25 24 23 27 27 C 1.38207 * 120.76667 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46973 * 269.99986 * 1 2 3 29 29 H 1.08993 * 109.47179 * 29.99861 * 1 2 3 30 30 H 1.09001 * 109.46950 * 150.00259 * 1 2 3 31 31 H 1.09000 * 109.46824 * 34.99514 * 3 2 1 32 32 H 1.08995 * 109.47184 * 155.00087 * 3 2 1 33 33 H 0.96998 * 120.00388 * 179.97438 * 7 6 4 34 34 H 1.08998 * 113.76908 * 90.39648 * 16 15 12 35 35 H 1.08993 * 113.86677 * 319.01822 * 16 15 12 36 36 H 1.09004 * 109.46890 * 156.67776 * 18 17 16 37 37 H 1.08997 * 109.47027 * 276.67355 * 18 17 16 38 38 H 1.08994 * 109.47109 * 36.67772 * 18 17 16 39 39 H 1.09000 * 109.47298 * 323.27572 * 19 17 16 40 40 H 1.08994 * 109.47724 * 83.27354 * 19 17 16 41 41 H 1.09003 * 109.47256 * 203.27731 * 19 17 16 42 42 H 1.07994 * 120.41784 * 0.02562 * 23 22 20 43 43 H 1.07998 * 119.61650 * 180.20580 * 24 23 22 44 44 H 1.08007 * 119.61696 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.42007 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9288 1.1934 -2.2332 6 6 2.9996 2.9509 -1.6665 7 7 3.5024 3.6474 -0.6707 8 14 3.1786 3.5665 -3.4210 9 1 2.0178 4.4264 -3.7647 10 1 4.4316 4.3539 -3.5439 11 1 3.2287 2.4084 -4.3492 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4062 0.5454 14 8 3.5760 -1.1565 0.5449 15 7 2.5381 -1.8593 -1.5810 16 6 1.7809 -2.6538 -2.5730 17 6 3.1369 -2.8917 -3.2620 18 6 3.0795 -2.7870 -4.7873 19 6 3.8649 -4.1470 -2.7772 20 6 3.6029 -1.5984 -2.5691 21 1 3.4405 -0.6988 -3.1628 22 6 4.9951 -1.6828 -1.9983 23 6 5.2315 -2.3346 -0.7976 24 6 6.5222 -2.3954 -0.3072 25 7 7.5199 -1.8347 -0.9624 26 6 7.3313 -1.2028 -2.1044 27 6 6.0689 -1.1054 -2.6585 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5894 32 1 3.1857 1.1177 0.4343 33 1 3.9659 4.4810 -0.8473 34 1 1.0833 -2.0643 -3.1678 35 1 1.3316 -3.5583 -2.1632 36 1 4.0716 -2.5521 -5.1729 37 1 2.7430 -3.7363 -5.2042 38 1 2.3831 -1.9982 -5.0714 39 1 3.6975 -4.2740 -1.7077 40 1 3.4830 -5.0174 -3.3105 41 1 4.9332 -4.0439 -2.9680 42 1 4.4180 -2.7921 -0.2544 43 1 6.7153 -2.9041 0.6256 44 1 8.1732 -0.7562 -2.6126 45 1 5.9209 -0.5863 -3.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431613748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = 3.750493 kcal Electronic energy + Delta-G solvation = -29919.479263 eV Core-core repulsion = 26065.484982 eV Total energy + Delta-G solvation = -3853.994281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69350 -38.93632 -36.70411 -35.50877 -35.32174 -32.53726 -32.42622 -31.97418 -30.83873 -27.83691 -27.49908 -26.32618 -25.37937 -25.08940 -23.06825 -22.27307 -21.99828 -18.76393 -18.30735 -17.53405 -16.93058 -16.38514 -16.23144 -16.06915 -15.41491 -15.37489 -14.92773 -14.52286 -14.43890 -13.98584 -13.63739 -13.41014 -13.37129 -13.29513 -12.93874 -12.43232 -12.36931 -12.33999 -12.22381 -12.07765 -11.87972 -11.78723 -11.56832 -11.31963 -11.25304 -11.20088 -11.00855 -10.77469 -10.67103 -10.57818 -10.39498 -10.13782 -9.83789 -9.32703 -9.07286 -8.80276 -8.63615 -8.54016 -8.06940 -6.15242 -4.22270 1.13274 1.54636 1.58314 3.18700 3.24251 3.27471 3.32492 3.99305 4.14661 4.29228 4.31052 4.67721 4.70347 4.73562 4.80879 5.00877 5.12103 5.18660 5.20186 5.44111 5.47851 5.53963 5.55487 5.57353 5.68068 5.71453 5.79986 5.87426 5.96063 5.98468 6.02088 6.04437 6.05545 6.10953 6.21218 6.28787 6.35504 6.53113 6.57323 6.85032 7.04745 7.28700 7.38844 7.59093 7.80648 8.10647 8.31936 8.81416 9.43380 10.92894 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009155 B = 0.006672 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.663129 B = 4195.711326 C = 5000.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.998 5.998 3 C 0.246 3.754 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.791 3.209 13 O -0.996 6.996 14 O -0.963 6.963 15 N -1.031 6.031 16 C 0.132 3.868 17 C -0.086 4.086 18 C -0.137 4.137 19 C -0.126 4.126 20 C 0.209 3.791 21 H 0.112 0.888 22 C -0.049 4.049 23 C -0.105 4.105 24 C 0.091 3.909 25 N -0.486 5.486 26 C 0.086 3.914 27 C -0.152 4.152 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -13.160 -7.557 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.839 5.839 3 C 0.123 3.877 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.719 3.281 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.802 3.198 13 O -0.981 6.981 14 O -0.948 6.948 15 N -0.869 5.869 16 C 0.006 3.994 17 C -0.088 4.088 18 C -0.196 4.196 19 C -0.183 4.183 20 C 0.102 3.898 21 H 0.130 0.870 22 C -0.058 4.058 23 C -0.126 4.126 24 C -0.065 4.065 25 N -0.195 5.195 26 C -0.071 4.071 27 C -0.172 4.172 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.263 -13.439 -6.107 14.764 hybrid contribution -1.098 1.225 -1.422 2.175 sum -0.835 -12.214 -7.529 14.372 Atomic orbital electron populations 1.21206 0.80281 1.01971 1.00593 1.57709 1.14162 1.23693 1.88359 1.19200 0.92090 0.78811 0.97557 1.21486 1.36688 1.06804 0.92801 0.92158 1.24951 0.95181 0.96527 0.97160 1.69925 1.36592 1.15093 1.30926 0.86605 0.77709 0.79028 0.84710 1.20641 1.21027 1.19736 1.01660 0.73143 0.72505 0.72446 1.93539 1.67370 1.60730 1.76424 1.93645 1.39730 1.85108 1.76298 1.60915 1.31985 1.66418 1.27543 1.22860 0.94089 0.94454 0.87956 1.22537 0.95870 0.95156 0.95285 1.21750 1.02485 1.02159 0.93163 1.21608 1.00187 0.95173 1.01356 1.21248 0.83184 0.98258 0.87119 0.87032 1.20099 0.94978 0.95741 0.94982 1.21832 0.97953 0.98282 0.94515 1.22542 0.88450 0.96856 0.98660 1.67586 1.35672 1.08493 1.07760 1.22564 0.96097 0.96261 0.92190 1.21825 0.93449 1.00272 1.01677 0.93799 0.90801 0.93076 0.94618 0.93178 0.92559 0.89775 0.89904 0.91980 0.92058 0.91863 0.92230 0.92071 0.91945 0.86198 0.83284 0.83168 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.31 59.85 0.62 2.48 16 2 N -1.00 -20.96 3.23 -123.05 -0.40 -21.36 16 3 C 0.25 6.15 5.41 -5.19 -0.03 6.13 16 4 C -0.54 -13.89 9.38 -34.44 -0.32 -14.22 16 5 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 8 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 S 2.79 55.67 5.91 -107.50 -0.64 55.03 16 13 O -1.00 -20.56 17.19 -57.17 -0.98 -21.55 16 14 O -0.96 -21.63 12.38 -57.17 -0.71 -22.34 16 15 N -1.03 -16.86 3.42 -111.61 -0.38 -17.25 16 16 C 0.13 1.63 8.08 -2.78 -0.02 1.60 16 17 C -0.09 -0.98 1.35 -153.57 -0.21 -1.19 16 18 C -0.14 -1.24 9.21 37.16 0.34 -0.90 16 19 C -0.13 -1.36 7.73 37.16 0.29 -1.07 16 20 C 0.21 3.18 4.11 -68.01 -0.28 2.90 16 21 H 0.11 1.79 8.10 -51.93 -0.42 1.37 16 22 C -0.05 -0.80 4.06 -104.32 -0.42 -1.23 16 23 C -0.11 -1.82 5.57 -39.44 -0.22 -2.04 16 24 C 0.09 1.54 11.18 -17.55 -0.20 1.34 16 25 N -0.49 -8.31 10.36 -13.25 -0.14 -8.44 16 26 C 0.09 1.32 11.18 -17.55 -0.20 1.13 16 27 C -0.15 -2.33 9.84 -39.44 -0.39 -2.71 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 31 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 35 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.57 7.94 -51.93 -0.41 0.15 16 39 H 0.06 0.71 6.99 -51.93 -0.36 0.35 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.69 7.38 -51.93 -0.38 0.31 16 42 H 0.12 2.09 5.03 -52.49 -0.26 1.83 16 43 H 0.15 2.15 8.06 -52.49 -0.42 1.73 16 44 H 0.15 1.85 8.06 -52.48 -0.42 1.42 16 45 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -32.75 374.76 -9.80 -42.55 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.79 Total: 3.26 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.14 Total: -6.13 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -0.18 Total: -71.65 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.69 Total: -43.89 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.64 Total: 55.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.75 -9.80 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431613748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.297 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds