Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46502 * 120.00063 * 2 1 4 4 C 1.50704 * 109.46744 * 275.00277 * 3 2 1 5 5 H 1.08002 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00090 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99923 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47183 * 90.00182 * 8 6 4 10 10 H 1.48495 * 109.46931 * 210.00402 * 8 6 4 11 11 H 1.48501 * 109.47115 * 330.00239 * 8 6 4 12 12 S 1.65600 * 120.00119 * 179.97438 * 2 1 3 13 13 O 1.42093 * 106.40290 * 336.46271 * 12 2 1 14 14 O 1.42101 * 106.40235 * 203.53600 * 12 2 1 15 15 N 1.65605 * 107.21533 * 90.00040 * 12 2 1 16 16 C 1.47933 * 134.63150 * 269.91624 * 15 12 2 17 17 C 1.53943 * 86.11862 * 204.69749 * 16 15 12 18 18 C 1.52999 * 113.74104 * 222.04624 * 17 16 15 19 19 C 1.53000 * 113.83698 * 90.75217 * 17 16 15 20 20 C 1.47582 * 134.49095 * 89.99827 * 15 12 2 21 21 H 1.09002 * 113.77116 * 269.66358 * 20 15 12 22 22 C 1.50700 * 113.77006 * 40.94956 * 20 15 12 23 23 C 1.38655 * 120.78655 * 18.37282 * 22 20 15 24 24 C 1.38206 * 119.15743 * 179.80032 * 23 22 20 25 25 N 1.31870 * 120.76650 * 0.48398 * 24 23 22 26 26 C 1.31869 * 121.72464 * 359.74357 * 25 24 23 27 27 C 1.38207 * 120.76667 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46973 * 269.99986 * 1 2 3 29 29 H 1.08993 * 109.47179 * 29.99861 * 1 2 3 30 30 H 1.09001 * 109.46950 * 150.00259 * 1 2 3 31 31 H 1.09000 * 109.46824 * 34.99514 * 3 2 1 32 32 H 1.08995 * 109.47184 * 155.00087 * 3 2 1 33 33 H 0.96998 * 120.00388 * 179.97438 * 7 6 4 34 34 H 1.08998 * 113.76908 * 90.39648 * 16 15 12 35 35 H 1.08993 * 113.86677 * 319.01822 * 16 15 12 36 36 H 1.09004 * 109.46890 * 156.67776 * 18 17 16 37 37 H 1.08997 * 109.47027 * 276.67355 * 18 17 16 38 38 H 1.08994 * 109.47109 * 36.67772 * 18 17 16 39 39 H 1.09000 * 109.47298 * 323.27572 * 19 17 16 40 40 H 1.08994 * 109.47724 * 83.27354 * 19 17 16 41 41 H 1.09003 * 109.47256 * 203.27731 * 19 17 16 42 42 H 1.07994 * 120.41784 * 0.02562 * 23 22 20 43 43 H 1.07998 * 119.61650 * 180.20580 * 24 23 22 44 44 H 1.08007 * 119.61696 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.42007 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9288 1.1934 -2.2332 6 6 2.9996 2.9509 -1.6665 7 7 3.5024 3.6474 -0.6707 8 14 3.1786 3.5665 -3.4210 9 1 2.0178 4.4264 -3.7647 10 1 4.4316 4.3539 -3.5439 11 1 3.2287 2.4084 -4.3492 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4062 0.5454 14 8 3.5760 -1.1565 0.5449 15 7 2.5381 -1.8593 -1.5810 16 6 1.7809 -2.6538 -2.5730 17 6 3.1369 -2.8917 -3.2620 18 6 3.0795 -2.7870 -4.7873 19 6 3.8649 -4.1470 -2.7772 20 6 3.6029 -1.5984 -2.5691 21 1 3.4405 -0.6988 -3.1628 22 6 4.9951 -1.6828 -1.9983 23 6 5.2315 -2.3346 -0.7976 24 6 6.5222 -2.3954 -0.3072 25 7 7.5199 -1.8347 -0.9624 26 6 7.3313 -1.2028 -2.1044 27 6 6.0689 -1.1054 -2.6585 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6501 2.0043 0.5894 32 1 3.1857 1.1177 0.4343 33 1 3.9659 4.4810 -0.8473 34 1 1.0833 -2.0643 -3.1678 35 1 1.3316 -3.5583 -2.1632 36 1 4.0716 -2.5521 -5.1729 37 1 2.7430 -3.7363 -5.2042 38 1 2.3831 -1.9982 -5.0714 39 1 3.6975 -4.2740 -1.7077 40 1 3.4830 -5.0174 -3.3105 41 1 4.9332 -4.0439 -2.9680 42 1 4.4180 -2.7921 -0.2544 43 1 6.7153 -2.9041 0.6256 44 1 8.1732 -0.7562 -2.6126 45 1 5.9209 -0.5863 -3.5938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431613748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -18.209677 kcal Electronic energy + Delta-G solvation = -29920.431527 eV Core-core repulsion = 26065.484982 eV Total energy + Delta-G solvation = -3854.946545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.83178 -40.10107 -38.33475 -37.24248 -36.96105 -34.50465 -33.63557 -32.99540 -32.06270 -29.70402 -28.30187 -27.47337 -26.83735 -26.41354 -24.41842 -24.03301 -23.20322 -20.02975 -19.49367 -19.00338 -18.69077 -18.11078 -17.54379 -17.46808 -16.81667 -16.63486 -16.45813 -15.91151 -15.52749 -15.23243 -15.12836 -14.85368 -14.63034 -14.53326 -14.13974 -14.01239 -13.95342 -13.58734 -13.39850 -13.29171 -13.18308 -13.05006 -12.99977 -12.93021 -12.77477 -12.53957 -12.44660 -12.30122 -12.07650 -11.94444 -11.76829 -11.67726 -11.34947 -10.62162 -10.56135 -10.31041 -10.05398 -9.89916 -9.73725 -8.18051 -6.33165 -0.38913 0.29643 0.33718 1.42457 1.43180 1.53870 1.87964 2.41017 2.51077 2.92415 3.10869 3.15331 3.43135 3.55220 3.62349 3.66229 3.92587 4.04427 4.10107 4.22211 4.28972 4.32415 4.56005 4.59481 4.61927 4.70901 4.74529 4.79473 4.87304 4.90682 4.90995 4.93951 5.01375 5.09165 5.13498 5.17124 5.22205 5.26647 5.39953 5.46790 5.53521 5.67071 5.73904 5.83465 5.88887 6.07301 6.78056 7.07236 7.37453 8.90350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009155 B = 0.006672 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.663129 B = 4195.711326 C = 5000.700891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.008 6.008 3 C 0.262 3.738 4 C -0.537 4.537 5 H 0.074 0.926 6 C 0.009 3.991 7 N -0.931 5.931 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.246 1.246 12 S 2.799 3.201 13 O -1.007 7.007 14 O -0.997 6.997 15 N -1.034 6.034 16 C 0.127 3.873 17 C -0.065 4.065 18 C -0.133 4.133 19 C -0.126 4.126 20 C 0.197 3.803 21 H 0.107 0.893 22 C -0.059 4.059 23 C -0.120 4.120 24 C 0.075 3.925 25 N -0.505 5.505 26 C 0.080 3.920 27 C -0.157 4.157 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.012 0.988 32 H 0.012 0.988 33 H 0.264 0.736 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.111 0.889 43 H 0.161 0.839 44 H 0.181 0.819 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 -14.224 -11.033 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.849 5.849 3 C 0.138 3.862 4 C -0.576 4.576 5 H 0.092 0.908 6 C -0.190 4.190 7 N -0.571 5.571 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.169 1.169 12 S 2.812 3.188 13 O -0.991 6.991 14 O -0.981 6.981 15 N -0.875 5.875 16 C 0.003 3.997 17 C -0.068 4.068 18 C -0.191 4.191 19 C -0.183 4.183 20 C 0.091 3.909 21 H 0.125 0.875 22 C -0.068 4.068 23 C -0.141 4.141 24 C -0.081 4.081 25 N -0.215 5.215 26 C -0.077 4.077 27 C -0.177 4.177 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.178 0.822 44 H 0.198 0.802 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.548 -14.535 -9.572 17.412 hybrid contribution -0.866 1.501 -0.316 1.761 sum -1.415 -13.034 -9.887 16.421 Atomic orbital electron populations 1.21422 0.78371 1.03293 1.01637 1.57688 1.15560 1.22486 1.89120 1.18699 0.90380 0.80022 0.97057 1.21748 1.35993 1.06715 0.93128 0.90803 1.25884 0.94801 0.96802 1.01519 1.70086 1.37859 1.15638 1.33527 0.85543 0.77314 0.79108 0.79777 1.20206 1.21524 1.16927 1.01192 0.72225 0.72031 0.73351 1.93512 1.67524 1.60628 1.77456 1.93603 1.41215 1.85448 1.77865 1.60737 1.33343 1.66345 1.27071 1.23276 0.94900 0.94650 0.86843 1.22454 0.94444 0.93063 0.96815 1.21755 1.03104 1.03655 0.90588 1.21623 1.00023 0.96023 1.00610 1.21528 0.82207 1.00255 0.86934 0.87508 1.20377 0.96146 0.95483 0.94838 1.21832 0.97811 0.99227 0.95222 1.22805 0.88619 0.97326 0.99352 1.67626 1.35845 1.09296 1.08703 1.23133 0.97344 0.95500 0.91717 1.22163 0.93067 0.99952 1.02569 0.93037 0.90627 0.90507 0.96946 0.96972 0.92714 0.87744 0.88640 0.91506 0.89789 0.91405 0.94037 0.89332 0.92443 0.87124 0.82177 0.80192 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.38 10.31 127.77 1.32 4.69 16 2 N -1.01 -42.74 3.23 -543.23 -1.75 -44.50 16 3 C 0.26 13.57 5.41 85.63 0.46 14.03 16 4 C -0.54 -27.65 9.38 25.60 0.24 -27.41 16 5 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 6 C 0.01 0.49 5.46 84.66 0.46 0.95 16 7 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 8 Si 0.96 40.46 29.54 68.60 2.03 42.48 16 9 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 12 S 2.80 112.66 5.91 -56.49 -0.33 112.33 16 13 O -1.01 -41.35 17.19 -128.00 -2.20 -43.55 16 14 O -1.00 -46.64 12.38 -128.00 -1.58 -48.23 16 15 N -1.03 -32.62 3.42 -507.01 -1.73 -34.35 16 16 C 0.13 2.76 8.08 86.41 0.70 3.46 16 17 C -0.06 -1.28 1.35 -51.53 -0.07 -1.35 16 18 C -0.13 -1.82 9.21 71.98 0.66 -1.15 16 19 C -0.13 -2.42 7.73 71.98 0.56 -1.87 16 20 C 0.20 5.68 4.11 44.35 0.18 5.86 16 21 H 0.11 3.18 8.10 -2.39 -0.02 3.16 16 22 C -0.06 -1.91 4.06 -19.67 -0.08 -1.99 16 23 C -0.12 -4.23 5.57 22.36 0.12 -4.11 16 24 C 0.07 2.58 11.18 84.68 0.95 3.53 16 25 N -0.50 -17.27 10.36 -195.84 -2.03 -19.30 16 26 C 0.08 2.37 11.18 84.68 0.95 3.32 16 27 C -0.16 -4.60 9.84 22.36 0.22 -4.38 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 30 H 0.08 2.21 7.79 -2.39 -0.02 2.20 16 31 H 0.01 0.69 8.11 -2.39 -0.02 0.67 16 32 H 0.01 0.72 6.91 -2.39 -0.02 0.71 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.10 1.87 7.96 -2.39 -0.02 1.85 16 35 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.90 7.94 -2.39 -0.02 0.88 16 39 H 0.04 0.95 6.99 -2.39 -0.02 0.93 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.17 7.38 -2.39 -0.02 1.16 16 42 H 0.11 4.02 5.03 -2.91 -0.01 4.00 16 43 H 0.16 4.86 8.06 -2.91 -0.02 4.83 16 44 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 45 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -72.64 374.76 0.33 -72.31 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.98 Total: 23.31 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.67 Total: -6.41 kcal Atomic # 7 Polarization: -147.02 SS G_CDS: -5.23 Total: -152.25 kcal Atomic # 8 Polarization: -87.99 SS G_CDS: -3.78 Total: -91.77 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 112.66 SS G_CDS: -0.33 Total: 112.33 kcal Total: -72.64 0.33 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431613748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.098 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds