Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47711 * 333.16625 * 3 2 1 5 5 C 1.36842 * 120.00165 * 272.16727 * 4 3 2 6 6 H 1.07994 * 119.99833 * 314.09684 * 5 4 3 7 7 C 1.39027 * 120.00043 * 134.10335 * 5 4 3 8 8 N 1.31387 * 120.00081 * 161.31835 * 7 5 4 9 9 Si 1.86802 * 120.00113 * 341.31628 * 7 5 4 10 10 H 1.48500 * 109.46772 * 95.26161 * 9 7 5 11 11 H 1.48495 * 109.47064 * 215.26182 * 9 7 5 12 12 H 1.48498 * 109.47095 * 335.26460 * 9 7 5 13 13 C 1.34776 * 119.99909 * 92.15736 * 4 3 2 14 14 O 1.21750 * 120.00568 * 184.17530 * 13 4 3 15 15 C 1.46516 * 119.99844 * 4.17673 * 13 4 3 16 16 N 1.38272 * 126.82872 * 254.71846 * 15 13 4 17 17 H 0.96997 * 126.55814 * 0.04669 * 16 15 13 18 18 C 1.35971 * 106.88227 * 180.02562 * 16 15 13 19 19 C 1.47800 * 125.50172 * 180.02562 * 18 16 15 20 20 C 1.39634 * 120.11864 * 0.02562 * 19 18 16 21 21 C 1.37955 * 119.96144 * 179.97438 * 20 19 18 22 22 C 1.38296 * 120.21019 * 359.97438 * 21 20 19 23 23 C 1.38821 * 120.24034 * 359.97438 * 22 21 20 24 24 O 1.35911 * 119.98283 * 180.02562 * 23 22 21 25 25 C 1.42895 * 117.00067 * 0.02562 * 24 23 22 26 26 C 1.38488 * 120.03498 * 359.79574 * 23 22 21 27 27 N 1.31823 * 108.99740 * 359.97438 * 18 16 15 28 28 C 1.32930 * 109.79472 * 359.97438 * 27 18 16 29 29 C 1.50694 * 126.00843 * 180.26085 * 28 27 18 30 30 H 4.40644 * 5.51380 * 179.97438 * 4 1 2 31 31 H 1.09005 * 109.46936 * 213.16719 * 3 2 1 32 32 H 1.08998 * 109.47325 * 93.17380 * 3 2 1 33 33 H 0.96998 * 120.00187 * 179.97438 * 8 7 5 34 34 H 1.07998 * 120.02416 * 359.97438 * 20 19 18 35 35 H 1.08007 * 119.89630 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.87769 * 180.02562 * 22 21 20 37 37 H 1.08991 * 109.47291 * 59.99809 * 25 24 23 38 38 H 1.09003 * 109.47461 * 180.02562 * 25 24 23 39 39 H 1.09011 * 109.47093 * 299.99922 * 25 24 23 40 40 H 1.07999 * 120.10005 * 180.22665 * 26 23 22 41 41 H 1.09000 * 109.47489 * 269.69208 * 29 28 27 42 42 H 1.09000 * 109.47218 * 29.69328 * 29 28 27 43 43 H 1.09002 * 109.46894 * 149.68943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2315 0.6234 5 6 3.3209 -1.2858 1.9781 6 1 3.8272 -0.4786 2.4864 7 6 2.8582 -2.3802 2.6999 8 7 3.3351 -2.6252 3.8994 9 14 1.5585 -3.5024 1.9644 10 1 2.2175 -4.6644 1.3158 11 1 0.6536 -3.9829 3.0394 12 1 0.7713 -2.7519 0.9534 13 6 3.4016 -2.3117 -0.1372 14 8 3.7349 -3.3586 0.3875 15 6 3.2903 -2.2263 -1.5956 16 7 2.2826 -2.7533 -2.3822 17 1 1.5100 -3.2521 -2.0739 18 6 2.5817 -2.4381 -3.6706 19 6 1.7736 -2.8025 -4.8533 20 6 0.5928 -3.5313 -4.6974 21 6 -0.1593 -3.8693 -5.8034 22 6 0.2521 -3.4882 -7.0676 23 6 1.4240 -2.7626 -7.2323 24 8 1.8232 -2.3903 -8.4770 25 6 0.9881 -2.7792 -9.5694 26 6 2.1843 -2.4138 -6.1286 27 7 3.7083 -1.7539 -3.6946 28 6 4.1697 -1.6030 -2.4571 29 6 5.4293 -0.8752 -2.0639 30 1 -1.0498 -0.0003 0.0003 31 1 3.0089 0.8611 0.5622 32 1 3.0093 0.0577 -1.0261 33 1 3.0120 -3.3886 4.4032 34 1 0.2683 -3.8302 -3.7116 35 1 -1.0723 -4.4333 -5.6817 36 1 -0.3410 -3.7553 -7.9297 37 1 -0.0046 -2.3486 -9.4392 38 1 1.4207 -2.4201 -10.5033 39 1 0.9116 -3.8662 -9.5993 40 1 3.0943 -1.8462 -6.2552 41 1 6.2656 -1.5742 -2.0562 42 1 5.6279 -0.0790 -2.7813 43 1 5.3054 -0.4458 -1.0697 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490987352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = 61.990790 kcal Electronic energy + Delta-G solvation = -28797.489471 eV Core-core repulsion = 24810.576727 eV Total energy + Delta-G solvation = -3986.912744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.27126 -41.06011 -40.57265 -38.38586 -37.04127 -34.70625 -34.49380 -33.48232 -33.18548 -31.56592 -31.03846 -28.72760 -28.31025 -28.14003 -26.36173 -24.49035 -23.64186 -22.54048 -21.88413 -20.96620 -19.96239 -19.50072 -19.04516 -17.99787 -17.53947 -17.28154 -17.06979 -16.84795 -16.67654 -16.51319 -16.03635 -15.72318 -15.58156 -14.94950 -14.75991 -14.61895 -14.59086 -14.43043 -14.04702 -14.01291 -13.84762 -13.53247 -13.19941 -13.09771 -12.93185 -12.80804 -12.62646 -12.25294 -12.09129 -11.89025 -11.57275 -11.46452 -11.19859 -11.15095 -10.88834 -10.79118 -10.41323 -9.90828 -9.37976 -8.95302 -8.54090 -6.33303 -0.32121 0.37277 0.75876 0.99831 1.19884 1.33656 1.41955 1.73124 1.82105 1.88984 1.92396 2.30217 2.35227 2.69883 2.78655 2.99215 3.07440 3.56383 3.67855 3.80226 3.86704 3.97930 4.06468 4.12535 4.26173 4.34658 4.44917 4.46269 4.50849 4.57445 4.70171 4.77527 4.78090 4.88059 4.94003 4.98133 5.03974 5.18310 5.31928 5.35565 5.53971 5.57757 5.60206 5.75583 6.07786 6.41249 6.52806 6.65602 6.67754 6.74127 7.11750 7.60071 8.54611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.003212 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.944573 B = 8714.783511 C = 9154.243124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.225 4.225 3 C 0.203 3.797 4 N -0.444 5.444 5 C -0.345 4.345 6 H 0.087 0.913 7 C 0.052 3.948 8 N -0.895 5.895 9 Si 0.945 3.055 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.258 1.258 13 C 0.528 3.472 14 O -0.575 6.575 15 C -0.059 4.059 16 N -0.535 5.535 17 H 0.427 0.573 18 C 0.258 3.742 19 C 0.009 3.991 20 C -0.154 4.154 21 C -0.068 4.068 22 C -0.191 4.191 23 C 0.123 3.877 24 O -0.335 6.335 25 C 0.016 3.984 26 C -0.126 4.126 27 N -0.480 5.480 28 C 0.052 3.948 29 C -0.073 4.073 30 H 0.249 0.751 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.276 0.724 34 H 0.129 0.871 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.070 0.930 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 1.501 -25.723 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.226 4.226 3 C 0.082 3.918 4 N -0.164 5.164 5 C -0.472 4.472 6 H 0.104 0.896 7 C -0.154 4.154 8 N -0.531 5.531 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.182 1.182 13 C 0.317 3.683 14 O -0.458 6.458 15 C -0.178 4.178 16 N -0.138 5.138 17 H 0.266 0.734 18 C -0.001 4.001 19 C 0.007 3.993 20 C -0.174 4.174 21 C -0.086 4.086 22 C -0.210 4.210 23 C 0.077 3.923 24 O -0.249 6.249 25 C -0.078 4.078 26 C -0.146 4.146 27 N -0.199 5.199 28 C -0.083 4.083 29 C -0.130 4.130 30 H 0.265 0.735 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.096 0.904 42 H 0.118 0.882 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.549 1.348 -25.996 27.727 hybrid contribution -1.302 -1.358 1.390 2.339 sum -10.851 -0.010 -24.606 26.892 Atomic orbital electron populations 1.25641 0.96680 0.98570 1.00411 1.24017 0.95731 1.01989 1.00887 1.18834 0.84101 0.89012 0.99857 1.43509 1.55799 1.11196 1.05896 1.18789 1.39144 1.08542 0.80745 0.89579 1.25930 0.96834 0.97901 0.94735 1.69785 1.40656 1.28921 1.13763 0.85766 0.78092 0.80427 0.78281 1.20848 1.22403 1.18234 1.17457 0.81160 0.85477 0.84234 1.90688 1.51068 1.30286 1.73772 1.21111 0.95628 1.09051 0.92039 1.43212 1.21086 1.42796 1.06714 0.73365 1.21510 0.94732 1.00356 0.83508 1.17328 0.94006 0.99747 0.88200 1.21223 0.94532 1.00891 1.00734 1.21150 0.99625 0.97294 0.90551 1.21712 0.96961 1.02296 0.99989 1.18892 0.93592 0.94914 0.84858 1.86083 1.51111 1.74418 1.13270 1.23405 0.95509 1.01488 0.87372 1.20321 1.01605 1.03536 0.89172 1.70051 1.08905 1.18313 1.22678 1.21511 0.98590 1.00975 0.87188 1.20259 0.90798 0.99752 1.02227 0.73497 0.86807 0.87606 0.91472 0.85348 0.81866 0.81936 0.91186 0.86507 0.91292 0.85045 0.90446 0.88217 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.20 19.25 74.32 1.43 -4.77 16 2 C -0.23 -8.35 13.67 31.13 0.43 -7.92 16 3 C 0.20 7.68 5.76 84.57 0.49 8.17 16 4 N -0.44 -21.09 2.05 -650.14 -1.33 -22.43 16 5 C -0.35 -19.28 9.64 84.10 0.81 -18.47 16 6 H 0.09 4.98 8.06 -2.91 -0.02 4.96 16 7 C 0.05 3.10 4.86 84.95 0.41 3.51 16 8 N -0.90 -55.12 13.96 21.68 0.30 -54.82 16 9 Si 0.95 49.59 24.91 68.60 1.71 51.30 16 10 H -0.28 -15.81 6.39 99.48 0.64 -15.17 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 12 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.53 25.66 5.56 86.40 0.48 26.14 16 14 O -0.57 -33.08 12.72 -4.51 -0.06 -33.14 16 15 C -0.06 -2.39 5.51 40.23 0.22 -2.17 16 16 N -0.53 -18.53 6.11 -176.43 -1.08 -19.61 16 17 H 0.43 13.24 8.04 -92.71 -0.75 12.50 16 18 C 0.26 8.34 7.74 136.56 1.06 9.40 16 19 C 0.01 0.24 5.87 -20.10 -0.12 0.13 16 20 C -0.15 -3.16 9.69 22.54 0.22 -2.94 16 21 C -0.07 -1.02 10.03 22.22 0.22 -0.80 16 22 C -0.19 -2.78 9.03 22.42 0.20 -2.58 16 23 C 0.12 2.48 6.68 22.47 0.15 2.63 16 24 O -0.33 -6.22 10.49 -92.55 -0.97 -7.19 16 25 C 0.02 0.14 9.81 113.37 1.11 1.25 16 26 C -0.13 -3.17 9.62 22.64 0.22 -2.95 16 27 N -0.48 -16.69 10.79 -176.01 -1.90 -18.59 16 28 C 0.05 1.88 6.16 42.33 0.26 2.14 16 29 C -0.07 -2.20 10.06 71.23 0.72 -1.48 16 30 H 0.25 5.46 7.80 -4.43 -0.03 5.42 16 31 H 0.11 3.89 8.06 -2.38 -0.02 3.87 16 32 H 0.11 3.61 5.61 -2.39 -0.01 3.59 16 33 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 34 H 0.13 2.36 7.13 -2.91 -0.02 2.34 16 35 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.16 1.26 6.28 -2.91 -0.02 1.24 16 37 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 38 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.40 7.66 -2.38 -0.02 0.38 16 40 H 0.13 3.60 7.82 -2.91 -0.02 3.58 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 43 H 0.07 2.25 7.81 -2.39 -0.02 2.23 16 Total: -1.00 -79.30 373.28 5.22 -74.08 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.24 Total: 21.12 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 8.31 Total: 9.27 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -4.01 Total: -115.44 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -1.03 Total: -40.33 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.71 Total: 51.30 kcal Total: -79.30 5.22 -74.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490987352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.070 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds