Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.76176 * 125.97095 * 2 1 4 4 C 1.70975 * 90.33670 * 179.97438 * 3 2 1 5 5 N 1.38745 * 124.94296 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00075 * 0.29072 * 5 4 3 7 7 O 1.21377 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.49308 * 120.00008 * 179.97438 * 6 5 4 9 9 O 1.21365 * 120.00062 * 0.02562 * 8 6 5 10 10 N 1.34770 * 119.99880 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99978 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47324 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47249 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46835 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00227 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99851 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99956 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47599 * 89.99229 * 18 16 14 20 20 H 1.48493 * 109.47026 * 210.00076 * 18 16 14 21 21 H 1.48504 * 109.46814 * 329.99538 * 18 16 14 22 22 N 1.29682 * 110.11308 * 0.32028 * 4 3 2 23 23 C 1.31916 * 116.92435 * 359.74645 * 22 4 3 24 24 C 1.50700 * 122.71519 * 180.02562 * 23 22 4 25 25 C 1.53012 * 109.46971 * 299.97715 * 24 23 22 26 26 C 1.52998 * 109.47509 * 59.97218 * 24 23 22 27 27 H 1.09002 * 109.47152 * 269.68662 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68762 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68743 * 1 2 3 30 30 H 0.96998 * 120.00074 * 180.28837 * 5 4 3 31 31 H 0.97002 * 120.00429 * 0.02562 * 10 8 6 32 32 H 1.08994 * 109.47531 * 300.00755 * 11 10 8 33 33 H 1.09009 * 109.46595 * 60.00570 * 11 10 8 34 34 H 1.09000 * 109.47055 * 300.00238 * 12 11 10 35 35 H 1.09000 * 109.47244 * 60.00441 * 12 11 10 36 36 H 1.09000 * 109.46954 * 299.99894 * 13 12 11 37 37 H 1.09000 * 109.46969 * 59.99867 * 13 12 11 38 38 H 0.97000 * 120.00099 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.47422 * 179.97438 * 24 23 22 40 40 H 1.08995 * 109.46773 * 59.99939 * 25 24 23 41 41 H 1.08994 * 109.46867 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.46575 * 299.99975 * 25 24 23 43 43 H 1.09006 * 109.46434 * 60.00006 * 26 24 23 44 44 H 1.08994 * 109.47338 * 179.97438 * 26 24 23 45 45 H 1.08995 * 109.47459 * 300.00811 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5418 1.4258 0.0000 4 6 3.9314 0.4297 0.0008 5 7 5.2399 0.8911 0.0016 6 6 5.4874 2.2160 0.0078 7 8 4.5654 3.0054 0.0131 8 6 6.8955 2.7124 0.0093 9 8 7.8173 1.9230 0.0045 10 7 7.1428 4.0372 0.0150 11 6 8.5245 4.5244 0.0171 12 6 8.5258 6.0544 0.0243 13 6 9.9688 6.5632 0.0258 14 6 9.9700 8.0701 0.0323 15 1 9.0352 8.6109 0.0355 16 6 11.1646 8.7585 0.0352 17 7 11.1658 10.0736 0.0403 18 14 12.7816 7.8232 0.0304 19 1 13.2097 7.5817 -1.3709 20 1 13.8173 8.6216 0.7339 21 1 12.6031 6.5225 0.7245 22 7 3.5844 -0.8198 -0.0058 23 6 2.2913 -1.0806 -0.0064 24 6 1.7436 -2.4846 -0.0132 25 6 2.2291 -3.2154 -1.2668 26 6 2.2314 -3.2284 1.2317 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 5.9767 0.2602 -0.0022 31 1 6.4061 4.6682 0.0185 32 1 9.0381 4.1568 0.9053 33 1 9.0379 4.1645 -0.8746 34 1 8.0121 6.4223 -0.8638 35 1 8.0125 6.4140 0.9161 36 1 10.4828 6.1952 0.9137 37 1 10.4817 6.2036 -0.8662 38 1 12.0062 10.5579 0.0420 39 1 0.6542 -2.4496 -0.0119 40 1 3.3185 -3.2503 -1.2679 41 1 1.8326 -4.2306 -1.2719 42 1 1.8816 -2.6855 -2.1536 43 1 1.8856 -2.7077 2.1247 44 1 1.8349 -4.2436 1.2270 45 1 3.3208 -3.2633 1.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515171695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -43.360645 kcal Electronic energy + Delta-G solvation = -25678.570205 eV Core-core repulsion = 21822.533031 eV Total energy + Delta-G solvation = -3856.037173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39014 -40.37080 -39.02968 -36.48920 -35.76940 -34.43285 -33.42664 -32.36712 -31.58859 -28.16846 -27.46538 -27.16804 -25.38066 -24.11714 -22.92883 -22.01785 -21.26108 -20.70893 -19.56690 -18.39362 -17.96536 -17.29306 -16.78796 -16.67534 -16.46076 -15.56816 -15.52834 -15.28538 -14.87822 -14.43840 -14.40179 -13.97955 -13.95579 -13.58576 -13.40031 -13.25928 -13.00788 -12.77779 -12.60869 -12.47134 -12.19960 -12.08989 -12.05233 -11.63206 -11.22693 -11.20084 -11.04836 -10.97538 -10.93859 -10.27967 -10.09100 -10.02405 -9.88347 -9.73208 -9.39747 -9.29365 -9.27661 -8.60333 -8.49866 -6.10609 -4.10032 0.23616 0.76937 1.06342 1.46462 1.75256 2.42328 2.86513 3.15057 3.27342 3.35430 3.38055 4.01917 4.13708 4.39740 4.47477 4.61623 4.81583 4.84053 4.89651 5.14025 5.22911 5.25818 5.30379 5.32145 5.32857 5.45716 5.47189 5.53777 5.56096 5.67118 5.82183 5.88489 5.90969 5.94468 5.97955 6.19164 6.29524 6.44548 6.65751 6.91188 7.13582 7.20816 7.26942 7.44419 7.67165 7.70418 8.44981 8.93117 9.50967 11.02496 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.001744 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.872233 B =16048.580505 C =16747.480504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.280 4.280 3 S 0.245 5.755 4 C 0.234 3.766 5 N -0.597 5.597 6 C 0.508 3.492 7 O -0.483 6.483 8 C 0.513 3.487 9 O -0.514 6.514 10 N -0.684 5.684 11 C 0.111 3.889 12 C -0.116 4.116 13 C -0.010 4.010 14 C -0.524 4.524 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 N -0.495 5.495 23 C 0.094 3.906 24 C -0.019 4.019 25 C -0.141 4.141 26 C -0.141 4.141 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.435 0.565 31 H 0.415 0.585 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 -25.864 -0.086 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.402 4.402 3 S 0.497 5.503 4 C -0.133 4.133 5 N -0.248 5.248 6 C 0.289 3.711 7 O -0.355 6.355 8 C 0.291 3.709 9 O -0.391 6.391 10 N -0.336 5.336 11 C -0.011 4.011 12 C -0.154 4.154 13 C -0.048 4.048 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 N -0.217 5.217 23 C -0.039 4.039 24 C -0.040 4.040 25 C -0.199 4.199 26 C -0.198 4.198 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.276 0.724 31 H 0.251 0.749 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.141 -24.902 -0.088 33.322 hybrid contribution 0.843 -1.200 -0.016 1.466 sum -21.298 -26.102 -0.104 33.689 Atomic orbital electron populations 1.20170 0.86905 1.03093 1.02700 1.26202 1.02248 0.97028 1.14696 1.84940 0.92610 1.04958 1.67794 1.23162 0.91483 0.93264 1.05366 1.42369 1.05368 1.08183 1.68903 1.20785 0.91564 0.81585 0.77196 1.90724 1.45158 1.53954 1.45680 1.19269 0.87367 0.84390 0.79847 1.90822 1.44686 1.55036 1.48506 1.46004 1.11609 1.05486 1.70473 1.21947 0.79428 0.96903 1.02835 1.21760 1.01453 0.89839 1.02313 1.19504 0.91105 0.97442 0.96772 1.21073 0.94588 0.89200 1.51378 0.90919 1.25029 0.99234 0.94754 0.94419 1.69906 1.26987 1.06350 1.50725 0.86777 0.83546 0.80387 0.78581 1.20232 1.21330 1.18921 1.66011 1.18524 1.16231 1.20968 1.19616 0.85900 0.96578 1.01797 1.19784 0.99443 0.88054 0.96763 1.21783 1.02341 0.99485 0.96309 1.21771 1.02306 0.99402 0.96366 0.90780 0.90488 0.91198 0.72382 0.74893 0.90750 0.90745 0.91693 0.91667 0.96195 0.96628 0.92636 0.89581 0.91755 0.92239 0.92858 0.92856 0.92242 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 9.91 36.01 0.36 -0.04 16 2 C -0.28 -2.48 6.58 -35.96 -0.24 -2.71 16 3 S 0.25 2.52 20.21 -107.50 -2.17 0.34 16 4 C 0.23 2.65 8.18 -87.55 -0.72 1.93 16 5 N -0.60 -6.44 5.39 -13.55 -0.07 -6.51 16 6 C 0.51 5.91 7.85 -11.65 -0.09 5.82 16 7 O -0.48 -6.02 13.93 5.47 0.08 -5.94 16 8 C 0.51 6.56 7.88 -11.65 -0.09 6.47 16 9 O -0.51 -7.65 16.47 5.48 0.09 -7.56 16 10 N -0.68 -8.64 5.55 -60.78 -0.34 -8.98 16 11 C 0.11 1.62 5.67 -4.04 -0.02 1.60 16 12 C -0.12 -2.01 5.27 -26.73 -0.14 -2.15 16 13 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 14 C -0.52 -14.38 9.66 -34.44 -0.33 -14.72 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 18 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 22 N -0.50 -5.58 10.48 -11.32 -0.12 -5.70 16 23 C 0.09 0.90 5.31 -84.20 -0.45 0.45 16 24 C -0.02 -0.14 3.18 -91.77 -0.29 -0.43 16 25 C -0.14 -0.98 9.14 37.16 0.34 -0.64 16 26 C -0.14 -0.97 9.14 37.16 0.34 -0.63 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.34 6.80 -51.93 -0.35 -0.02 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.44 4.23 8.29 -40.82 -0.34 3.90 16 31 H 0.41 4.65 7.94 -40.82 -0.32 4.33 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.09 0.47 6.29 -51.93 -0.33 0.15 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -31.77 389.58 -8.87 -40.64 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.77 Total: 1.36 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.55 Total: -3.57 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.24 Total: -47.67 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.17 Total: -13.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.17 Total: 0.34 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.77 -8.87 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515171695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.717 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds