Wall clock time and date at job start Sat Apr 11 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.76176 * 125.97095 * 2 1 4 4 C 1.70975 * 90.33670 * 179.97438 * 3 2 1 5 5 N 1.38745 * 124.94296 * 180.02562 * 4 3 2 6 6 C 1.34780 * 120.00075 * 0.29072 * 5 4 3 7 7 O 1.21377 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.49308 * 120.00008 * 179.97438 * 6 5 4 9 9 O 1.21365 * 120.00062 * 0.02562 * 8 6 5 10 10 N 1.34770 * 119.99880 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99978 * 179.97438 * 10 8 6 12 12 C 1.52999 * 109.47324 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47249 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46835 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00227 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99851 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99956 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47599 * 89.99229 * 18 16 14 20 20 H 1.48493 * 109.47026 * 210.00076 * 18 16 14 21 21 H 1.48504 * 109.46814 * 329.99538 * 18 16 14 22 22 N 1.29682 * 110.11308 * 0.32028 * 4 3 2 23 23 C 1.31916 * 116.92435 * 359.74645 * 22 4 3 24 24 C 1.50700 * 122.71519 * 180.02562 * 23 22 4 25 25 C 1.53012 * 109.46971 * 299.97715 * 24 23 22 26 26 C 1.52998 * 109.47509 * 59.97218 * 24 23 22 27 27 H 1.09002 * 109.47152 * 269.68662 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68762 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68743 * 1 2 3 30 30 H 0.96998 * 120.00074 * 180.28837 * 5 4 3 31 31 H 0.97002 * 120.00429 * 0.02562 * 10 8 6 32 32 H 1.08994 * 109.47531 * 300.00755 * 11 10 8 33 33 H 1.09009 * 109.46595 * 60.00570 * 11 10 8 34 34 H 1.09000 * 109.47055 * 300.00238 * 12 11 10 35 35 H 1.09000 * 109.47244 * 60.00441 * 12 11 10 36 36 H 1.09000 * 109.46954 * 299.99894 * 13 12 11 37 37 H 1.09000 * 109.46969 * 59.99867 * 13 12 11 38 38 H 0.97000 * 120.00099 * 180.02562 * 17 16 14 39 39 H 1.08995 * 109.47422 * 179.97438 * 24 23 22 40 40 H 1.08995 * 109.46773 * 59.99939 * 25 24 23 41 41 H 1.08994 * 109.46867 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.46575 * 299.99975 * 25 24 23 43 43 H 1.09006 * 109.46434 * 60.00006 * 26 24 23 44 44 H 1.08994 * 109.47338 * 179.97438 * 26 24 23 45 45 H 1.08995 * 109.47459 * 300.00811 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5418 1.4258 0.0000 4 6 3.9314 0.4297 0.0008 5 7 5.2399 0.8911 0.0016 6 6 5.4874 2.2160 0.0078 7 8 4.5654 3.0054 0.0131 8 6 6.8955 2.7124 0.0093 9 8 7.8173 1.9230 0.0045 10 7 7.1428 4.0372 0.0150 11 6 8.5245 4.5244 0.0171 12 6 8.5258 6.0544 0.0243 13 6 9.9688 6.5632 0.0258 14 6 9.9700 8.0701 0.0323 15 1 9.0352 8.6109 0.0355 16 6 11.1646 8.7585 0.0352 17 7 11.1658 10.0736 0.0403 18 14 12.7816 7.8232 0.0304 19 1 13.2097 7.5817 -1.3709 20 1 13.8173 8.6216 0.7339 21 1 12.6031 6.5225 0.7245 22 7 3.5844 -0.8198 -0.0058 23 6 2.2913 -1.0806 -0.0064 24 6 1.7436 -2.4846 -0.0132 25 6 2.2291 -3.2154 -1.2668 26 6 2.2314 -3.2284 1.2317 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 5.9767 0.2602 -0.0022 31 1 6.4061 4.6682 0.0185 32 1 9.0381 4.1568 0.9053 33 1 9.0379 4.1645 -0.8746 34 1 8.0121 6.4223 -0.8638 35 1 8.0125 6.4140 0.9161 36 1 10.4828 6.1952 0.9137 37 1 10.4817 6.2036 -0.8662 38 1 12.0062 10.5579 0.0420 39 1 0.6542 -2.4496 -0.0119 40 1 3.3185 -3.2503 -1.2679 41 1 1.8326 -4.2306 -1.2719 42 1 1.8816 -2.6855 -2.1536 43 1 1.8856 -2.7077 2.1247 44 1 1.8349 -4.2436 1.2270 45 1 3.3208 -3.2633 1.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515171695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:41 Heat of formation + Delta-G solvation = -64.575704 kcal Electronic energy + Delta-G solvation = -25679.490158 eV Core-core repulsion = 21822.533031 eV Total energy + Delta-G solvation = -3856.957127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32491 -41.15203 -40.03843 -37.47429 -36.85033 -35.35013 -34.98413 -33.34671 -32.96786 -29.55673 -28.15128 -27.99476 -26.38759 -25.02815 -24.20492 -22.78958 -22.33201 -22.08139 -20.58531 -19.26753 -19.01188 -18.67754 -18.07545 -17.63421 -17.38817 -16.66259 -16.59855 -16.15401 -15.91458 -15.86453 -15.24254 -15.07534 -15.00034 -14.77743 -14.19458 -13.96197 -13.85058 -13.82497 -13.66072 -13.63357 -13.36553 -13.01576 -12.81710 -12.74620 -12.70791 -12.22796 -11.98066 -11.80987 -11.77773 -11.73568 -11.60843 -11.56529 -11.32933 -10.94630 -10.79779 -10.75040 -10.38937 -10.17667 -9.23800 -8.28006 -6.32330 -0.59866 -0.00514 0.17023 0.64540 0.90579 1.38798 1.40494 1.51786 1.59566 1.95032 2.19938 2.37626 3.07872 3.08038 3.38430 3.91184 3.99411 4.03701 4.17502 4.26523 4.27992 4.35360 4.47151 4.52396 4.74066 4.76507 4.82278 4.83679 4.86394 4.94364 4.99325 5.00259 5.02362 5.09327 5.18730 5.29777 5.30575 5.37091 5.46712 5.50349 5.56181 5.65981 5.97590 6.24874 6.28387 6.65055 6.68551 6.76496 7.32486 8.88432 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030902 B = 0.001744 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.872233 B =16048.580505 C =16747.480504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.266 4.266 3 S 0.232 5.768 4 C 0.210 3.790 5 N -0.591 5.591 6 C 0.516 3.484 7 O -0.492 6.492 8 C 0.520 3.480 9 O -0.534 6.534 10 N -0.678 5.678 11 C 0.123 3.877 12 C -0.105 4.105 13 C -0.012 4.012 14 C -0.532 4.532 15 H 0.035 0.965 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.287 1.287 21 H -0.243 1.243 22 N -0.505 5.505 23 C 0.073 3.927 24 C -0.019 4.019 25 C -0.138 4.138 26 C -0.137 4.137 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.438 0.562 31 H 0.422 0.578 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.765 -28.470 -0.103 37.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.388 4.388 3 S 0.483 5.517 4 C -0.156 4.156 5 N -0.242 5.242 6 C 0.296 3.704 7 O -0.366 6.366 8 C 0.299 3.701 9 O -0.412 6.412 10 N -0.331 5.331 11 C 0.001 3.999 12 C -0.143 4.143 13 C -0.050 4.050 14 C -0.570 4.570 15 H 0.054 0.946 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.772 3.228 19 H -0.193 1.193 20 H -0.213 1.213 21 H -0.166 1.166 22 N -0.227 5.227 23 C -0.059 4.059 24 C -0.040 4.040 25 C -0.196 4.196 26 C -0.195 4.195 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.280 0.720 31 H 0.260 0.740 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.256 -27.539 -0.105 36.045 hybrid contribution 1.018 -0.388 -0.011 1.089 sum -22.238 -27.926 -0.116 35.699 Atomic orbital electron populations 1.20358 0.84471 1.04393 1.03938 1.26609 1.03675 0.95791 1.12727 1.84909 0.92878 1.06070 1.67818 1.23288 0.91665 0.93629 1.06968 1.42248 1.05601 1.07874 1.68448 1.20404 0.90770 0.81820 0.77387 1.90730 1.45166 1.54273 1.46398 1.19327 0.87636 0.84032 0.79110 1.90815 1.45419 1.55497 1.49434 1.45827 1.11151 1.05761 1.70336 1.21639 0.80459 0.94664 1.03159 1.21531 0.98457 0.91839 1.02487 1.19467 0.94391 0.93898 0.97225 1.21486 0.93176 0.92106 1.50278 0.94637 1.26022 1.03570 0.95598 0.94225 1.70066 1.28085 1.08378 1.52700 0.85674 0.78275 0.79648 0.79160 1.19275 1.21344 1.16616 1.66023 1.19729 1.16339 1.20651 1.20079 0.85449 0.98010 1.02321 1.19927 1.00643 0.86629 0.96815 1.21752 1.01100 1.00585 0.96134 1.21740 1.01069 1.00499 0.96192 0.89434 0.88619 0.90431 0.72020 0.73996 0.90514 0.90440 0.91607 0.91615 0.95618 0.95741 0.92578 0.87268 0.93706 0.90327 0.93074 0.93098 0.90333 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.91 71.24 0.71 0.09 16 2 C -0.27 -4.27 6.58 24.62 0.16 -4.11 16 3 S 0.23 4.60 20.21 -56.49 -1.14 3.45 16 4 C 0.21 4.71 8.18 179.28 1.47 6.18 16 5 N -0.59 -12.60 5.39 -315.13 -1.70 -14.30 16 6 C 0.52 11.70 7.85 87.22 0.68 12.39 16 7 O -0.49 -11.99 13.93 -3.33 -0.05 -12.03 16 8 C 0.52 12.77 7.88 87.23 0.69 13.46 16 9 O -0.53 -15.33 16.47 -3.29 -0.05 -15.38 16 10 N -0.68 -16.24 5.55 -464.56 -2.58 -18.81 16 11 C 0.12 3.39 5.67 86.38 0.49 3.88 16 12 C -0.11 -3.54 5.27 30.59 0.16 -3.37 16 13 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 14 C -0.53 -29.57 9.66 25.60 0.25 -29.32 16 15 H 0.04 2.16 7.99 -2.91 -0.02 2.14 16 16 C 0.00 0.15 5.47 84.66 0.46 0.61 16 17 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 18 Si 0.95 43.23 27.47 68.60 1.88 45.11 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 22 N -0.50 -11.18 10.48 -189.74 -1.99 -13.17 16 23 C 0.07 1.32 5.31 41.48 0.22 1.54 16 24 C -0.02 -0.24 3.18 -11.54 -0.04 -0.28 16 25 C -0.14 -1.69 9.14 71.99 0.66 -1.03 16 26 C -0.14 -1.69 9.14 71.98 0.66 -1.03 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.50 6.80 -2.39 -0.02 0.48 16 29 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.44 8.51 8.29 -92.71 -0.77 7.74 16 31 H 0.42 8.95 7.94 -92.71 -0.74 8.22 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.08 7.20 -2.39 -0.02 1.07 16 37 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 39 H 0.11 0.84 6.29 -2.39 -0.02 0.83 16 40 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -69.19 389.58 0.83 -68.36 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.53 Total: 16.83 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 6.69 Total: -1.39 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -5.96 Total: -104.96 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.10 Total: -27.42 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.14 Total: 3.45 kcal Total: -69.19 0.83 -68.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515171695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.783 kcal (2) G-P(sol) polarization free energy of solvation -69.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds