Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33639 * 126.03915 * 2 1 4 4 N 1.31784 * 114.50230 * 179.97438 * 3 2 1 5 5 C 1.29023 * 117.12236 * 0.02562 * 4 3 2 6 6 C 1.50709 * 124.91372 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46610 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47201 * 60.02405 * 6 5 4 9 9 C 1.52991 * 109.46923 * 300.01708 * 6 5 4 10 10 N 1.46506 * 109.47082 * 184.99822 * 9 6 5 11 11 C 1.34777 * 120.00194 * 180.02562 * 10 9 6 12 12 O 1.21591 * 119.99802 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00243 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64412 * 359.69770 * 13 11 10 15 15 C 1.54344 * 107.26336 * 178.84826 * 14 13 11 16 16 C 1.55158 * 103.01875 * 338.13915 * 15 14 13 17 17 O 1.42898 * 111.00085 * 277.23271 * 16 15 14 18 18 C 1.50693 * 111.03819 * 153.39890 * 16 15 14 19 19 H 1.08004 * 120.00019 * 6.32203 * 18 16 15 20 20 C 1.37870 * 120.00357 * 186.33019 * 18 16 15 21 21 N 1.31517 * 120.00064 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00318 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47507 * 119.99966 * 22 20 18 25 25 H 1.48508 * 109.46906 * 239.99931 * 22 20 18 26 26 C 1.47423 * 125.65132 * 179.97438 * 13 11 10 27 27 S 1.70979 * 110.17115 * 359.97438 * 5 4 3 28 28 H 1.08995 * 109.47420 * 90.02295 * 1 2 3 29 29 H 1.09003 * 109.47602 * 210.02579 * 1 2 3 30 30 H 1.09008 * 109.47253 * 330.02693 * 1 2 3 31 31 H 1.08000 * 122.75245 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.46875 * 180.02562 * 8 6 5 33 33 H 1.09002 * 109.46671 * 299.99774 * 8 6 5 34 34 H 1.09000 * 109.47529 * 59.99367 * 8 6 5 35 35 H 1.09003 * 109.47893 * 305.00210 * 9 6 5 36 36 H 1.09007 * 109.47253 * 65.00498 * 9 6 5 37 37 H 0.96999 * 119.99505 * 0.02562 * 10 9 6 38 38 H 1.08998 * 109.88147 * 298.38772 * 14 13 11 39 39 H 1.08993 * 109.88860 * 59.56040 * 14 13 11 40 40 H 1.08994 * 110.84715 * 219.66710 * 15 14 13 41 41 H 1.09003 * 110.51467 * 96.44568 * 15 14 13 42 42 H 0.96706 * 114.00014 * 173.65114 * 17 16 15 43 43 H 0.97000 * 120.00452 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.36855 * 322.93656 * 26 13 11 45 45 H 1.08998 * 110.36381 * 85.14488 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9310 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0005 7 1 5.3558 -2.0145 0.0000 8 6 6.0729 -0.4133 1.2500 9 6 6.0732 -0.4123 -1.2484 10 7 7.4168 -0.9931 -1.3102 11 6 8.2393 -0.6818 -2.3316 12 8 7.8663 0.0815 -3.2015 13 7 9.4751 -1.2164 -2.3887 14 6 10.0537 -2.1437 -1.4054 15 6 11.4702 -2.5084 -1.8980 16 6 11.4012 -2.2032 -3.4177 17 8 10.8188 -3.2944 -4.1333 18 6 12.7649 -1.8687 -3.9648 19 1 13.6376 -1.9650 -3.3358 20 6 12.8985 -1.4396 -5.2682 21 7 11.8359 -1.3226 -6.0342 22 14 14.5889 -1.0243 -5.9462 23 1 15.6116 -1.2371 -4.8907 24 1 14.8856 -1.9009 -7.1075 25 1 14.6133 0.3961 -6.3791 26 6 10.4727 -0.9638 -3.4443 27 16 2.5435 -1.4248 0.0004 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9025 2.0875 -0.0004 32 1 7.1016 -0.7737 1.2497 33 1 6.0702 0.6767 1.2504 34 1 5.5599 -0.7782 2.1398 35 1 5.5111 -0.7017 -2.1364 36 1 6.1488 0.6742 -1.2044 37 1 7.7145 -1.6016 -0.6160 38 1 10.1113 -1.6611 -0.4298 39 1 9.4427 -3.0440 -1.3404 40 1 11.6811 -3.5638 -1.7257 41 1 12.2171 -1.8805 -1.4121 42 1 10.6654 -3.1129 -5.0707 43 1 11.9299 -1.0203 -6.9511 44 1 9.9842 -0.8764 -4.4148 45 1 11.0387 -0.0591 -3.2226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592009772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = -40.297702 kcal Electronic energy + Delta-G solvation = -26938.038600 eV Core-core repulsion = 23082.134246 eV Total energy + Delta-G solvation = -3855.904354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.18524 -39.56884 -37.54932 -36.14557 -34.19118 -33.28505 -32.20111 -31.87520 -29.98355 -27.80635 -27.34676 -26.46146 -25.00312 -24.39448 -22.61430 -21.86360 -19.70673 -19.63534 -18.93038 -18.34462 -17.50032 -16.98712 -15.99936 -15.51456 -15.44871 -15.08560 -14.91523 -14.61957 -14.46102 -14.08930 -14.01634 -13.61113 -13.32411 -13.24605 -13.05716 -12.97554 -12.78324 -12.65319 -12.04565 -12.00965 -11.64677 -11.58991 -11.50216 -11.36889 -11.24451 -11.03018 -10.78902 -10.57223 -10.44134 -10.16193 -9.83194 -9.58835 -9.50330 -9.33812 -9.04037 -8.80173 -8.67328 -8.32339 -7.65153 -6.24744 -4.34541 0.39676 1.01269 1.44029 2.55947 3.13053 3.22639 3.30853 3.34008 3.79520 3.84507 4.28148 4.47224 4.53227 4.63779 4.66200 4.76682 4.78484 5.02349 5.07152 5.10379 5.35555 5.42894 5.46576 5.52713 5.57820 5.66181 5.75366 5.78209 5.85642 5.93921 6.03283 6.08040 6.15434 6.53518 6.72865 6.76031 6.91958 7.00019 7.26896 7.35933 7.48852 7.67433 7.77441 8.06513 8.56951 8.70261 9.17543 9.32939 9.41086 10.82256 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.002101 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.984415 B =13326.187751 C =13619.793218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.228 4.228 3 C 0.035 3.965 4 N -0.462 5.462 5 C 0.058 3.942 6 C -0.024 4.024 7 H 0.095 0.905 8 C -0.139 4.139 9 C 0.156 3.844 10 N -0.751 5.751 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.628 5.628 14 C 0.105 3.895 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.114 3.886 27 S 0.121 5.879 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.392 0.608 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.381 0.619 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.084 -0.595 15.644 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.349 4.349 3 C -0.116 4.116 4 N -0.175 5.175 5 C -0.221 4.221 6 C -0.047 4.047 7 H 0.113 0.887 8 C -0.197 4.197 9 C 0.030 3.970 10 N -0.409 5.409 11 C 0.419 3.581 12 O -0.473 6.473 13 N -0.365 5.365 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.392 6.392 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.008 4.008 27 S 0.376 5.624 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.231 0.769 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.216 -0.890 15.392 24.637 hybrid contribution 0.550 1.170 -0.662 1.452 sum -18.667 0.280 14.729 23.780 Atomic orbital electron populations 1.20224 0.86762 1.03352 1.03040 1.26008 1.01666 0.95117 1.12157 1.21723 0.86846 1.00109 1.02875 1.66188 1.17628 1.18547 1.15117 1.26713 1.00075 0.91437 1.03829 1.20041 0.86625 1.00477 0.97525 0.88658 1.21808 0.99974 1.02831 0.95133 1.20987 0.81707 0.98903 0.95409 1.45060 1.15203 1.52777 1.27855 1.15467 0.79785 0.80902 0.81949 1.90898 1.75434 1.40487 1.40530 1.47928 1.12807 1.47762 1.28021 1.21929 0.96322 0.92275 0.91320 1.22589 0.93716 1.01460 0.97600 1.19636 0.90202 0.82501 0.86946 1.86097 1.84752 1.41536 1.26765 1.21486 0.92725 1.45857 0.97475 0.91497 1.25089 0.97441 0.93919 0.96851 1.69731 1.28625 1.46329 1.08287 0.86360 0.83581 0.78061 0.78944 1.19605 1.20795 1.20796 1.23122 0.87968 0.99951 0.89752 1.84014 0.98659 1.11347 1.68335 0.90463 0.91131 0.90215 0.80845 0.91309 0.91085 0.92304 0.91817 0.90596 0.77368 0.93144 0.92709 0.90798 0.90444 0.76917 0.92064 0.89677 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.00 0.38 -0.01 16 2 C -0.23 -1.91 6.60 -35.92 -0.24 -2.15 16 3 C 0.04 0.34 11.25 -19.18 -0.22 0.13 16 4 N -0.46 -5.51 10.53 -11.86 -0.12 -5.63 16 5 C 0.06 0.62 5.91 -13.45 -0.08 0.54 16 6 C -0.02 -0.24 2.86 -91.77 -0.26 -0.50 16 7 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 8 C -0.14 -1.24 9.04 37.16 0.34 -0.91 16 9 C 0.16 2.15 5.04 -4.04 -0.02 2.13 16 10 N -0.75 -11.35 5.24 -65.22 -0.34 -11.70 16 11 C 0.72 14.85 8.49 -86.92 -0.74 14.12 16 12 O -0.59 -14.88 16.60 5.29 0.09 -14.80 16 13 N -0.63 -13.11 3.33 -176.24 -0.59 -13.69 16 14 C 0.11 1.80 6.15 -3.05 -0.02 1.78 16 15 C -0.12 -2.26 6.13 -24.88 -0.15 -2.41 16 16 C 0.25 5.98 0.87 -89.64 -0.08 5.90 16 17 O -0.58 -14.83 13.16 -35.23 -0.46 -15.29 16 18 C -0.54 -13.96 8.27 -34.45 -0.28 -14.24 16 19 H 0.07 1.70 7.79 -52.48 -0.41 1.30 16 20 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 21 N -0.89 -24.00 10.69 55.43 0.59 -23.40 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.11 2.78 5.38 -2.54 -0.01 2.77 16 27 S 0.12 1.06 23.17 -107.50 -2.49 -1.43 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 31 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.07 0.57 7.18 -51.93 -0.37 0.19 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.39 4.78 6.64 -40.82 -0.27 4.51 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.38 10.01 7.56 45.56 0.34 10.35 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 45 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -32.05 383.74 -10.18 -42.23 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.13 Total: 13.61 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.48 Total: 8.89 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.46 Total: -54.42 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.38 Total: -30.09 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.05 -10.18 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592009772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.934 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds