Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33639 * 126.03915 * 2 1 4 4 N 1.31784 * 114.50230 * 179.97438 * 3 2 1 5 5 C 1.29023 * 117.12236 * 0.02562 * 4 3 2 6 6 C 1.50709 * 124.91372 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46610 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47201 * 60.02405 * 6 5 4 9 9 C 1.52991 * 109.46923 * 300.01708 * 6 5 4 10 10 N 1.46506 * 109.47082 * 184.99822 * 9 6 5 11 11 C 1.34777 * 120.00194 * 180.02562 * 10 9 6 12 12 O 1.21591 * 119.99802 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00243 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64412 * 359.69770 * 13 11 10 15 15 C 1.54344 * 107.26336 * 178.84826 * 14 13 11 16 16 C 1.55158 * 103.01875 * 338.13915 * 15 14 13 17 17 O 1.42898 * 111.00085 * 277.23271 * 16 15 14 18 18 C 1.50693 * 111.03819 * 153.39890 * 16 15 14 19 19 H 1.08004 * 120.00019 * 6.32203 * 18 16 15 20 20 C 1.37870 * 120.00357 * 186.33019 * 18 16 15 21 21 N 1.31517 * 120.00064 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00318 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47507 * 119.99966 * 22 20 18 25 25 H 1.48508 * 109.46906 * 239.99931 * 22 20 18 26 26 C 1.47423 * 125.65132 * 179.97438 * 13 11 10 27 27 S 1.70979 * 110.17115 * 359.97438 * 5 4 3 28 28 H 1.08995 * 109.47420 * 90.02295 * 1 2 3 29 29 H 1.09003 * 109.47602 * 210.02579 * 1 2 3 30 30 H 1.09008 * 109.47253 * 330.02693 * 1 2 3 31 31 H 1.08000 * 122.75245 * 359.97438 * 3 2 1 32 32 H 1.08997 * 109.46875 * 180.02562 * 8 6 5 33 33 H 1.09002 * 109.46671 * 299.99774 * 8 6 5 34 34 H 1.09000 * 109.47529 * 59.99367 * 8 6 5 35 35 H 1.09003 * 109.47893 * 305.00210 * 9 6 5 36 36 H 1.09007 * 109.47253 * 65.00498 * 9 6 5 37 37 H 0.96999 * 119.99505 * 0.02562 * 10 9 6 38 38 H 1.08998 * 109.88147 * 298.38772 * 14 13 11 39 39 H 1.08993 * 109.88860 * 59.56040 * 14 13 11 40 40 H 1.08994 * 110.84715 * 219.66710 * 15 14 13 41 41 H 1.09003 * 110.51467 * 96.44568 * 15 14 13 42 42 H 0.96706 * 114.00014 * 173.65114 * 17 16 15 43 43 H 0.97000 * 120.00452 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.36855 * 322.93656 * 26 13 11 45 45 H 1.08998 * 110.36381 * 85.14488 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9310 -0.4257 0.0005 6 6 5.3532 -0.9245 0.0005 7 1 5.3558 -2.0145 0.0000 8 6 6.0729 -0.4133 1.2500 9 6 6.0732 -0.4123 -1.2484 10 7 7.4168 -0.9931 -1.3102 11 6 8.2393 -0.6818 -2.3316 12 8 7.8663 0.0815 -3.2015 13 7 9.4751 -1.2164 -2.3887 14 6 10.0537 -2.1437 -1.4054 15 6 11.4702 -2.5084 -1.8980 16 6 11.4012 -2.2032 -3.4177 17 8 10.8188 -3.2944 -4.1333 18 6 12.7649 -1.8687 -3.9648 19 1 13.6376 -1.9650 -3.3358 20 6 12.8985 -1.4396 -5.2682 21 7 11.8359 -1.3226 -6.0342 22 14 14.5889 -1.0243 -5.9462 23 1 15.6116 -1.2371 -4.8907 24 1 14.8856 -1.9009 -7.1075 25 1 14.6133 0.3961 -6.3791 26 6 10.4727 -0.9638 -3.4443 27 16 2.5435 -1.4248 0.0004 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5134 31 1 1.9025 2.0875 -0.0004 32 1 7.1016 -0.7737 1.2497 33 1 6.0702 0.6767 1.2504 34 1 5.5599 -0.7782 2.1398 35 1 5.5111 -0.7017 -2.1364 36 1 6.1488 0.6742 -1.2044 37 1 7.7145 -1.6016 -0.6160 38 1 10.1113 -1.6611 -0.4298 39 1 9.4427 -3.0440 -1.3404 40 1 11.6811 -3.5638 -1.7257 41 1 12.2171 -1.8805 -1.4121 42 1 10.6654 -3.1129 -5.0707 43 1 11.9299 -1.0203 -6.9511 44 1 9.9842 -0.8764 -4.4148 45 1 11.0387 -0.0591 -3.2226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592009772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -63.723226 kcal Electronic energy + Delta-G solvation = -26939.054407 eV Core-core repulsion = 23082.134246 eV Total energy + Delta-G solvation = -3856.920161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34130 -40.77764 -39.19426 -37.32753 -36.02402 -34.34604 -34.21637 -32.72593 -31.59538 -29.54465 -28.03216 -27.76052 -26.44562 -25.37689 -24.11010 -22.76557 -21.45527 -21.14951 -19.84531 -19.22771 -19.08138 -18.68287 -17.37299 -16.97490 -16.90022 -16.37890 -16.14344 -15.94607 -15.76643 -15.34231 -14.96372 -14.82024 -14.69462 -14.56191 -14.06609 -13.96516 -13.72543 -13.68033 -13.53121 -13.50479 -13.23894 -12.85973 -12.75209 -12.51789 -12.38842 -12.31968 -12.20029 -12.17646 -12.06045 -12.03935 -11.36596 -11.17475 -10.66281 -10.57798 -10.31842 -10.23222 -10.18005 -9.72822 -9.31748 -8.23215 -6.40399 -0.31429 0.33258 0.73298 1.41201 1.44693 1.55518 1.63619 1.86193 2.15140 2.39163 2.98430 3.03287 3.22745 3.70657 3.81772 3.83144 3.94941 4.05608 4.11389 4.21595 4.26871 4.34472 4.37734 4.63249 4.65904 4.70586 4.71692 4.79114 4.85424 4.88736 4.97520 5.04735 5.09981 5.12944 5.22044 5.31968 5.34713 5.38907 5.44884 5.49064 5.77876 6.06664 6.18997 6.67600 6.77473 7.07119 7.29093 7.36443 7.57136 8.82006 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.002101 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.984415 B =13326.187751 C =13619.793218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.220 4.220 3 C 0.010 3.990 4 N -0.492 5.492 5 C 0.032 3.968 6 C -0.014 4.014 7 H 0.120 0.880 8 C -0.134 4.134 9 C 0.161 3.839 10 N -0.724 5.724 11 C 0.711 3.289 12 O -0.647 6.647 13 N -0.633 5.633 14 C 0.105 3.895 15 C -0.110 4.110 16 C 0.231 3.769 17 O -0.587 6.587 18 C -0.553 4.553 19 H 0.070 0.930 20 C 0.023 3.977 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.284 1.284 26 C 0.128 3.872 27 S 0.148 5.852 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.188 0.812 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.372 0.628 43 H 0.268 0.732 44 H 0.041 0.959 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.721 -1.911 18.155 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.341 4.341 3 C -0.140 4.140 4 N -0.206 5.206 5 C -0.246 4.246 6 C -0.036 4.036 7 H 0.138 0.862 8 C -0.193 4.193 9 C 0.035 3.965 10 N -0.382 5.382 11 C 0.412 3.588 12 O -0.530 6.530 13 N -0.369 5.369 14 C -0.016 4.016 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.592 4.592 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.210 1.210 26 C 0.005 3.995 27 S 0.404 5.596 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.205 0.795 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.249 0.751 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.220 0.780 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.856 -2.251 17.986 26.885 hybrid contribution 0.642 1.588 -1.445 2.241 sum -19.214 -0.663 16.541 25.362 Atomic orbital electron populations 1.20383 0.84446 1.04734 1.03938 1.26468 1.03178 0.94530 1.09973 1.22020 0.86506 1.01365 1.04133 1.66175 1.19048 1.19626 1.15722 1.26776 1.00913 0.91771 1.05117 1.19993 0.86209 1.01668 0.95751 0.86226 1.21784 1.00686 1.01642 0.95196 1.20964 0.80891 0.97665 0.96964 1.44780 1.14803 1.52128 1.26506 1.15707 0.80089 0.80497 0.82468 1.90859 1.76491 1.42812 1.42834 1.47856 1.12543 1.48468 1.28044 1.22168 0.94917 0.92771 0.91785 1.22597 0.95697 1.02657 0.93835 1.19876 0.89187 0.82123 0.89721 1.86088 1.84895 1.42183 1.26231 1.21837 0.93768 1.45738 0.97824 0.91156 1.25857 1.00613 0.93920 0.97343 1.69861 1.30339 1.46978 1.08361 0.85411 0.79853 0.77422 0.78353 1.18575 1.20645 1.21049 1.22652 0.88375 0.99619 0.88901 1.83839 0.97512 1.10767 1.67527 0.89648 0.89951 0.88640 0.79486 0.90187 0.92983 0.90582 0.93571 0.92895 0.75077 0.88902 0.90519 0.89448 0.89298 0.77952 0.92275 0.94016 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.42 71.23 0.74 0.14 16 2 C -0.22 -3.33 6.60 24.64 0.16 -3.17 16 3 C 0.01 0.18 11.25 83.66 0.94 1.13 16 4 N -0.49 -11.67 10.53 -191.44 -2.02 -13.68 16 5 C 0.03 0.65 5.91 88.52 0.52 1.18 16 6 C -0.01 -0.26 2.86 -11.54 -0.03 -0.29 16 7 H 0.12 1.64 8.12 -2.39 -0.02 1.62 16 8 C -0.13 -2.15 9.04 71.98 0.65 -1.50 16 9 C 0.16 4.43 5.04 86.38 0.44 4.86 16 10 N -0.72 -21.06 5.24 -478.52 -2.51 -23.56 16 11 C 0.71 29.62 8.49 179.06 1.52 31.14 16 12 O -0.65 -33.78 16.60 -4.00 -0.07 -33.85 16 13 N -0.63 -26.14 3.33 -829.77 -2.76 -28.90 16 14 C 0.11 3.29 6.15 86.74 0.53 3.82 16 15 C -0.11 -4.04 6.13 31.79 0.19 -3.85 16 16 C 0.23 11.17 0.87 -10.16 -0.01 11.17 16 17 O -0.59 -30.13 13.16 -148.98 -1.96 -32.09 16 18 C -0.55 -28.83 8.27 25.60 0.21 -28.62 16 19 H 0.07 3.53 7.79 -2.91 -0.02 3.50 16 20 C 0.02 1.24 5.29 84.65 0.45 1.69 16 21 N -0.92 -50.94 10.69 21.45 0.23 -50.71 16 22 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.13 6.45 5.38 86.85 0.47 6.91 16 27 S 0.15 2.33 23.17 -56.49 -1.31 1.02 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.08 1.07 7.18 -2.39 -0.02 1.05 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.41 8.78 6.64 -92.71 -0.62 8.16 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 42 H 0.37 20.25 7.56 -74.05 -0.56 19.69 16 43 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.04 2.43 7.33 -2.38 -0.02 2.42 16 45 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -73.16 383.74 -1.73 -74.89 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.16 Total: 38.00 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: 6.79 Total: 24.61 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -7.05 Total: -116.85 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -2.03 Total: -65.93 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.31 Total: 1.02 kcal Total: -73.16 -1.73 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592009772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.170 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds