Wall clock time and date at job start Sat Apr 11 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.76177 * 125.97174 * 2 1 4 4 C 1.70967 * 90.33880 * 179.97438 * 3 2 1 5 5 N 1.38747 * 124.94485 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00077 * 0.02769 * 5 4 3 7 7 O 1.21385 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.49306 * 120.00239 * 180.02562 * 6 5 4 9 9 O 1.21367 * 119.99871 * 354.16369 * 8 6 5 10 10 N 1.34775 * 120.00342 * 174.16378 * 8 6 5 11 11 C 1.46500 * 119.99962 * 3.62964 * 10 8 6 12 12 C 1.46500 * 120.00339 * 183.63297 * 10 8 6 13 13 H 1.08996 * 109.46994 * 359.97438 * 12 10 8 14 14 C 1.52994 * 109.47280 * 119.99886 * 12 10 8 15 15 C 1.50701 * 109.46900 * 240.00138 * 12 10 8 16 16 H 1.08003 * 120.00104 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99738 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00334 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99979 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47089 * 119.99753 * 19 17 15 22 22 H 1.48498 * 109.46946 * 239.99909 * 19 17 15 23 23 N 1.29685 * 110.11461 * 359.97438 * 4 3 2 24 24 C 1.31912 * 116.92253 * 359.75639 * 23 4 3 25 25 C 1.50700 * 122.71762 * 180.26066 * 24 23 4 26 26 C 1.52998 * 109.46953 * 300.19893 * 25 24 23 27 27 C 1.53003 * 109.46902 * 60.19987 * 25 24 23 28 28 H 1.09006 * 109.46878 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47166 * 240.02328 * 1 2 3 30 30 H 1.08995 * 109.46727 * 120.02067 * 1 2 3 31 31 H 0.97003 * 120.00200 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47214 * 83.98638 * 11 10 8 33 33 H 1.08991 * 109.47521 * 203.99402 * 11 10 8 34 34 H 1.09006 * 109.46812 * 323.99376 * 11 10 8 35 35 H 1.08998 * 109.47541 * 180.02562 * 14 12 10 36 36 H 1.09003 * 109.47049 * 300.00112 * 14 12 10 37 37 H 1.08996 * 109.47116 * 60.00064 * 14 12 10 38 38 H 0.97002 * 120.00262 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47441 * 180.19791 * 25 24 23 40 40 H 1.08999 * 109.47132 * 60.00486 * 26 25 24 41 41 H 1.09003 * 109.46976 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.47552 * 299.99651 * 26 25 24 43 43 H 1.09003 * 109.46854 * 179.97438 * 27 25 24 44 44 H 1.09001 * 109.46913 * 300.00127 * 27 25 24 45 45 H 1.09001 * 109.46954 * 60.00232 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5418 1.4258 0.0000 4 6 3.9314 0.4298 0.0008 5 7 5.2399 0.8911 0.0016 6 6 5.4873 2.2160 0.0025 7 8 4.5654 3.0056 0.0020 8 6 6.8954 2.7125 0.0028 9 8 7.8154 1.9281 0.1092 10 7 7.1449 4.0317 -0.1150 11 6 6.0342 4.9858 -0.1634 12 6 8.5267 4.5117 -0.1948 13 1 9.2095 3.6637 -0.1427 14 6 8.7336 5.2531 -1.5170 15 6 8.8004 5.4477 0.9542 16 1 8.0227 5.6638 1.6718 17 6 10.0434 6.0290 1.0887 18 7 10.9903 5.7664 0.2146 19 14 10.3825 7.1898 2.5125 20 1 9.1615 7.3185 3.3478 21 1 11.4928 6.6498 3.3377 22 1 10.7627 8.5242 1.9834 23 7 3.5844 -0.8198 0.0015 24 6 2.2914 -1.0806 0.0065 25 6 1.7436 -2.4845 0.0138 26 6 2.2304 -3.2283 -1.2315 27 6 2.2301 -3.2152 1.2670 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5135 0.8902 30 1 -0.3632 -0.5141 -0.8898 31 1 5.9767 0.2602 0.0016 32 1 5.7176 5.2267 0.8514 33 1 6.3584 5.8956 -0.6685 34 1 5.2000 4.5448 -0.7092 35 1 9.7618 5.6099 -1.5766 36 1 8.5356 4.5761 -2.3480 37 1 8.0509 6.1012 -1.5687 38 1 11.8649 6.1751 0.3094 39 1 0.6542 -2.4496 0.0135 40 1 3.3198 -3.2633 -1.2311 41 1 1.8338 -4.2436 -1.2265 42 1 1.8839 -2.7077 -2.1243 43 1 1.8335 -4.2306 1.2724 44 1 3.3195 -3.2502 1.2673 45 1 1.8832 -2.6853 2.1541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595012459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:06 Heat of formation + Delta-G solvation = -18.277514 kcal Electronic energy + Delta-G solvation = -27119.672004 eV Core-core repulsion = 23264.722517 eV Total energy + Delta-G solvation = -3854.949487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00551 -40.08894 -38.40782 -36.32454 -35.48125 -34.11910 -32.85882 -32.14433 -29.65280 -27.30923 -27.29503 -26.33695 -25.38761 -25.00168 -23.78099 -22.12640 -21.32562 -20.04323 -18.62422 -18.02699 -17.04400 -17.00830 -16.50747 -16.10680 -16.02829 -15.27204 -15.02695 -14.99410 -14.52975 -14.25797 -13.94717 -13.42764 -13.33106 -13.20845 -13.03796 -12.78540 -12.71966 -12.57756 -12.38606 -12.30601 -11.98171 -11.66746 -11.45007 -11.16620 -11.08294 -11.05356 -10.91070 -10.86428 -10.71160 -10.55471 -10.31634 -10.25241 -9.76760 -9.31735 -9.16423 -9.05250 -8.54248 -8.23455 -7.86961 -6.17886 -4.26461 0.55447 1.04221 1.56710 1.74613 2.23118 2.73403 3.21569 3.29838 3.33194 3.45916 3.74283 4.29287 4.33303 4.57522 4.64655 4.81840 4.98188 5.03127 5.12318 5.14339 5.30933 5.42482 5.47405 5.54058 5.67092 5.69676 5.72138 5.84226 5.91023 6.06799 6.08359 6.15229 6.20021 6.43729 6.53530 6.64298 6.67473 6.87323 7.09306 7.24093 7.50870 7.58410 7.70859 7.85496 7.98942 8.21558 8.41756 8.77902 9.40201 10.87648 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.002444 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.875027 B =11455.532391 C =11770.589744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.288 4.288 3 S 0.241 5.759 4 C 0.243 3.757 5 N -0.601 5.601 6 C 0.508 3.492 7 O -0.484 6.484 8 C 0.501 3.499 9 O -0.527 6.527 10 N -0.546 5.546 11 C 0.069 3.931 12 C 0.254 3.746 13 H 0.068 0.932 14 C -0.148 4.148 15 C -0.528 4.528 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.902 3.098 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.501 5.501 24 C 0.094 3.906 25 C -0.018 4.018 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.434 0.566 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.014 0.986 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.387 -12.036 -2.342 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.410 4.410 3 S 0.493 5.507 4 C -0.124 4.124 5 N -0.252 5.252 6 C 0.290 3.710 7 O -0.357 6.357 8 C 0.280 3.720 9 O -0.406 6.406 10 N -0.276 5.276 11 C -0.074 4.074 12 C 0.155 3.845 13 H 0.086 0.914 14 C -0.207 4.207 15 C -0.567 4.567 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 N -0.224 5.224 24 C -0.039 4.039 25 C -0.039 4.039 26 C -0.198 4.198 27 C -0.199 4.199 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.275 0.725 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.935 -10.998 -2.337 22.887 hybrid contribution 0.472 -0.461 0.803 1.039 sum -19.463 -11.459 -1.534 22.637 Atomic orbital electron populations 1.20088 0.87153 1.02682 1.02499 1.26178 1.02062 0.97261 1.15541 1.84885 0.92731 1.05048 1.68052 1.23219 0.91806 0.93045 1.04343 1.42591 1.05004 1.08527 1.69092 1.21373 0.92418 0.81022 0.76193 1.90601 1.46062 1.52963 1.46072 1.19144 0.86550 0.84716 0.81575 1.90768 1.44459 1.54879 1.50445 1.48308 1.10926 1.03628 1.64740 1.22188 0.89026 0.93737 1.02404 1.19248 0.74860 0.95756 0.94633 0.91407 1.22126 1.04591 0.98517 0.95448 1.21291 0.98026 1.27247 1.10106 0.91903 1.24885 0.95740 0.96550 0.96487 1.69874 1.03749 1.43615 1.35204 0.86379 0.78405 0.80310 0.81980 1.19710 1.20813 1.20819 1.66037 1.18386 1.16301 1.21640 1.19587 0.86069 0.96445 1.01764 1.19739 0.99266 0.88216 0.96655 1.21770 1.02381 0.99270 0.96416 1.21774 1.02388 0.99341 0.96360 0.91482 0.90871 0.90870 0.72476 0.92624 0.90738 0.89502 0.88307 0.96694 0.94624 0.92541 0.89800 0.91715 0.92377 0.92915 0.92366 0.91713 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 9.22 36.01 0.33 -0.15 16 2 C -0.29 -3.16 6.58 -35.96 -0.24 -3.40 16 3 S 0.24 3.08 20.21 -107.50 -2.17 0.90 16 4 C 0.24 3.49 8.18 -87.55 -0.72 2.77 16 5 N -0.60 -8.95 5.39 -13.55 -0.07 -9.03 16 6 C 0.51 8.43 7.73 -11.65 -0.09 8.34 16 7 O -0.48 -7.91 10.59 5.47 0.06 -7.86 16 8 C 0.50 10.00 7.73 -11.65 -0.09 9.91 16 9 O -0.53 -11.77 15.82 5.48 0.09 -11.68 16 10 N -0.55 -11.45 2.75 -175.83 -0.48 -11.93 16 11 C 0.07 1.23 8.76 59.85 0.52 1.75 16 12 C 0.25 6.23 2.62 -69.08 -0.18 6.05 16 13 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 14 C -0.15 -3.39 8.96 37.15 0.33 -3.05 16 15 C -0.53 -13.87 8.37 -34.44 -0.29 -14.15 16 16 H 0.06 1.65 7.65 -52.48 -0.40 1.24 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -24.24 11.32 55.43 0.63 -23.61 16 19 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 N -0.50 -6.98 10.48 -11.33 -0.12 -7.09 16 24 C 0.09 1.11 5.31 -84.21 -0.45 0.67 16 25 C -0.02 -0.16 3.20 -91.77 -0.29 -0.45 16 26 C -0.14 -1.22 9.14 37.16 0.34 -0.88 16 27 C -0.14 -1.24 9.14 37.16 0.34 -0.90 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.43 6.14 8.30 -40.82 -0.34 5.80 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.30 6.44 -51.93 -0.33 0.96 16 34 H 0.09 1.40 5.35 -51.93 -0.28 1.12 16 35 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 38 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.08 0.61 7.01 -51.93 -0.36 0.25 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -29.14 379.91 -8.46 -37.60 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.52 Total: 3.23 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -0.57 Total: 8.15 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.05 Total: -51.66 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.14 Total: -19.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.17 Total: 0.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.14 -8.46 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595012459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.323 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds