Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.76177 * 125.97174 * 2 1 4 4 C 1.70967 * 90.33880 * 179.97438 * 3 2 1 5 5 N 1.38747 * 124.94485 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00077 * 0.02769 * 5 4 3 7 7 O 1.21385 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.49306 * 120.00239 * 180.02562 * 6 5 4 9 9 O 1.21367 * 119.99871 * 354.16369 * 8 6 5 10 10 N 1.34775 * 120.00342 * 174.16378 * 8 6 5 11 11 C 1.46500 * 119.99962 * 3.62964 * 10 8 6 12 12 C 1.46500 * 120.00339 * 183.63297 * 10 8 6 13 13 H 1.08996 * 109.46994 * 359.97438 * 12 10 8 14 14 C 1.52994 * 109.47280 * 119.99886 * 12 10 8 15 15 C 1.50701 * 109.46900 * 240.00138 * 12 10 8 16 16 H 1.08003 * 120.00104 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99738 * 180.02562 * 15 12 10 18 18 N 1.31514 * 120.00334 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99979 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46867 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47089 * 119.99753 * 19 17 15 22 22 H 1.48498 * 109.46946 * 239.99909 * 19 17 15 23 23 N 1.29685 * 110.11461 * 359.97438 * 4 3 2 24 24 C 1.31912 * 116.92253 * 359.75639 * 23 4 3 25 25 C 1.50700 * 122.71762 * 180.26066 * 24 23 4 26 26 C 1.52998 * 109.46953 * 300.19893 * 25 24 23 27 27 C 1.53003 * 109.46902 * 60.19987 * 25 24 23 28 28 H 1.09006 * 109.46878 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47166 * 240.02328 * 1 2 3 30 30 H 1.08995 * 109.46727 * 120.02067 * 1 2 3 31 31 H 0.97003 * 120.00200 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47214 * 83.98638 * 11 10 8 33 33 H 1.08991 * 109.47521 * 203.99402 * 11 10 8 34 34 H 1.09006 * 109.46812 * 323.99376 * 11 10 8 35 35 H 1.08998 * 109.47541 * 180.02562 * 14 12 10 36 36 H 1.09003 * 109.47049 * 300.00112 * 14 12 10 37 37 H 1.08996 * 109.47116 * 60.00064 * 14 12 10 38 38 H 0.97002 * 120.00262 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47441 * 180.19791 * 25 24 23 40 40 H 1.08999 * 109.47132 * 60.00486 * 26 25 24 41 41 H 1.09003 * 109.46976 * 180.02562 * 26 25 24 42 42 H 1.08997 * 109.47552 * 299.99651 * 26 25 24 43 43 H 1.09003 * 109.46854 * 179.97438 * 27 25 24 44 44 H 1.09001 * 109.46913 * 300.00127 * 27 25 24 45 45 H 1.09001 * 109.46954 * 60.00232 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5418 1.4258 0.0000 4 6 3.9314 0.4298 0.0008 5 7 5.2399 0.8911 0.0016 6 6 5.4873 2.2160 0.0025 7 8 4.5654 3.0056 0.0020 8 6 6.8954 2.7125 0.0028 9 8 7.8154 1.9281 0.1092 10 7 7.1449 4.0317 -0.1150 11 6 6.0342 4.9858 -0.1634 12 6 8.5267 4.5117 -0.1948 13 1 9.2095 3.6637 -0.1427 14 6 8.7336 5.2531 -1.5170 15 6 8.8004 5.4477 0.9542 16 1 8.0227 5.6638 1.6718 17 6 10.0434 6.0290 1.0887 18 7 10.9903 5.7664 0.2146 19 14 10.3825 7.1898 2.5125 20 1 9.1615 7.3185 3.3478 21 1 11.4928 6.6498 3.3377 22 1 10.7627 8.5242 1.9834 23 7 3.5844 -0.8198 0.0015 24 6 2.2914 -1.0806 0.0065 25 6 1.7436 -2.4845 0.0138 26 6 2.2304 -3.2283 -1.2315 27 6 2.2301 -3.2152 1.2670 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5135 0.8902 30 1 -0.3632 -0.5141 -0.8898 31 1 5.9767 0.2602 0.0016 32 1 5.7176 5.2267 0.8514 33 1 6.3584 5.8956 -0.6685 34 1 5.2000 4.5448 -0.7092 35 1 9.7618 5.6099 -1.5766 36 1 8.5356 4.5761 -2.3480 37 1 8.0509 6.1012 -1.5687 38 1 11.8649 6.1751 0.3094 39 1 0.6542 -2.4496 0.0135 40 1 3.3198 -3.2633 -1.2311 41 1 1.8338 -4.2436 -1.2265 42 1 1.8839 -2.7077 -2.1243 43 1 1.8335 -4.2306 1.2724 44 1 3.3195 -3.2502 1.2673 45 1 1.8832 -2.6853 2.1541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595012459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = -35.297322 kcal Electronic energy + Delta-G solvation = -27120.410038 eV Core-core repulsion = 23264.722517 eV Total energy + Delta-G solvation = -3855.687521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34280 -41.12876 -39.91864 -37.77422 -36.78963 -35.16762 -34.68669 -32.93587 -31.51882 -28.42864 -27.98439 -27.73784 -27.33297 -26.24537 -24.83434 -23.31954 -22.50275 -21.50024 -19.92039 -19.17906 -18.60100 -18.15897 -18.11750 -17.55214 -17.46367 -16.79697 -16.27622 -16.14085 -15.84787 -15.27190 -15.03993 -14.97438 -14.53848 -14.22320 -14.11987 -13.94564 -13.80015 -13.68123 -13.56274 -13.48301 -13.03075 -13.00546 -12.86765 -12.78114 -12.70889 -12.45139 -12.22853 -12.19315 -12.10806 -11.77121 -11.71953 -11.53909 -11.23807 -10.77962 -10.60528 -10.48057 -10.15060 -9.61816 -9.17497 -8.19084 -6.35260 -0.54097 0.03721 0.27018 0.72049 0.99895 1.40876 1.43356 1.54192 1.67275 2.02616 2.28927 2.43855 3.06210 3.10725 3.40658 3.92398 4.05797 4.28195 4.29615 4.35184 4.42886 4.54259 4.70122 4.74724 4.77717 4.80430 4.84207 4.85376 4.96346 4.98523 5.00338 5.01624 5.08751 5.18869 5.27489 5.33891 5.35153 5.38250 5.42142 5.55550 5.59991 5.89632 6.06477 6.18778 6.46435 6.66305 6.72462 6.86075 7.35412 8.85749 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.002444 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.875027 B =11455.532391 C =11770.589744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.267 4.267 3 S 0.237 5.763 4 C 0.210 3.790 5 N -0.594 5.594 6 C 0.521 3.479 7 O -0.482 6.482 8 C 0.497 3.503 9 O -0.559 6.559 10 N -0.555 5.555 11 C 0.073 3.927 12 C 0.258 3.742 13 H 0.025 0.975 14 C -0.136 4.136 15 C -0.541 4.541 16 H 0.060 0.940 17 C 0.021 3.979 18 N -0.913 5.913 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.509 5.509 24 C 0.071 3.929 25 C -0.017 4.017 26 C -0.138 4.138 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.435 0.565 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.267 0.733 39 H 0.111 0.889 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.557 -12.327 -2.040 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.389 4.389 3 S 0.489 5.511 4 C -0.155 4.155 5 N -0.244 5.244 6 C 0.302 3.698 7 O -0.356 6.356 8 C 0.278 3.722 9 O -0.439 6.439 10 N -0.285 5.285 11 C -0.069 4.069 12 C 0.157 3.843 13 H 0.043 0.957 14 C -0.194 4.194 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.199 1.199 23 N -0.232 5.232 24 C -0.061 4.061 25 C -0.038 4.038 26 C -0.195 4.195 27 C -0.196 4.196 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.276 0.724 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.148 -11.307 -2.041 25.843 hybrid contribution 1.335 -0.508 0.700 1.590 sum -21.814 -11.815 -1.341 24.844 Atomic orbital electron populations 1.20315 0.84244 1.03957 1.04273 1.26655 1.03705 0.95722 1.12792 1.84789 0.92549 1.06124 1.67684 1.23291 0.91528 0.93762 1.06941 1.42329 1.05776 1.07719 1.68617 1.20366 0.90550 0.81747 0.77111 1.90594 1.45329 1.53145 1.46493 1.19635 0.87952 0.84187 0.80456 1.90742 1.46056 1.55603 1.51494 1.48250 1.10443 1.04690 1.65074 1.22318 0.88373 0.93299 1.02877 1.18887 0.76249 0.93975 0.95156 0.95707 1.21926 1.03453 0.99009 0.95019 1.21515 0.98234 1.27571 1.10661 0.92198 1.25661 0.95560 0.97997 0.98764 1.69995 1.04081 1.44455 1.36608 0.85410 0.78086 0.78549 0.79002 1.19215 1.20973 1.19876 1.66026 1.19946 1.16353 1.20834 1.20104 0.85369 0.98142 1.02471 1.19898 1.00629 0.86530 0.96717 1.21745 1.00975 1.00546 0.96266 1.21751 1.00964 1.00637 0.96229 0.90565 0.88985 0.88899 0.72450 0.92444 0.90432 0.87613 0.90648 0.95451 0.93109 0.92396 0.87117 0.93955 0.90215 0.92997 0.90184 0.93980 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 9.22 71.24 0.66 -0.09 16 2 C -0.27 -5.18 6.58 24.62 0.16 -5.02 16 3 S 0.24 5.72 20.21 -56.49 -1.14 4.58 16 4 C 0.21 5.99 8.18 179.27 1.47 7.45 16 5 N -0.59 -17.97 5.39 -315.13 -1.70 -19.67 16 6 C 0.52 17.39 7.73 87.22 0.67 18.07 16 7 O -0.48 -15.42 10.59 -3.36 -0.04 -15.45 16 8 C 0.50 20.36 7.73 87.22 0.67 21.03 16 9 O -0.56 -26.09 15.82 -3.30 -0.05 -26.15 16 10 N -0.55 -23.61 2.75 -828.56 -2.28 -25.89 16 11 C 0.07 2.53 8.76 127.77 1.12 3.65 16 12 C 0.26 13.00 2.62 44.24 0.12 13.12 16 13 H 0.02 1.46 6.90 -2.39 -0.02 1.45 16 14 C -0.14 -6.28 8.96 71.98 0.64 -5.63 16 15 C -0.54 -28.84 8.37 25.60 0.21 -28.62 16 16 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 17 C 0.02 1.09 5.30 84.65 0.45 1.54 16 18 N -0.91 -50.89 11.32 21.45 0.24 -50.65 16 19 Si 0.96 42.36 29.54 68.60 2.03 44.38 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 N -0.51 -13.94 10.48 -189.74 -1.99 -15.93 16 24 C 0.07 1.55 5.31 41.48 0.22 1.77 16 25 C -0.02 -0.26 3.20 -11.54 -0.04 -0.30 16 26 C -0.14 -2.12 9.14 71.98 0.66 -1.46 16 27 C -0.14 -2.16 9.14 71.98 0.66 -1.51 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.43 12.80 8.30 -92.71 -0.77 12.03 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.62 6.44 -2.39 -0.02 2.60 16 34 H 0.11 3.27 5.35 -2.51 -0.01 3.26 16 35 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 2.14 6.67 -2.39 -0.02 2.12 16 38 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.11 1.15 7.01 -2.39 -0.02 1.13 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -64.12 379.91 3.00 -61.11 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.25 Total: 19.65 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 7.68 Total: 24.00 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.72 Total: -112.13 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.09 Total: -41.60 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.14 Total: 4.58 kcal Total: -64.12 3.00 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595012459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.817 kcal (2) G-P(sol) polarization free energy of solvation -64.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds