Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47062 * 96.11566 * 3 2 1 5 5 C 1.35713 * 117.00131 * 179.97438 * 4 3 2 6 6 C 1.38992 * 119.91265 * 179.97438 * 5 4 3 7 7 C 1.37709 * 120.08965 * 180.02562 * 6 5 4 8 8 C 1.39736 * 119.90665 * 359.97438 * 7 6 5 9 9 C 1.47584 * 120.08693 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00036 * 180.02562 * 9 8 7 12 12 C 1.40093 * 120.00017 * 180.02562 * 11 9 8 13 13 C 1.40424 * 125.97441 * 0.27907 * 12 11 9 14 14 C 1.35232 * 107.86568 * 180.16338 * 13 12 11 15 15 C 1.50703 * 126.06766 * 179.84878 * 14 13 12 16 16 N 1.34973 * 107.86541 * 359.58490 * 14 13 12 17 17 C 1.46498 * 125.97410 * 180.22663 * 16 14 13 18 18 C 1.50702 * 109.47036 * 90.00121 * 17 16 14 19 19 H 1.08000 * 120.00135 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00214 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99653 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47202 * 90.00246 * 22 20 18 24 24 H 1.48501 * 109.46883 * 210.00141 * 22 20 18 25 25 H 1.48500 * 109.46933 * 330.00104 * 22 20 18 26 26 N 1.31229 * 125.97591 * 179.97438 * 12 11 9 27 27 C 1.39745 * 119.82579 * 0.25964 * 8 7 6 28 28 C 1.37698 * 119.90692 * 359.51220 * 27 8 7 29 29 H 4.38450 * 5.44481 * 179.97438 * 4 1 2 30 30 H 1.08992 * 109.47118 * 336.11076 * 3 2 1 31 31 H 1.08999 * 109.46659 * 216.11072 * 3 2 1 32 32 H 1.08002 * 119.95536 * 359.97438 * 6 5 4 33 33 H 1.08004 * 120.04249 * 179.97438 * 7 6 5 34 34 H 0.96996 * 119.99933 * 0.02562 * 11 9 8 35 35 H 1.07996 * 126.06589 * 0.02817 * 13 12 11 36 36 H 1.09002 * 109.47152 * 269.68932 * 15 14 13 37 37 H 1.09001 * 109.46980 * 149.69032 * 15 14 13 38 38 H 1.09004 * 109.47113 * 29.69013 * 15 14 13 39 39 H 1.09003 * 109.47000 * 209.99494 * 17 16 14 40 40 H 1.08996 * 109.47079 * 330.00441 * 17 16 14 41 41 H 0.96998 * 120.00028 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.04742 * 179.74112 * 27 8 7 43 43 H 1.08003 * 119.95489 * 180.21003 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.1444 -1.3395 5 6 4.4677 0.1645 -1.5163 6 6 4.9968 0.3011 -2.7943 7 6 6.3615 0.3214 -2.9779 8 6 7.2144 0.2050 -1.8772 9 6 8.6775 0.2257 -2.0695 10 8 9.1422 0.3447 -3.1868 11 7 9.4985 0.1127 -1.0067 12 6 10.8874 0.1329 -1.1892 13 6 11.5562 0.2697 -2.4163 14 6 12.8856 0.2384 -2.1700 15 6 13.9813 0.3485 -3.1987 16 7 13.0568 0.0969 -0.8387 17 6 14.3420 0.0225 -0.1394 18 6 14.7827 1.4099 0.2505 19 1 14.1672 2.2618 0.0020 20 6 15.9716 1.5916 0.9247 21 7 16.7213 0.5542 1.2269 22 14 16.5175 3.3113 1.4086 23 1 15.9898 3.6367 2.7580 24 1 18.0011 3.3721 1.4295 25 1 15.9956 4.2919 0.4232 26 7 11.7908 0.0328 -0.2426 27 6 6.6784 0.0628 -0.5945 28 6 5.3127 0.0482 -0.4189 29 1 -1.0501 -0.0002 0.0000 30 1 3.0097 -0.9387 0.4161 31 1 3.0089 0.8311 0.6057 32 1 4.3369 0.3907 -3.6445 33 1 6.7719 0.4272 -3.9713 34 1 9.1278 0.0174 -0.1155 35 1 11.0915 0.3783 -3.3851 36 1 14.2462 -0.6469 -3.5554 37 1 14.8562 0.8179 -2.7488 38 1 13.6342 0.9541 -4.0359 39 1 14.2334 -0.5893 0.7561 40 1 15.0879 -0.4243 -0.7967 41 1 17.5579 0.6821 1.7009 42 1 7.3343 -0.0317 0.2583 43 1 4.8976 -0.0582 0.5725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767936321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = 93.613606 kcal Electronic energy + Delta-G solvation = -26801.793935 eV Core-core repulsion = 22816.252459 eV Total energy + Delta-G solvation = -3985.541475 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98249 -40.52515 -39.40240 -37.48803 -34.92704 -34.00217 -33.41176 -31.80329 -31.28803 -30.98876 -30.32740 -28.13632 -26.66864 -26.33763 -24.19974 -23.25606 -22.72283 -21.25300 -19.84920 -19.41839 -18.98129 -18.78076 -17.26465 -16.68870 -16.60259 -16.59848 -15.93700 -15.42243 -15.21758 -15.14866 -14.66680 -14.33383 -14.21857 -14.02819 -13.78728 -13.42313 -13.40940 -12.97412 -12.61750 -12.48260 -12.33106 -12.21786 -11.87943 -11.67518 -11.54411 -11.41013 -11.08543 -11.04665 -10.84773 -10.73297 -10.45446 -10.25212 -9.97333 -9.62710 -9.53627 -9.46993 -8.69174 -8.65180 -7.94027 -7.45438 -6.26283 -4.34023 0.56881 0.94690 1.71734 2.19075 2.45801 2.74949 2.89635 3.05752 3.21191 3.27469 3.32346 3.43560 3.78798 3.84997 3.86544 4.25312 4.29691 4.42269 4.53651 4.58680 4.65610 4.85483 5.01276 5.07342 5.22344 5.27216 5.42808 5.55059 5.68040 5.74479 5.83332 5.94626 6.00935 6.10396 6.23661 6.25867 6.47473 6.56382 6.73638 6.82823 6.93104 6.94262 7.04566 7.43322 7.63979 7.66899 7.88131 8.04785 8.23465 8.64020 8.74489 9.32446 10.80911 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.001859 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.915297 B =15054.210272 C =15954.580244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.204 4.204 3 C 0.171 3.829 4 O -0.307 6.307 5 C 0.154 3.846 6 C -0.157 4.157 7 C -0.015 4.015 8 C -0.164 4.164 9 C 0.567 3.433 10 O -0.515 6.515 11 N -0.627 5.627 12 C 0.263 3.737 13 C -0.289 4.289 14 C 0.092 3.908 15 C -0.089 4.089 16 N -0.316 5.316 17 C 0.258 3.742 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.321 5.321 27 C -0.042 4.042 28 C -0.217 4.217 29 H 0.225 0.775 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.268 0.732 42 H 0.133 0.867 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.707 -2.434 -4.372 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.204 4.204 3 C 0.097 3.903 4 O -0.221 6.221 5 C 0.108 3.892 6 C -0.176 4.176 7 C -0.034 4.034 8 C -0.167 4.167 9 C 0.354 3.646 10 O -0.390 6.390 11 N -0.274 5.274 12 C 0.011 3.989 13 C -0.320 4.320 14 C -0.040 4.040 15 C -0.147 4.147 16 N -0.098 5.098 17 C 0.141 3.859 18 C -0.575 4.575 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.151 5.151 27 C -0.061 4.061 28 C -0.235 4.235 29 H 0.242 0.758 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.244 0.756 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.033 -2.539 -3.897 26.445 hybrid contribution -0.104 0.900 0.484 1.027 sum -26.138 -1.638 -3.413 26.410 Atomic orbital electron populations 1.25064 0.95911 1.00016 0.96137 1.22221 0.93508 1.01406 1.03240 1.19334 0.85088 1.02976 0.82902 1.86078 1.19462 1.87497 1.29025 1.19215 0.81613 0.93984 0.94400 1.20410 0.94987 1.07126 0.95040 1.21100 0.91299 0.91813 0.99203 1.19744 0.92449 1.10075 0.94474 1.18037 0.85833 0.76640 0.84071 1.90724 1.76569 1.47996 1.23685 1.42329 1.02581 1.71806 1.10711 1.18945 0.83450 1.03178 0.93357 1.21257 0.90977 1.20860 0.98860 1.21071 0.95895 1.00674 0.86327 1.20382 0.96148 1.02429 0.95748 1.48995 1.05276 1.51685 1.03888 1.19695 0.73951 0.98983 0.93317 1.21332 1.05848 0.92108 1.38243 0.91727 1.24925 0.95916 0.97835 0.95075 1.69919 1.13462 1.29771 1.39765 0.86356 0.77679 0.83524 0.79140 1.20357 1.20866 1.19648 1.77248 0.88590 1.29420 1.19858 1.21161 0.94784 0.93882 0.96266 1.21167 0.93994 1.09929 0.98430 0.75793 0.89121 0.89113 0.84261 0.83484 0.75559 0.82267 0.91062 0.89897 0.90588 0.92994 0.92750 0.92254 0.84913 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 19.25 29.55 0.57 -0.30 16 2 C -0.20 -1.45 13.73 -37.12 -0.51 -1.96 16 3 C 0.17 1.03 5.21 34.37 0.18 1.21 16 4 O -0.31 -2.64 10.08 -18.84 -0.19 -2.83 16 5 C 0.15 1.33 6.70 -39.02 -0.26 1.07 16 6 C -0.16 -1.39 9.97 -39.50 -0.39 -1.78 16 7 C -0.02 -0.15 9.58 -39.22 -0.38 -0.53 16 8 C -0.16 -1.85 5.87 -104.96 -0.62 -2.47 16 9 C 0.57 8.49 7.73 -12.45 -0.10 8.39 16 10 O -0.51 -9.16 13.46 5.28 0.07 -9.09 16 11 N -0.63 -9.87 5.40 -12.06 -0.07 -9.94 16 12 C 0.26 5.38 8.11 -154.44 -1.25 4.13 16 13 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 14 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 15 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 16 N -0.32 -7.50 3.59 -58.33 -0.21 -7.71 16 17 C 0.26 6.61 5.81 -5.19 -0.03 6.58 16 18 C -0.54 -14.75 9.39 -34.44 -0.32 -15.07 16 19 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 22 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 N -0.32 -7.39 12.59 31.43 0.40 -7.00 16 27 C -0.04 -0.37 9.53 -39.22 -0.37 -0.75 16 28 C -0.22 -1.64 9.01 -39.50 -0.36 -2.00 16 29 H 0.23 0.42 7.80 -54.08 -0.42 0.00 16 30 H 0.09 0.39 7.65 -51.93 -0.40 -0.01 16 31 H 0.09 0.40 7.65 -51.93 -0.40 0.00 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.15 1.44 7.64 -52.48 -0.40 1.04 16 34 H 0.41 5.13 6.84 -40.82 -0.28 4.85 16 35 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.37 7.65 -51.93 -0.40 0.98 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.13 0.93 6.40 -52.48 -0.34 0.59 16 43 H 0.14 0.66 6.28 -52.48 -0.33 0.33 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -34.03 381.08 -7.98 -42.01 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.91 Total: 4.90 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -4.53 Total: -7.93 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.86 Total: -48.83 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.12 Total: -11.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.03 -7.98 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767936321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.621 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds