Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34862 * 119.09863 * 2 1 4 4 C 1.41676 * 119.34214 * 179.77781 * 3 2 1 5 5 O 1.22083 * 121.06684 * 180.21551 * 4 3 2 6 6 C 1.47110 * 117.86027 * 0.45862 * 4 3 2 7 7 C 1.47239 * 120.88600 * 179.80647 * 6 4 3 8 8 O 1.21615 * 119.99801 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00445 * 179.97438 * 7 6 4 10 10 C 1.39172 * 120.00232 * 183.75071 * 9 7 6 11 11 C 1.39702 * 119.57640 * 338.98709 * 10 9 7 12 12 C 1.38646 * 119.49316 * 179.73242 * 11 10 9 13 13 C 1.38351 * 118.67097 * 0.53062 * 12 11 10 14 14 C 1.40573 * 119.13651 * 359.73542 * 13 12 11 15 15 C 1.41328 * 119.78944 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00074 * 354.85238 * 15 14 13 17 17 C 1.40029 * 120.00380 * 174.84821 * 15 14 13 18 18 N 1.30744 * 119.99965 * 5.12645 * 17 15 14 19 19 Si 1.86800 * 120.00382 * 185.12848 * 17 15 14 20 20 H 1.48496 * 109.47054 * 94.99613 * 19 17 15 21 21 H 1.48493 * 109.47252 * 215.00153 * 19 17 15 22 22 H 1.48506 * 109.46716 * 334.99935 * 19 17 15 23 23 N 1.31919 * 119.58056 * 159.26479 * 10 9 7 24 24 C 1.38021 * 118.23453 * 359.78177 * 6 4 3 25 25 N 1.34343 * 120.36545 * 0.02562 * 24 6 4 26 26 C 1.46497 * 118.80599 * 179.97438 * 25 24 6 27 27 C 1.53005 * 117.49793 * 3.59850 * 26 25 24 28 28 C 1.52993 * 59.99851 * 252.51049 * 27 26 25 29 29 H 1.08998 * 109.47589 * 269.73301 * 1 2 3 30 30 H 1.08997 * 109.47072 * 149.72887 * 1 2 3 31 31 H 1.09004 * 109.46831 * 29.73475 * 1 2 3 32 32 H 1.07999 * 120.32971 * 0.02562 * 3 2 1 33 33 H 0.97005 * 119.99570 * 3.74648 * 9 7 6 34 34 H 1.08007 * 120.25249 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.66068 * 180.24643 * 12 11 10 36 36 H 1.08001 * 120.42964 * 179.75203 * 13 12 11 37 37 H 0.96996 * 120.00082 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.81658 * 180.02562 * 24 6 4 39 39 H 1.09002 * 115.55350 * 149.30299 * 26 25 24 40 40 H 1.09004 * 117.49465 * 0.02562 * 27 26 25 41 41 H 1.08999 * 117.49719 * 145.02104 * 27 26 25 42 42 H 1.09010 * 117.50139 * 252.50877 * 28 27 26 43 43 H 1.09008 * 117.50097 * 107.48972 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1844 0.0048 5 8 4.2051 2.2328 0.0089 6 6 4.2726 -0.1132 -0.0008 7 6 5.7432 -0.1846 -0.0006 8 8 6.4016 0.8379 0.0038 9 7 6.3598 -1.3831 -0.0053 10 6 7.7475 -1.4521 0.0738 11 6 8.5145 -0.3393 -0.2800 12 6 9.8967 -0.4081 -0.1953 13 6 10.4777 -1.5895 0.2298 14 6 9.6517 -2.6761 0.5662 15 6 10.2306 -3.8894 1.0025 16 1 11.3040 -4.0080 0.9976 17 6 9.4124 -4.9376 1.4413 18 7 8.1121 -4.8326 1.3537 19 14 10.1785 -6.4860 2.1518 20 1 10.2301 -6.3784 3.6320 21 1 9.3594 -7.6641 1.7693 22 1 11.5554 -6.6464 1.6189 23 7 8.3221 -2.5691 0.4765 24 6 3.5076 -1.2620 -0.0058 25 7 2.1663 -1.1848 -0.0060 26 6 1.3878 -2.4257 -0.0119 27 6 2.1598 -3.7444 0.0676 28 6 1.4984 -3.3232 -1.2461 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3633 -0.8875 -0.5180 31 1 -0.3633 0.8924 -0.5097 32 1 1.6135 2.1083 0.0004 33 1 5.8362 -2.1976 -0.0637 34 1 8.0342 0.5690 -0.6132 35 1 10.5077 0.4422 -0.4602 36 1 11.5518 -1.6757 0.3024 37 1 7.5453 -5.5589 1.6572 38 1 3.9898 -2.2283 -0.0096 39 1 0.4215 -2.3769 0.4900 40 1 3.2469 -3.6884 0.1248 41 1 1.7014 -4.5633 0.6220 42 1 0.6048 -3.8650 -1.5561 43 1 2.1503 -2.9901 -2.0537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = 54.008805 kcal Electronic energy + Delta-G solvation = -28617.990829 eV Core-core repulsion = 24630.731961 eV Total energy + Delta-G solvation = -3987.258868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62712 -39.61352 -38.34090 -37.37212 -36.37818 -34.23521 -33.66026 -33.02928 -31.28315 -30.33874 -29.34812 -28.06951 -25.50514 -24.84542 -23.42224 -22.99067 -22.33580 -21.55864 -20.81753 -20.02704 -18.48495 -17.81893 -17.22788 -16.82963 -16.07200 -16.00869 -15.66398 -15.20564 -14.95337 -14.73989 -14.54681 -14.26472 -13.83191 -13.57314 -13.48353 -13.27702 -13.17362 -13.15071 -12.92310 -12.78979 -12.28034 -12.18637 -12.00367 -11.91056 -11.25714 -11.23489 -11.06968 -11.01714 -10.87369 -10.62327 -10.08290 -9.81207 -9.61249 -9.37435 -9.15365 -8.67338 -8.02167 -7.96743 -7.65565 -7.04875 -6.41019 -4.47747 0.78698 1.16517 2.01803 2.70310 2.94764 3.02251 3.07748 3.11975 3.27257 3.40058 3.58045 3.74514 3.95298 3.96730 4.03963 4.11739 4.19902 4.36050 4.52592 4.79368 4.80663 4.91855 4.94132 5.04869 5.09406 5.28598 5.33779 5.37464 5.44730 5.58496 5.69000 5.94688 6.18021 6.31110 6.43078 6.47223 6.64684 6.82726 6.86652 6.96175 7.16347 7.54429 7.57757 7.92707 7.98134 8.18423 8.22271 8.35903 8.72029 8.83805 9.01715 10.07185 10.32505 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.003461 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.514053 B = 8088.821120 C =10165.247006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.161 3.839 3 C -0.270 4.270 4 C 0.409 3.591 5 O -0.477 6.477 6 C -0.286 4.286 7 C 0.569 3.431 8 O -0.488 6.488 9 N -0.649 5.649 10 C 0.357 3.643 11 C -0.310 4.310 12 C -0.051 4.051 13 C -0.287 4.287 14 C 0.279 3.721 15 C -0.437 4.437 16 H 0.085 0.915 17 C 0.073 3.927 18 N -0.727 5.727 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.262 1.262 23 N -0.508 5.508 24 C 0.165 3.835 25 N -0.440 5.440 26 C 0.029 3.971 27 C -0.175 4.175 28 C -0.177 4.177 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.397 0.603 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.268 0.732 38 H 0.169 0.831 39 H 0.149 0.851 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.914 -2.255 -2.800 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.055 3.945 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.358 6.358 6 C -0.297 4.297 7 C 0.356 3.644 8 O -0.362 6.362 9 N -0.294 5.294 10 C 0.123 3.877 11 C -0.335 4.335 12 C -0.076 4.076 13 C -0.310 4.310 14 C 0.152 3.848 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.151 4.151 18 N -0.349 5.349 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.185 1.185 23 N -0.227 5.227 24 C 0.035 3.965 25 N -0.126 5.126 26 C -0.073 4.073 27 C -0.212 4.212 28 C -0.215 4.215 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.232 0.768 34 H 0.156 0.844 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.186 0.814 39 H 0.167 0.833 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.958 -1.886 -2.521 22.183 hybrid contribution 0.544 -0.702 0.222 0.916 sum -21.414 -2.588 -2.298 21.692 Atomic orbital electron populations 1.21144 0.88129 1.04873 1.04149 1.20204 0.94847 0.84560 0.94856 1.22251 0.96263 0.97056 1.13803 1.18130 0.88203 0.87806 0.76440 1.90824 1.69926 1.33109 1.41950 1.22555 0.94113 0.95031 1.17995 1.17389 0.85951 0.83454 0.77628 1.90729 1.64442 1.34213 1.46791 1.43066 1.06246 1.08189 1.71933 1.18463 0.82417 0.92307 0.94524 1.21916 0.93793 1.01256 1.16511 1.20858 0.94210 0.96201 0.96290 1.21734 0.98954 0.95576 1.14709 1.18170 0.85898 0.92139 0.88563 1.19538 0.94368 0.96115 1.36936 0.89736 1.26008 0.94685 0.99748 0.94636 1.70132 1.04151 1.30009 1.30651 0.86339 0.80268 0.80544 0.79774 1.19596 1.20277 1.18541 1.68044 1.12362 1.21877 1.20370 1.22313 0.82302 1.00384 0.91516 1.41989 1.04599 1.05765 1.60218 1.22430 0.98371 0.80784 1.05757 1.23600 1.01296 0.95671 1.00638 1.23580 1.04253 1.01493 0.92167 0.89359 0.90207 0.88902 0.82942 0.76794 0.84353 0.88250 0.88242 0.92108 0.81379 0.83343 0.86950 0.86284 0.86806 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.50 9.11 36.00 0.33 -0.17 16 2 C 0.16 1.38 6.64 -82.13 -0.55 0.84 16 3 C -0.27 -3.27 9.57 -39.47 -0.38 -3.65 16 4 C 0.41 7.25 6.97 -34.67 -0.24 7.00 16 5 O -0.48 -10.77 16.41 -15.18 -0.25 -11.02 16 6 C -0.29 -4.82 6.05 -102.72 -0.62 -5.45 16 7 C 0.57 12.18 7.67 -12.60 -0.10 12.09 16 8 O -0.49 -12.53 12.23 -14.76 -0.18 -12.71 16 9 N -0.65 -13.80 5.36 -12.43 -0.07 -13.86 16 10 C 0.36 9.22 7.51 -155.05 -1.16 8.05 16 11 C -0.31 -8.10 8.89 -38.88 -0.35 -8.45 16 12 C -0.05 -1.27 10.15 -39.39 -0.40 -1.67 16 13 C -0.29 -7.44 9.83 -38.66 -0.38 -7.82 16 14 C 0.28 7.82 6.55 -85.00 -0.56 7.26 16 15 C -0.44 -11.74 9.13 -37.74 -0.34 -12.09 16 16 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.83 5.49 -17.34 -0.10 1.74 16 18 N -0.73 -18.53 11.48 55.55 0.64 -17.89 16 19 Si 0.91 18.33 29.56 -169.99 -5.03 13.31 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 N -0.51 -14.03 7.91 -10.27 -0.08 -14.11 16 24 C 0.16 1.93 9.46 -16.53 -0.16 1.77 16 25 N -0.44 -3.79 2.91 -105.32 -0.31 -4.09 16 26 C 0.03 0.15 5.34 -67.93 -0.36 -0.21 16 27 C -0.17 -0.90 9.78 -26.73 -0.26 -1.16 16 28 C -0.18 -0.78 10.32 -26.74 -0.28 -1.06 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.19 6.50 -51.93 -0.34 -0.15 16 31 H 0.09 0.30 8.05 -51.93 -0.42 -0.12 16 32 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.40 7.12 6.91 -40.82 -0.28 6.84 16 34 H 0.14 3.68 5.17 -52.92 -0.27 3.41 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.27 6.10 8.29 -40.82 -0.34 5.77 16 38 H 0.17 1.68 3.95 -52.49 -0.21 1.47 16 39 H 0.15 0.37 6.82 -51.93 -0.35 0.01 16 40 H 0.11 0.73 5.89 -51.93 -0.31 0.42 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.29 8.14 -51.92 -0.42 -0.14 16 43 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -38.34 361.80 -10.40 -48.74 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.68 Total: 9.14 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -5.90 Total: -2.97 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.18 Total: -49.95 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.43 Total: -23.73 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.34 -10.40 -48.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.752 kcal (2) G-P(sol) polarization free energy of solvation -38.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds