Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34862 * 119.09863 * 2 1 4 4 C 1.41676 * 119.34214 * 179.77781 * 3 2 1 5 5 O 1.22083 * 121.06684 * 180.21551 * 4 3 2 6 6 C 1.47110 * 117.86027 * 0.45862 * 4 3 2 7 7 C 1.47239 * 120.88600 * 179.80647 * 6 4 3 8 8 O 1.21615 * 119.99801 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00445 * 179.97438 * 7 6 4 10 10 C 1.39172 * 120.00232 * 183.75071 * 9 7 6 11 11 C 1.39702 * 119.57640 * 338.98709 * 10 9 7 12 12 C 1.38646 * 119.49316 * 179.73242 * 11 10 9 13 13 C 1.38351 * 118.67097 * 0.53062 * 12 11 10 14 14 C 1.40573 * 119.13651 * 359.73542 * 13 12 11 15 15 C 1.41328 * 119.78944 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00074 * 354.85238 * 15 14 13 17 17 C 1.40029 * 120.00380 * 174.84821 * 15 14 13 18 18 N 1.30744 * 119.99965 * 5.12645 * 17 15 14 19 19 Si 1.86800 * 120.00382 * 185.12848 * 17 15 14 20 20 H 1.48496 * 109.47054 * 94.99613 * 19 17 15 21 21 H 1.48493 * 109.47252 * 215.00153 * 19 17 15 22 22 H 1.48506 * 109.46716 * 334.99935 * 19 17 15 23 23 N 1.31919 * 119.58056 * 159.26479 * 10 9 7 24 24 C 1.38021 * 118.23453 * 359.78177 * 6 4 3 25 25 N 1.34343 * 120.36545 * 0.02562 * 24 6 4 26 26 C 1.46497 * 118.80599 * 179.97438 * 25 24 6 27 27 C 1.53005 * 117.49793 * 3.59850 * 26 25 24 28 28 C 1.52993 * 59.99851 * 252.51049 * 27 26 25 29 29 H 1.08998 * 109.47589 * 269.73301 * 1 2 3 30 30 H 1.08997 * 109.47072 * 149.72887 * 1 2 3 31 31 H 1.09004 * 109.46831 * 29.73475 * 1 2 3 32 32 H 1.07999 * 120.32971 * 0.02562 * 3 2 1 33 33 H 0.97005 * 119.99570 * 3.74648 * 9 7 6 34 34 H 1.08007 * 120.25249 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.66068 * 180.24643 * 12 11 10 36 36 H 1.08001 * 120.42964 * 179.75203 * 13 12 11 37 37 H 0.96996 * 120.00082 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.81658 * 180.02562 * 24 6 4 39 39 H 1.09002 * 115.55350 * 149.30299 * 26 25 24 40 40 H 1.09004 * 117.49465 * 0.02562 * 27 26 25 41 41 H 1.08999 * 117.49719 * 145.02104 * 27 26 25 42 42 H 1.09010 * 117.50139 * 252.50877 * 28 27 26 43 43 H 1.09008 * 117.50097 * 107.48972 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1844 0.0048 5 8 4.2051 2.2328 0.0089 6 6 4.2726 -0.1132 -0.0008 7 6 5.7432 -0.1846 -0.0006 8 8 6.4016 0.8379 0.0038 9 7 6.3598 -1.3831 -0.0053 10 6 7.7475 -1.4521 0.0738 11 6 8.5145 -0.3393 -0.2800 12 6 9.8967 -0.4081 -0.1953 13 6 10.4777 -1.5895 0.2298 14 6 9.6517 -2.6761 0.5662 15 6 10.2306 -3.8894 1.0025 16 1 11.3040 -4.0080 0.9976 17 6 9.4124 -4.9376 1.4413 18 7 8.1121 -4.8326 1.3537 19 14 10.1785 -6.4860 2.1518 20 1 10.2301 -6.3784 3.6320 21 1 9.3594 -7.6641 1.7693 22 1 11.5554 -6.6464 1.6189 23 7 8.3221 -2.5691 0.4765 24 6 3.5076 -1.2620 -0.0058 25 7 2.1663 -1.1848 -0.0060 26 6 1.3878 -2.4257 -0.0119 27 6 2.1598 -3.7444 0.0676 28 6 1.4984 -3.3232 -1.2461 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3633 -0.8875 -0.5180 31 1 -0.3633 0.8924 -0.5097 32 1 1.6135 2.1083 0.0004 33 1 5.8362 -2.1976 -0.0637 34 1 8.0342 0.5690 -0.6132 35 1 10.5077 0.4422 -0.4602 36 1 11.5518 -1.6757 0.3024 37 1 7.5453 -5.5589 1.6572 38 1 3.9898 -2.2283 -0.0096 39 1 0.4215 -2.3769 0.4900 40 1 3.2469 -3.6884 0.1248 41 1 1.7014 -4.5633 0.6220 42 1 0.6048 -3.8650 -1.5561 43 1 2.1503 -2.9901 -2.0537 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = 29.423197 kcal Electronic energy + Delta-G solvation = -28619.056941 eV Core-core repulsion = 24630.731961 eV Total energy + Delta-G solvation = -3988.324980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.59335 -41.27931 -39.73562 -39.04547 -37.11983 -36.04461 -35.27473 -34.29008 -32.41297 -32.31015 -31.05877 -29.05123 -27.40215 -25.92893 -24.38095 -23.91135 -23.53836 -23.22252 -22.08598 -21.46599 -19.74994 -19.33391 -18.67697 -18.11001 -17.41683 -17.15611 -16.81577 -16.64288 -16.40478 -16.14340 -16.04509 -15.62571 -15.38556 -14.98772 -14.62637 -14.55645 -14.23749 -14.17581 -13.86101 -13.81009 -13.76738 -13.58822 -12.97133 -12.89623 -12.82147 -12.66670 -12.58721 -12.43259 -11.83074 -11.65898 -11.59614 -11.56027 -11.07365 -10.83216 -10.56145 -10.32538 -9.99985 -9.68733 -9.21452 -8.95735 -8.32257 -6.51602 -0.38148 0.21169 0.79782 1.07895 1.20019 1.44064 1.54764 1.57760 1.81918 1.97634 2.25702 2.52673 2.75518 2.88103 3.02351 3.35781 3.47876 3.55785 3.75687 3.80680 3.88241 3.99480 4.04586 4.27790 4.34156 4.48370 4.59369 4.72426 4.74557 4.77712 4.84344 4.84523 4.89492 4.97218 5.00156 5.11680 5.13831 5.21015 5.25952 5.60205 5.60812 5.63011 5.74227 5.92071 6.07308 6.22592 6.49691 6.75196 6.93538 7.00691 7.21848 8.04469 8.45501 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.003461 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.514053 B = 8088.821120 C =10165.247006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.192 3.808 3 C -0.294 4.294 4 C 0.389 3.611 5 O -0.558 6.558 6 C -0.340 4.340 7 C 0.566 3.434 8 O -0.542 6.542 9 N -0.640 5.640 10 C 0.350 3.650 11 C -0.337 4.337 12 C -0.050 4.050 13 C -0.304 4.304 14 C 0.244 3.756 15 C -0.463 4.463 16 H 0.092 0.908 17 C 0.027 3.973 18 N -0.750 5.750 19 Si 0.990 3.010 20 H -0.267 1.267 21 H -0.262 1.262 22 H -0.258 1.258 23 N -0.526 5.526 24 C 0.211 3.789 25 N -0.425 5.425 26 C 0.019 3.981 27 C -0.185 4.185 28 C -0.165 4.165 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.411 0.589 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.281 0.719 38 H 0.189 0.811 39 H 0.192 0.808 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.857 -6.099 -2.288 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 C -0.316 4.316 4 C 0.281 3.719 5 O -0.446 6.446 6 C -0.351 4.351 7 C 0.357 3.643 8 O -0.419 6.419 9 N -0.286 5.286 10 C 0.115 3.885 11 C -0.361 4.361 12 C -0.075 4.075 13 C -0.327 4.327 14 C 0.118 3.882 15 C -0.495 4.495 16 H 0.110 0.890 17 C -0.195 4.195 18 N -0.372 5.372 19 Si 0.810 3.190 20 H -0.192 1.192 21 H -0.186 1.186 22 H -0.182 1.182 23 N -0.246 5.246 24 C 0.077 3.923 25 N -0.107 5.107 26 C -0.081 4.081 27 C -0.222 4.222 28 C -0.203 4.203 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.186 0.814 33 H 0.249 0.751 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.205 0.795 39 H 0.209 0.791 40 H 0.111 0.889 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -25.997 -5.778 -2.028 26.708 hybrid contribution 1.531 0.285 0.043 1.558 sum -24.466 -5.493 -1.985 25.153 Atomic orbital electron populations 1.21402 0.83261 1.07094 1.06313 1.20927 0.97399 0.83043 0.90104 1.22158 0.93378 0.99593 1.16497 1.18873 0.90546 0.87084 0.75357 1.90772 1.71682 1.35106 1.47072 1.22093 0.91705 0.96907 1.24373 1.18121 0.87858 0.82418 0.75924 1.90679 1.66095 1.35791 1.49381 1.42970 1.04766 1.09090 1.71784 1.18778 0.84216 0.91881 0.93635 1.22034 0.94682 1.01333 1.18095 1.21166 0.94100 0.96928 0.95273 1.21916 0.99727 0.95558 1.15503 1.18727 0.86657 0.93444 0.89408 1.19935 0.95182 0.96724 1.37612 0.89025 1.26950 0.95117 1.02891 0.94518 1.70178 1.05514 1.31573 1.29935 0.85083 0.79392 0.75883 0.78622 1.19242 1.18650 1.18164 1.68109 1.12533 1.22367 1.21603 1.22400 0.83751 0.99298 0.86899 1.42585 1.03775 1.07973 1.56372 1.23088 0.99173 0.78561 1.07299 1.23716 1.00435 0.96274 1.01802 1.23683 1.04945 1.00473 0.91184 0.86820 0.87185 0.87565 0.81441 0.75126 0.85428 0.85522 0.86597 0.90787 0.79496 0.79066 0.88896 0.84111 0.83775 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.24 9.11 71.23 0.65 0.41 16 2 C 0.19 2.66 6.64 41.20 0.27 2.94 16 3 C -0.29 -7.05 9.57 22.34 0.21 -6.83 16 4 C 0.39 14.91 6.97 25.45 0.18 15.08 16 5 O -0.56 -28.08 16.41 13.55 0.22 -27.86 16 6 C -0.34 -12.19 6.05 -18.63 -0.11 -12.30 16 7 C 0.57 26.35 7.67 86.61 0.66 27.01 16 8 O -0.54 -30.72 12.23 15.06 0.18 -30.54 16 9 N -0.64 -28.89 5.36 -311.50 -1.67 -30.56 16 10 C 0.35 19.12 7.51 133.29 1.00 20.12 16 11 C -0.34 -18.79 8.89 22.72 0.20 -18.59 16 12 C -0.05 -2.63 10.15 22.39 0.23 -2.40 16 13 C -0.30 -16.36 9.83 22.87 0.22 -16.14 16 14 C 0.24 14.13 6.55 40.19 0.26 14.39 16 15 C -0.46 -25.22 9.13 23.46 0.21 -25.00 16 16 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 17 C 0.03 1.36 5.49 85.29 0.47 1.83 16 18 N -0.75 -38.07 11.48 21.84 0.25 -37.82 16 19 Si 0.99 36.72 29.56 68.60 2.03 38.75 16 20 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 22 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 23 N -0.53 -30.22 7.91 -186.41 -1.47 -31.69 16 24 C 0.21 4.78 9.46 84.26 0.80 5.58 16 25 N -0.42 -5.91 2.91 -487.14 -1.42 -7.33 16 26 C 0.02 0.09 5.34 44.99 0.24 0.33 16 27 C -0.19 -1.11 9.78 30.59 0.30 -0.81 16 28 C -0.17 -0.64 10.32 30.59 0.32 -0.33 16 29 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.11 -0.33 6.50 -2.39 -0.02 -0.35 16 31 H 0.11 0.10 8.05 -2.38 -0.02 0.08 16 32 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 33 H 0.41 15.36 6.91 -92.70 -0.64 14.72 16 34 H 0.13 7.42 5.17 -9.79 -0.05 7.37 16 35 H 0.13 5.71 8.06 -2.91 -0.02 5.68 16 36 H 0.12 5.64 8.06 -2.91 -0.02 5.62 16 37 H 0.28 12.50 8.29 -92.71 -0.77 11.73 16 38 H 0.19 3.53 3.95 -2.91 -0.01 3.52 16 39 H 0.19 -0.57 6.82 -2.39 -0.02 -0.58 16 40 H 0.09 0.97 5.89 -2.39 -0.01 0.95 16 41 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.14 -0.19 8.14 -2.38 -0.02 -0.21 16 43 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -95.04 361.80 4.66 -90.38 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.41 Total: 31.39 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.12 Total: 5.27 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.31 Total: -107.40 kcal Atomic # 8 Polarization: -58.81 SS G_CDS: 0.41 Total: -58.40 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -95.04 4.66 -90.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.803 kcal (2) G-P(sol) polarization free energy of solvation -95.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds