Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47199 * 109.51374 * 2 1 4 4 N 2.60802 * 109.51447 * 359.97438 * 2 1 3 5 5 C 1.53713 * 109.43753 * 120.28291 * 2 1 3 6 6 N 1.47163 * 108.16121 * 172.37309 * 5 2 1 7 7 C 1.34769 * 120.98156 * 129.43165 * 6 5 2 8 8 O 1.21672 * 120.00257 * 6.79769 * 7 6 5 9 9 C 1.46891 * 120.00283 * 186.79632 * 7 6 5 10 10 C 1.36123 * 125.43175 * 28.09399 * 9 7 6 11 11 C 1.41700 * 107.74796 * 179.97438 * 10 9 7 12 12 C 1.40018 * 133.35184 * 179.97438 * 11 10 9 13 13 C 1.36582 * 119.82889 * 180.02562 * 12 11 10 14 14 C 1.38856 * 120.60149 * 0.02562 * 13 12 11 15 15 C 1.37835 * 120.63209 * 0.02562 * 14 13 12 16 16 C 1.39090 * 119.81585 * 359.75083 * 15 14 13 17 17 N 1.37832 * 133.16033 * 179.62186 * 16 15 14 18 18 C 1.36896 * 125.62134 * 0.69494 * 17 16 15 19 19 H 1.07999 * 119.99840 * 141.91636 * 18 17 16 20 20 C 1.39012 * 119.99798 * 321.91042 * 18 17 16 21 21 N 1.31345 * 119.99727 * 341.19327 * 20 18 17 22 22 Si 1.86795 * 119.99797 * 161.18868 * 20 18 17 23 23 H 1.48496 * 109.47250 * 274.99720 * 22 20 18 24 24 H 1.48500 * 109.47301 * 34.99731 * 22 20 18 25 25 H 1.48503 * 109.47086 * 154.99888 * 22 20 18 26 26 C 1.47149 * 118.03462 * 309.16391 * 6 5 2 27 27 C 1.53295 * 108.38807 * 50.78181 * 26 6 5 28 28 O 1.42956 * 109.51396 * 239.89492 * 2 1 3 29 29 H 1.08995 * 109.47690 * 180.10061 * 1 2 3 30 30 H 1.08997 * 109.47498 * 300.10795 * 1 2 3 31 31 H 1.09005 * 109.46670 * 60.09987 * 1 2 3 32 32 H 1.08995 * 109.84132 * 52.69873 * 5 2 1 33 33 H 1.09000 * 109.75439 * 291.99892 * 5 2 1 34 34 H 1.08002 * 126.13017 * 0.02562 * 10 9 7 35 35 H 1.08001 * 120.09017 * 0.02562 * 12 11 10 36 36 H 1.08001 * 119.69723 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.68194 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.09310 * 180.02562 * 15 14 13 39 39 H 0.97010 * 119.99971 * 175.46118 * 21 20 18 40 40 H 1.08997 * 109.68194 * 170.50780 * 26 6 5 41 41 H 1.09006 * 109.68127 * 291.02199 * 26 6 5 42 42 H 1.08995 * 109.51404 * 67.62079 * 27 26 6 43 43 H 1.08998 * 109.51612 * 187.72584 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0217 1.3874 0.0000 4 7 2.4012 2.4582 -0.0011 5 6 2.0415 -0.7309 1.2517 6 7 3.5011 -0.8768 1.1334 7 6 4.3191 -0.5052 2.1379 8 8 3.8518 -0.1580 3.2063 9 6 5.7750 -0.5194 1.9430 10 6 6.4135 -0.3498 0.7529 11 6 7.8073 -0.4310 0.9952 12 6 8.9337 -0.3348 0.1690 13 6 10.1831 -0.4589 0.7067 14 6 10.3483 -0.6806 2.0674 15 6 9.2548 -0.7802 2.9006 16 6 7.9725 -0.6525 2.3770 17 7 6.7150 -0.7091 2.9383 18 6 6.4422 -0.9113 4.2645 19 1 5.6278 -0.3806 4.7353 20 6 7.2132 -1.7998 5.0051 21 7 7.9412 -2.7057 4.3930 22 14 7.2141 -1.7053 6.8706 23 1 8.2076 -0.6950 7.3147 24 1 5.8632 -1.3137 7.3471 25 1 7.5721 -3.0322 7.4333 26 6 4.0406 -1.4458 -0.1118 27 6 3.4313 -0.6850 -1.2949 28 8 2.0075 -0.6759 -1.1657 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3634 0.5155 0.8890 31 1 -0.3633 0.5123 -0.8909 32 1 1.5787 -1.7154 1.3203 33 1 1.8017 -0.1493 2.1418 34 1 5.9424 -0.1825 -0.2044 35 1 8.8150 -0.1628 -0.8906 36 1 11.0505 -0.3838 0.0675 37 1 11.3431 -0.7761 2.4768 38 1 9.3933 -0.9523 3.9578 39 1 8.5295 -3.2823 4.9052 40 1 5.1251 -1.3377 -0.1251 41 1 3.7761 -2.5012 -0.1779 42 1 3.8030 0.3396 -1.2992 43 1 3.7099 -1.1772 -2.2267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887674815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = 19.870884 kcal Electronic energy + Delta-G solvation = -29892.772616 eV Core-core repulsion = 25904.033416 eV Total energy + Delta-G solvation = -3988.739200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46710 -41.37515 -39.63633 -37.54019 -37.43158 -36.22246 -35.39064 -34.30233 -32.52681 -30.72272 -30.19317 -29.94062 -27.59752 -26.77442 -24.82690 -24.74391 -23.58289 -22.60709 -21.77992 -20.73281 -19.58341 -19.09387 -18.08464 -17.78025 -17.39605 -16.94295 -16.81283 -16.53083 -16.15108 -15.95376 -15.58985 -15.40456 -15.18703 -14.97830 -14.67165 -14.63626 -14.35770 -14.22255 -13.92631 -13.78166 -13.63746 -13.34965 -13.16117 -13.12163 -12.95927 -12.82228 -12.70159 -12.61519 -12.37832 -12.20768 -11.99928 -11.83444 -11.56196 -11.46338 -11.03217 -10.89724 -10.35980 -9.75482 -9.02690 -8.66198 -8.34795 -6.43469 0.11142 1.07111 1.27377 1.29281 1.31868 1.38266 1.40825 1.50748 1.65869 2.09626 2.32998 2.51636 2.65332 2.79987 2.97420 3.34296 3.37831 3.62984 3.87449 3.91117 4.11255 4.18976 4.30966 4.38443 4.41515 4.44682 4.59067 4.66044 4.70023 4.77604 4.84693 4.86291 4.92420 5.00007 5.07565 5.16285 5.25152 5.30253 5.39723 5.43333 5.71652 5.80017 5.88412 5.94745 6.06551 6.21622 6.26431 6.36828 6.54217 6.89488 7.11311 7.42097 8.30859 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.004384 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.340595 B = 6385.883611 C = 7927.183661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.210 3.790 3 C 0.199 3.801 4 N -0.456 5.456 5 C 0.093 3.907 6 N -0.609 5.609 7 C 0.590 3.410 8 O -0.575 6.575 9 C -0.050 4.050 10 C -0.199 4.199 11 C -0.144 4.144 12 C -0.087 4.087 13 C -0.152 4.152 14 C -0.138 4.138 15 C -0.090 4.090 16 C 0.057 3.943 17 N -0.259 5.259 18 C -0.378 4.378 19 H 0.093 0.907 20 C 0.022 3.978 21 N -0.845 5.845 22 Si 0.988 3.012 23 H -0.260 1.260 24 H -0.268 1.268 25 H -0.262 1.262 26 C 0.034 3.966 27 C 0.046 3.954 28 O -0.343 6.343 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.286 0.714 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.042 0.958 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.174 -1.857 -11.933 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 C -0.120 4.120 4 N -0.133 5.133 5 C -0.030 4.030 6 N -0.343 5.343 7 C 0.381 3.619 8 O -0.455 6.455 9 C -0.166 4.166 10 C -0.226 4.226 11 C -0.149 4.149 12 C -0.105 4.105 13 C -0.171 4.171 14 C -0.158 4.158 15 C -0.110 4.110 16 C -0.057 4.057 17 N 0.079 4.921 18 C -0.506 4.506 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.474 5.474 22 Si 0.809 3.191 23 H -0.185 1.185 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.087 4.087 27 C -0.031 4.031 28 O -0.259 6.259 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.189 0.811 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.060 0.940 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.008 -0.481 -11.111 13.704 hybrid contribution 0.279 -0.218 1.629 1.667 sum -7.729 -0.698 -9.482 12.253 Atomic orbital electron populations 1.21896 0.85091 1.06982 1.05017 1.19805 0.98245 0.77725 0.87658 1.30520 0.92709 0.96091 0.92705 1.81180 1.09110 1.14743 1.08298 1.22624 0.79128 1.03682 0.97551 1.47793 1.06450 1.63133 1.16945 1.17358 0.85301 0.76068 0.83134 1.90704 1.77719 1.50163 1.26924 1.20131 0.89883 1.16875 0.89731 1.20828 0.91790 1.14111 0.95847 1.18422 0.94570 1.09266 0.92627 1.20498 0.90516 1.00263 0.99256 1.20774 0.97494 1.04113 0.94689 1.20998 0.97253 1.03214 0.94332 1.20196 0.90310 1.01306 0.99235 1.18703 0.86524 1.07144 0.93319 1.40103 1.02869 1.43699 1.05435 1.19993 1.20654 1.26331 0.83574 0.88910 1.26386 0.95069 0.91723 1.05656 1.70081 1.22869 1.14727 1.39751 0.85045 0.79534 0.78853 0.75698 1.18511 1.19227 1.18565 1.23491 1.03798 0.99380 0.82020 1.23272 0.79882 1.00026 0.99893 1.88137 1.22073 1.74266 1.41407 0.86608 0.88932 0.89550 0.85222 0.89087 0.81058 0.83808 0.83421 0.84826 0.88995 0.90400 0.85694 0.88208 0.93996 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 8.81 71.98 0.63 -0.84 16 2 C 0.21 4.18 1.05 -12.36 -0.01 4.17 16 3 C 0.20 5.55 12.37 89.44 1.11 6.65 16 4 N -0.46 -15.58 18.54 20.01 0.37 -15.21 16 5 C 0.09 2.28 5.30 86.49 0.46 2.74 16 6 N -0.61 -19.79 2.76 -821.00 -2.26 -22.05 16 7 C 0.59 26.81 7.48 86.51 0.65 27.46 16 8 O -0.58 -30.14 14.85 -4.26 -0.06 -30.21 16 9 C -0.05 -2.44 6.38 39.91 0.25 -2.18 16 10 C -0.20 -8.30 8.54 22.63 0.19 -8.11 16 11 C -0.14 -6.44 6.16 -21.34 -0.13 -6.58 16 12 C -0.09 -3.13 10.06 22.31 0.22 -2.90 16 13 C -0.15 -5.17 9.97 22.03 0.22 -4.96 16 14 C -0.14 -5.37 10.02 22.32 0.22 -5.15 16 15 C -0.09 -4.39 8.55 22.38 0.19 -4.20 16 16 C 0.06 2.96 6.10 39.06 0.24 3.20 16 17 N -0.26 -14.43 2.83 -331.34 -0.94 -15.37 16 18 C -0.38 -21.86 9.15 84.09 0.77 -21.09 16 19 H 0.09 5.67 6.76 -2.91 -0.02 5.65 16 20 C 0.02 1.15 4.39 84.95 0.37 1.52 16 21 N -0.84 -45.55 10.92 21.67 0.24 -45.32 16 22 Si 0.99 41.86 29.60 68.60 2.03 43.89 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C 0.03 0.84 6.01 86.35 0.52 1.36 16 27 C 0.05 0.87 6.61 72.08 0.48 1.35 16 28 O -0.34 -6.34 10.21 -148.98 -1.52 -7.86 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.58 7.13 -2.39 -0.02 2.56 16 34 H 0.17 5.58 5.93 -2.91 -0.02 5.57 16 35 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.09 4.72 6.40 -2.91 -0.02 4.70 16 39 H 0.29 14.15 8.31 -92.70 -0.77 13.38 16 40 H 0.13 3.55 3.17 -2.39 -0.01 3.55 16 41 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.04 0.95 7.02 -2.39 -0.02 0.94 16 43 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -78.31 355.73 5.30 -73.01 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.07 Total: 26.66 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 6.38 Total: -7.54 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.59 Total: -97.94 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.58 Total: -38.07 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -78.31 5.30 -73.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887674815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.879 kcal (2) G-P(sol) polarization free energy of solvation -78.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds