Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38118 * 126.29464 * 2 1 4 4 C 1.47291 * 126.42635 * 0.02792 * 3 2 1 5 5 O 1.21520 * 120.00232 * 359.97438 * 4 3 2 6 6 O 1.34760 * 120.00009 * 179.97438 * 4 3 2 7 7 C 1.45194 * 116.99906 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46954 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47128 * 67.02680 * 8 7 6 10 10 C 1.46465 * 110.99795 * 64.06770 * 9 8 7 11 11 C 1.53257 * 109.85641 * 162.23162 * 10 9 8 12 12 S 1.81900 * 108.66852 * 61.90649 * 11 10 9 13 13 C 1.81993 * 101.87718 * 308.95283 * 12 11 10 14 14 C 1.46467 * 110.99954 * 298.08426 * 9 8 7 15 15 C 1.41343 * 107.14888 * 180.28541 * 3 2 1 16 16 N 1.30433 * 108.00706 * 359.55361 * 15 3 2 17 17 N 1.34218 * 126.29356 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.74931 * 359.93954 * 17 2 1 19 19 C 1.50695 * 109.46890 * 89.99905 * 18 17 2 20 20 H 1.08001 * 120.00484 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99839 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99716 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00105 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47318 * 60.00082 * 23 21 19 25 25 H 1.48501 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46768 * 299.99870 * 23 21 19 27 27 H 1.09000 * 109.47166 * 89.97229 * 1 2 3 28 28 H 1.09004 * 109.46870 * 209.97325 * 1 2 3 29 29 H 1.08998 * 109.47340 * 329.96841 * 1 2 3 30 30 H 1.08997 * 109.47370 * 59.99770 * 7 6 4 31 31 H 1.09007 * 109.47131 * 299.99251 * 7 6 4 32 32 H 1.09000 * 109.47233 * 307.02554 * 8 7 6 33 33 H 1.08999 * 109.47393 * 187.02842 * 8 7 6 34 34 H 1.09001 * 109.41192 * 42.11589 * 10 9 8 35 35 H 1.08993 * 109.40915 * 282.35174 * 10 9 8 36 36 H 1.09002 * 109.63246 * 181.70700 * 11 10 9 37 37 H 1.08998 * 109.63124 * 302.09679 * 11 10 9 38 38 H 1.08998 * 109.46172 * 291.34915 * 13 12 11 39 39 H 1.08995 * 109.81750 * 170.94266 * 13 12 11 40 40 H 1.08996 * 109.40719 * 317.88957 * 14 9 8 41 41 H 1.08997 * 109.40417 * 77.72888 * 14 9 8 42 42 H 1.08001 * 125.99829 * 179.74256 * 15 3 2 43 43 H 1.08997 * 109.47158 * 210.00563 * 18 17 2 44 44 H 1.09001 * 109.46517 * 330.00235 * 18 17 2 45 45 H 0.97005 * 119.99747 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0006 5 8 0.7018 2.7873 0.0006 6 8 2.8014 3.5097 0.0010 7 6 2.2981 4.8716 0.0010 8 6 3.4745 5.8500 0.0009 9 7 4.1966 5.7474 -1.2743 10 6 3.3468 6.1609 -2.3933 11 6 4.2138 6.4707 -3.6185 12 16 5.0944 4.9558 -4.1068 13 6 5.8429 4.4337 -2.5322 14 6 4.7517 4.4044 -1.4566 15 6 3.6599 0.6497 -0.0067 16 7 3.6340 -0.6544 -0.0008 17 7 2.3015 -1.0818 -0.0005 18 6 1.8499 -2.4755 0.0001 19 6 1.6938 -2.9535 -1.4204 20 1 1.9098 -2.2862 -2.2417 21 6 1.2751 -4.2429 -1.6718 22 7 1.0115 -5.0554 -0.6718 23 14 1.0823 -4.8358 -3.4327 24 1 2.3882 -4.7397 -4.1332 25 1 0.6232 -6.2480 -3.4320 26 1 0.0816 -3.9908 -4.1326 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.6899 5.0343 0.8907 31 1 1.6906 5.0345 -0.8893 32 1 4.1496 5.6066 0.8213 33 1 3.1017 6.8665 0.1266 34 1 2.7857 7.0521 -2.1121 35 1 2.6510 5.3578 -2.6358 36 1 3.5807 6.8070 -4.4396 37 1 4.9348 7.2494 -3.3695 38 1 6.6197 5.1430 -2.2466 39 1 6.2767 3.4397 -2.6410 40 1 5.1798 4.0586 -0.5157 41 1 3.9586 3.7235 -1.7655 42 1 4.5461 1.2669 -0.0124 43 1 2.5848 -3.0954 0.5135 44 1 0.8916 -2.5465 0.5148 45 1 0.7174 -5.9627 -0.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892840344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -12.786766 kcal Electronic energy + Delta-G solvation = -27561.494480 eV Core-core repulsion = 23706.783090 eV Total energy + Delta-G solvation = -3854.711390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96521 -39.96798 -38.48472 -35.98703 -33.96601 -32.26291 -32.01904 -31.80156 -31.24922 -28.27646 -27.31235 -26.75602 -23.99836 -23.88865 -23.29384 -22.20187 -20.79076 -20.35214 -18.96055 -17.46977 -17.11113 -16.91152 -16.77654 -16.28435 -15.63537 -15.32984 -15.22787 -14.62498 -14.37961 -14.35880 -14.17681 -13.92548 -13.51348 -13.28045 -13.10414 -12.95261 -12.71694 -12.52461 -12.43468 -12.20505 -12.09145 -11.95747 -11.86793 -11.65463 -11.57951 -11.17942 -10.99351 -10.90414 -10.51020 -10.46865 -10.34667 -10.01052 -9.88985 -9.86004 -8.74543 -8.71037 -8.69759 -8.12289 -7.84369 -6.37782 -4.46120 1.60049 1.86180 2.34590 2.65481 2.72809 3.18218 3.22332 3.24425 3.34632 3.47513 3.61701 4.21266 4.44546 4.58862 4.67685 4.78148 4.88736 4.94561 4.96327 5.03464 5.07778 5.09233 5.12391 5.18018 5.32524 5.35122 5.45168 5.50784 5.57712 5.64014 5.65553 5.86649 5.88885 5.99397 6.29592 6.33132 6.60032 6.64507 6.69658 6.72867 6.83772 7.08154 7.48579 7.67471 7.71749 8.10897 8.29588 8.58822 9.21208 10.70424 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.002883 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.153827 B = 9709.470102 C =10774.871152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.319 4.319 4 C 0.549 3.451 5 O -0.530 6.530 6 O -0.352 6.352 7 C 0.029 3.971 8 C 0.063 3.937 9 N -0.548 5.548 10 C 0.050 3.950 11 C -0.074 4.074 12 S -0.275 6.275 13 C -0.075 4.075 14 C 0.057 3.943 15 C 0.080 3.920 16 N -0.295 5.295 17 N -0.310 5.310 18 C 0.251 3.749 19 C -0.543 4.543 20 H 0.065 0.935 21 C 0.069 3.931 22 N -0.889 5.889 23 Si 0.909 3.091 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.183 0.817 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 22.546 0.840 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.333 4.333 4 C 0.396 3.604 5 O -0.421 6.421 6 O -0.270 6.270 7 C -0.047 4.047 8 C -0.065 4.065 9 N -0.272 5.272 10 C -0.080 4.080 11 C -0.223 4.223 12 S -0.050 6.050 13 C -0.223 4.223 14 C -0.071 4.071 15 C -0.107 4.107 16 N -0.115 5.115 17 N -0.085 5.085 18 C 0.134 3.866 19 C -0.581 4.581 20 H 0.084 0.916 21 C -0.135 4.135 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.199 0.801 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.267 21.014 -0.114 21.664 hybrid contribution -1.362 0.388 0.146 1.423 sum 3.905 21.401 0.032 21.755 Atomic orbital electron populations 1.20620 0.86600 1.03990 1.04182 1.21454 0.94972 0.86481 0.93656 1.18818 0.93754 0.89272 1.31422 1.20105 0.83461 0.85035 0.71778 1.90759 1.18047 1.84565 1.48697 1.86652 1.39659 1.15505 1.85140 1.23756 0.98332 0.79646 1.02988 1.22382 0.93873 0.97886 0.92327 1.61350 1.36416 1.27280 1.02149 1.22263 0.94209 1.01053 0.90451 1.23455 1.01206 0.97378 1.00249 1.87112 1.66261 1.33020 1.18569 1.23588 1.00173 1.05071 0.93502 1.22342 0.96872 0.88801 0.99119 1.23860 0.96488 0.92156 0.98214 1.77220 0.98272 1.12307 1.23658 1.49434 1.02592 1.08321 1.48198 1.19906 0.96504 0.70600 0.99591 1.21199 1.47776 0.98266 0.90884 0.91634 1.24917 0.94325 0.95931 0.98376 1.69902 1.44249 1.07268 1.31223 0.86370 0.78968 0.77776 0.83377 1.19803 1.20823 1.19822 0.89521 0.90438 0.88941 0.90837 0.91352 0.89008 0.88394 0.89765 0.93000 0.87683 0.89172 0.89341 0.87290 0.89000 0.91541 0.80057 0.92296 0.92468 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.78 6.13 -105.08 -0.64 -6.43 16 4 C 0.55 8.97 7.95 34.41 0.27 9.24 16 5 O -0.53 -9.50 14.63 -19.28 -0.28 -9.78 16 6 O -0.35 -4.54 6.91 -40.66 -0.28 -4.83 16 7 C 0.03 0.29 5.35 37.16 0.20 0.49 16 8 C 0.06 0.46 5.79 -3.82 -0.02 0.44 16 9 N -0.55 -4.68 4.59 -235.04 -1.08 -5.76 16 10 C 0.05 0.41 4.62 -3.93 -0.02 0.39 16 11 C -0.07 -0.62 6.68 37.29 0.25 -0.37 16 12 S -0.28 -3.05 22.42 -107.50 -2.41 -5.46 16 13 C -0.07 -0.71 6.68 37.29 0.25 -0.47 16 14 C 0.06 0.56 3.93 -3.93 -0.02 0.55 16 15 C 0.08 1.41 11.87 -16.97 -0.20 1.21 16 16 N -0.30 -6.26 12.50 30.87 0.39 -5.88 16 17 N -0.31 -6.85 3.56 -57.76 -0.21 -7.05 16 18 C 0.25 6.11 5.97 -5.19 -0.03 6.08 16 19 C -0.54 -14.42 9.39 -34.44 -0.32 -14.75 16 20 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 23 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.30 7.05 -51.93 -0.37 0.93 16 29 H 0.09 1.50 6.50 -51.93 -0.34 1.17 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.73 6.58 -51.92 -0.34 0.39 16 32 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.10 0.52 7.98 -51.93 -0.41 0.10 16 34 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 35 H 0.05 0.53 6.97 -51.93 -0.36 0.17 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 41 H 0.07 0.82 6.34 -51.93 -0.33 0.49 16 42 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.06 1.37 7.01 -51.93 -0.36 1.01 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -29.95 378.30 -9.73 -39.68 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.67 Total: 1.66 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -0.61 Total: -0.36 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.16 Total: -42.23 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.56 Total: -14.60 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.41 Total: -5.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.95 -9.73 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892840344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.893 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds