Wall clock time and date at job start Sat Apr 11 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38118 * 126.29464 * 2 1 4 4 C 1.47291 * 126.42635 * 0.02792 * 3 2 1 5 5 O 1.21520 * 120.00232 * 359.97438 * 4 3 2 6 6 O 1.34760 * 120.00009 * 179.97438 * 4 3 2 7 7 C 1.45194 * 116.99906 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46954 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47128 * 67.02680 * 8 7 6 10 10 C 1.46465 * 110.99795 * 64.06770 * 9 8 7 11 11 C 1.53257 * 109.85641 * 162.23162 * 10 9 8 12 12 S 1.81900 * 108.66852 * 61.90649 * 11 10 9 13 13 C 1.81993 * 101.87718 * 308.95283 * 12 11 10 14 14 C 1.46467 * 110.99954 * 298.08426 * 9 8 7 15 15 C 1.41343 * 107.14888 * 180.28541 * 3 2 1 16 16 N 1.30433 * 108.00706 * 359.55361 * 15 3 2 17 17 N 1.34218 * 126.29356 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.74931 * 359.93954 * 17 2 1 19 19 C 1.50695 * 109.46890 * 89.99905 * 18 17 2 20 20 H 1.08001 * 120.00484 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99839 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99716 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00105 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47318 * 60.00082 * 23 21 19 25 25 H 1.48501 * 109.47241 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46768 * 299.99870 * 23 21 19 27 27 H 1.09000 * 109.47166 * 89.97229 * 1 2 3 28 28 H 1.09004 * 109.46870 * 209.97325 * 1 2 3 29 29 H 1.08998 * 109.47340 * 329.96841 * 1 2 3 30 30 H 1.08997 * 109.47370 * 59.99770 * 7 6 4 31 31 H 1.09007 * 109.47131 * 299.99251 * 7 6 4 32 32 H 1.09000 * 109.47233 * 307.02554 * 8 7 6 33 33 H 1.08999 * 109.47393 * 187.02842 * 8 7 6 34 34 H 1.09001 * 109.41192 * 42.11589 * 10 9 8 35 35 H 1.08993 * 109.40915 * 282.35174 * 10 9 8 36 36 H 1.09002 * 109.63246 * 181.70700 * 11 10 9 37 37 H 1.08998 * 109.63124 * 302.09679 * 11 10 9 38 38 H 1.08998 * 109.46172 * 291.34915 * 13 12 11 39 39 H 1.08995 * 109.81750 * 170.94266 * 13 12 11 40 40 H 1.08996 * 109.40719 * 317.88957 * 14 9 8 41 41 H 1.08997 * 109.40417 * 77.72888 * 14 9 8 42 42 H 1.08001 * 125.99829 * 179.74256 * 15 3 2 43 43 H 1.08997 * 109.47158 * 210.00563 * 18 17 2 44 44 H 1.09001 * 109.46517 * 330.00235 * 18 17 2 45 45 H 0.97005 * 119.99747 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0006 5 8 0.7018 2.7873 0.0006 6 8 2.8014 3.5097 0.0010 7 6 2.2981 4.8716 0.0010 8 6 3.4745 5.8500 0.0009 9 7 4.1966 5.7474 -1.2743 10 6 3.3468 6.1609 -2.3933 11 6 4.2138 6.4707 -3.6185 12 16 5.0944 4.9558 -4.1068 13 6 5.8429 4.4337 -2.5322 14 6 4.7517 4.4044 -1.4566 15 6 3.6599 0.6497 -0.0067 16 7 3.6340 -0.6544 -0.0008 17 7 2.3015 -1.0818 -0.0005 18 6 1.8499 -2.4755 0.0001 19 6 1.6938 -2.9535 -1.4204 20 1 1.9098 -2.2862 -2.2417 21 6 1.2751 -4.2429 -1.6718 22 7 1.0115 -5.0554 -0.6718 23 14 1.0823 -4.8358 -3.4327 24 1 2.3882 -4.7397 -4.1332 25 1 0.6232 -6.2480 -3.4320 26 1 0.0816 -3.9908 -4.1326 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.6899 5.0343 0.8907 31 1 1.6906 5.0345 -0.8893 32 1 4.1496 5.6066 0.8213 33 1 3.1017 6.8665 0.1266 34 1 2.7857 7.0521 -2.1121 35 1 2.6510 5.3578 -2.6358 36 1 3.5807 6.8070 -4.4396 37 1 4.9348 7.2494 -3.3695 38 1 6.6197 5.1430 -2.2466 39 1 6.2767 3.4397 -2.6410 40 1 5.1798 4.0586 -0.5157 41 1 3.9586 3.7235 -1.7655 42 1 4.5461 1.2669 -0.0124 43 1 2.5848 -3.0954 0.5135 44 1 0.8916 -2.5465 0.5148 45 1 0.7174 -5.9627 -0.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892840344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:01 Heat of formation + Delta-G solvation = -30.171329 kcal Electronic energy + Delta-G solvation = -27562.248331 eV Core-core repulsion = 23706.783090 eV Total energy + Delta-G solvation = -3855.465242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44241 -41.10732 -39.35333 -37.12612 -35.84979 -33.93462 -33.01032 -32.64184 -32.49491 -29.61984 -28.65866 -28.13272 -25.57829 -24.59865 -24.49468 -23.40310 -21.82699 -21.46355 -20.47709 -18.94287 -18.70488 -17.97458 -17.76845 -17.43863 -16.84453 -16.48058 -16.36153 -16.23294 -15.82544 -15.23871 -15.07313 -14.95079 -14.70184 -14.44019 -14.32231 -14.06583 -13.88108 -13.75363 -13.68670 -13.62493 -13.19739 -13.15114 -13.03239 -12.93116 -12.71222 -12.67659 -12.36846 -12.32582 -11.90597 -11.85213 -11.70617 -11.45937 -11.28294 -10.77480 -10.64036 -10.34843 -9.67163 -9.43889 -8.69935 -8.40033 -6.56268 0.42173 0.85601 1.18257 1.37168 1.38167 1.42052 1.49284 1.61708 1.91455 2.23936 2.31318 2.79287 2.92800 3.63764 3.70680 3.77737 3.90721 3.94682 4.02289 4.10732 4.14619 4.23175 4.26215 4.36914 4.37447 4.43975 4.49430 4.56501 4.68859 4.72929 4.76405 4.84556 4.88364 4.90939 4.94721 4.98999 5.08350 5.09241 5.41551 5.46757 5.60178 5.71906 5.94084 5.94825 6.00357 6.51649 6.71768 6.89633 7.14981 8.67840 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.002883 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.153827 B = 9709.470102 C =10774.871152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.158 3.842 3 C -0.321 4.321 4 C 0.555 3.445 5 O -0.547 6.547 6 O -0.343 6.343 7 C 0.024 3.976 8 C 0.070 3.930 9 N -0.545 5.545 10 C 0.051 3.949 11 C -0.059 4.059 12 S -0.340 6.340 13 C -0.062 4.062 14 C 0.062 3.938 15 C 0.099 3.901 16 N -0.334 5.334 17 N -0.333 5.333 18 C 0.267 3.733 19 C -0.559 4.559 20 H 0.052 0.948 21 C 0.027 3.973 22 N -0.915 5.915 23 Si 0.969 3.031 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.267 1.267 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.029 0.971 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.223 0.777 43 H 0.034 0.966 44 H 0.055 0.945 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 25.037 0.807 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.021 3.979 3 C -0.334 4.334 4 C 0.403 3.597 5 O -0.439 6.439 6 O -0.259 6.259 7 C -0.051 4.051 8 C -0.058 4.058 9 N -0.269 5.269 10 C -0.079 4.079 11 C -0.207 4.207 12 S -0.115 6.115 13 C -0.210 4.210 14 C -0.067 4.067 15 C -0.088 4.088 16 N -0.153 5.153 17 N -0.109 5.109 18 C 0.148 3.852 19 C -0.597 4.597 20 H 0.070 0.930 21 C -0.175 4.175 22 N -0.553 5.553 23 Si 0.792 3.208 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.192 1.192 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.048 0.952 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.058 0.942 42 H 0.239 0.761 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.551 23.537 -0.137 24.184 hybrid contribution -1.407 -0.200 0.188 1.433 sum 4.144 23.337 0.051 23.702 Atomic orbital electron populations 1.20636 0.85342 1.04524 1.04300 1.21953 0.96039 0.86483 0.93418 1.19071 0.93773 0.90149 1.30428 1.19797 0.83465 0.85039 0.71393 1.90749 1.18847 1.84873 1.49458 1.86647 1.38594 1.16400 1.84283 1.24102 0.99844 0.78158 1.03000 1.22541 0.92876 0.98466 0.91892 1.61395 1.36545 1.26166 1.02763 1.22290 0.93854 1.01351 0.90359 1.23502 1.01094 0.95437 1.00663 1.87329 1.67437 1.35718 1.21018 1.23561 1.00133 1.05262 0.92075 1.22257 0.96148 0.89043 0.99293 1.24488 0.97659 0.91216 0.95443 1.77171 0.98148 1.14232 1.25790 1.49170 1.03402 1.07871 1.50480 1.19434 0.95539 0.71954 0.98227 1.21358 1.48181 0.98589 0.91539 0.93000 1.25687 0.93761 0.95895 1.02157 1.69979 1.44617 1.07654 1.33024 0.85440 0.78821 0.77754 0.78738 1.19928 1.19680 1.19156 0.89514 0.90421 0.87772 0.90164 0.92048 0.88063 0.85351 0.87073 0.95229 0.86608 0.88090 0.88277 0.87416 0.88125 0.94244 0.76096 0.94770 0.92735 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 9.57 71.24 0.68 -2.46 16 2 C 0.16 6.30 7.01 42.17 0.30 6.60 16 3 C -0.32 -11.41 6.13 -20.16 -0.12 -11.54 16 4 C 0.56 17.42 7.95 70.20 0.56 17.98 16 5 O -0.55 -18.95 14.63 19.77 0.29 -18.66 16 6 O -0.34 -8.13 6.91 -56.71 -0.39 -8.52 16 7 C 0.02 0.42 5.35 71.98 0.38 0.81 16 8 C 0.07 0.76 5.79 86.30 0.50 1.26 16 9 N -0.55 -7.69 4.59 -897.52 -4.12 -11.80 16 10 C 0.05 0.71 4.62 86.47 0.40 1.11 16 11 C -0.06 -0.85 6.68 72.07 0.48 -0.37 16 12 S -0.34 -7.35 22.42 -56.49 -1.27 -8.61 16 13 C -0.06 -1.10 6.68 72.07 0.48 -0.62 16 14 C 0.06 1.08 3.93 86.47 0.34 1.42 16 15 C 0.10 3.38 11.87 85.66 1.02 4.40 16 16 N -0.33 -14.32 12.50 -56.25 -0.70 -15.03 16 17 N -0.33 -15.11 3.56 -336.66 -1.20 -16.31 16 18 C 0.27 13.50 5.97 85.63 0.51 14.01 16 19 C -0.56 -30.43 9.39 25.60 0.24 -30.19 16 20 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 21 C 0.03 1.43 5.46 84.66 0.46 1.89 16 22 N -0.92 -50.58 13.29 21.45 0.28 -50.30 16 23 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.08 2.66 7.05 -2.38 -0.02 2.65 16 29 H 0.10 3.35 6.50 -2.39 -0.02 3.33 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.19 6.58 -2.38 -0.02 1.17 16 32 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 33 H 0.13 0.72 7.98 -2.39 -0.02 0.70 16 34 H 0.11 0.98 7.85 -2.39 -0.02 0.96 16 35 H 0.03 0.56 6.97 -2.39 -0.02 0.54 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 1.58 7.69 -2.39 -0.02 1.56 16 41 H 0.04 0.92 6.34 -2.39 -0.02 0.91 16 42 H 0.22 5.42 8.06 -2.91 -0.02 5.39 16 43 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 2.73 7.01 -2.39 -0.02 2.72 16 45 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -65.74 378.30 2.15 -63.59 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 1.00 Total: 16.92 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.23 Total: 4.31 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -5.73 Total: -93.44 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.10 Total: -27.19 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.27 Total: -8.61 kcal Total: -65.74 2.15 -63.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892840344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.423 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds