Wall clock time and date at job start Sat Apr 11 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38129 * 126.28905 * 2 1 4 4 C 1.47276 * 126.43137 * 0.02562 * 3 2 1 5 5 O 1.21523 * 120.00410 * 0.02562 * 4 3 2 6 6 O 1.34762 * 120.00098 * 179.97438 * 4 3 2 7 7 C 1.45196 * 116.99982 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47100 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.47116 * 179.97438 * 8 7 6 10 10 C 1.38360 * 119.84850 * 269.72531 * 9 8 7 11 11 C 1.37950 * 120.14981 * 179.76614 * 10 9 8 12 12 C 1.39638 * 119.84397 * 0.52773 * 11 10 9 13 13 C 1.43195 * 120.14642 * 179.69987 * 12 11 10 14 14 N 9.78314 * 138.58757 * 180.02562 * 4 1 2 15 15 C 1.39626 * 119.70008 * 359.72977 * 12 11 10 16 16 C 1.37946 * 119.84692 * 359.97438 * 15 12 11 17 17 C 1.41346 * 107.14173 * 180.27992 * 3 2 1 18 18 N 1.30430 * 108.01329 * 359.55506 * 17 3 2 19 19 N 1.34216 * 126.30140 * 180.02562 * 2 1 3 20 20 C 1.46510 * 125.74100 * 359.94766 * 19 2 1 21 21 C 1.50694 * 109.46924 * 89.99671 * 20 19 2 22 22 H 1.08002 * 120.00557 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99900 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00254 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99966 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46860 * 89.99867 * 25 23 21 27 27 H 1.48502 * 109.47432 * 209.99650 * 25 23 21 28 28 H 1.48506 * 109.47328 * 329.99947 * 25 23 21 29 29 H 1.08998 * 109.46526 * 89.98185 * 1 2 3 30 30 H 1.09001 * 109.46730 * 209.97748 * 1 2 3 31 31 H 1.08998 * 109.47584 * 329.97815 * 1 2 3 32 32 H 1.09000 * 109.47395 * 60.00076 * 7 6 4 33 33 H 1.09008 * 109.47495 * 300.00583 * 7 6 4 34 34 H 1.09000 * 109.46884 * 60.00522 * 8 7 6 35 35 H 1.09000 * 109.46955 * 299.99837 * 8 7 6 36 36 H 1.07991 * 119.92539 * 0.02562 * 10 9 8 37 37 H 1.08003 * 120.07847 * 180.25573 * 11 10 9 38 38 H 1.08006 * 120.07791 * 179.97438 * 15 12 11 39 39 H 1.08002 * 119.92602 * 180.02562 * 16 15 12 40 40 H 1.07999 * 125.99718 * 179.73354 * 17 3 2 41 41 H 1.08999 * 109.47166 * 209.99626 * 20 19 2 42 42 H 1.08999 * 109.46814 * 329.99681 * 20 19 2 43 43 H 0.96994 * 119.99924 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1134 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7873 0.0015 6 8 2.8013 3.5097 0.0010 7 6 2.2981 4.8717 0.0021 8 6 3.4744 5.8501 0.0018 9 6 2.9520 7.2637 0.0023 10 6 2.7182 7.9119 -1.1975 11 6 2.2355 9.2042 -1.2044 12 6 1.9933 9.8619 0.0034 13 6 1.4984 11.2056 0.0038 14 7 1.1057 12.2715 0.0055 15 6 2.2365 9.2036 1.2105 16 6 2.7134 7.9092 1.2027 17 6 3.6598 0.6498 -0.0066 18 7 3.6340 -0.6543 -0.0006 19 7 2.3016 -1.0817 -0.0005 20 6 1.8499 -2.4754 0.0000 21 6 1.6939 -2.9533 -1.4206 22 1 1.9101 -2.2859 -2.2418 23 6 1.2763 -4.2430 -1.6722 24 7 1.1406 -4.6603 -2.9120 25 14 0.9032 -5.3977 -0.2520 26 1 -0.5277 -5.2723 0.1249 27 1 1.1860 -6.7962 -0.6636 28 1 1.7546 -5.0423 0.9117 29 1 -0.3632 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8897 0.5141 32 1 1.6904 5.0338 0.8923 33 1 1.6898 5.0351 -0.8876 34 1 4.0816 5.6879 -0.8887 35 1 4.0828 5.6869 0.8913 36 1 2.9101 7.4035 -2.1308 37 1 2.0495 9.7076 -2.1416 38 1 2.0517 9.7067 2.1482 39 1 2.9016 7.3987 2.1356 40 1 4.5460 1.2670 -0.0124 41 1 2.5849 -3.0954 0.5133 42 1 0.8917 -2.5465 0.5146 43 1 0.8465 -5.5675 -3.0889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893221721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:05 Heat of formation + Delta-G solvation = 31.993782 kcal Electronic energy + Delta-G solvation = -26573.510813 eV Core-core repulsion = 22585.297302 eV Total energy + Delta-G solvation = -3988.213511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01497 -40.19742 -39.59074 -37.06642 -36.28723 -34.07377 -33.87607 -32.27684 -31.63650 -31.46466 -29.85138 -28.09720 -26.97233 -24.98750 -23.32899 -23.29462 -22.41112 -21.83318 -20.36926 -19.43218 -18.98966 -17.51036 -17.28093 -16.65276 -16.42009 -15.90982 -15.89200 -15.23577 -15.01618 -14.82964 -14.51738 -14.31202 -14.09033 -13.89700 -13.72792 -13.49754 -13.38656 -13.16718 -12.90454 -12.70772 -12.55926 -12.39096 -12.17903 -12.02496 -12.00482 -11.79106 -11.73058 -11.52519 -11.28443 -10.88971 -10.53260 -10.49807 -10.38197 -9.94268 -9.83211 -9.57006 -9.28758 -8.89691 -8.75978 -8.17447 -6.37621 -4.43050 0.20935 0.80183 1.81157 2.21619 2.39320 2.59660 2.72490 3.06265 3.13309 3.14797 3.25705 3.38307 3.40625 3.57812 4.11332 4.24924 4.31427 4.35423 4.67952 4.71686 4.80551 4.88309 4.95149 5.02515 5.08721 5.10577 5.24055 5.35717 5.36228 5.50764 5.50999 5.64813 5.67567 5.75694 5.84678 5.93191 6.02563 6.16126 6.25802 6.27080 6.38488 6.49111 6.64240 6.95245 7.02420 7.12140 7.42675 8.07265 8.13803 8.22041 8.65040 9.15769 10.74466 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.001652 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.293563 B =16947.517952 C =17096.467928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.176 3.824 3 C -0.317 4.317 4 C 0.553 3.447 5 O -0.528 6.528 6 O -0.356 6.356 7 C 0.075 3.925 8 C -0.086 4.086 9 C -0.050 4.050 10 C -0.113 4.113 11 C -0.067 4.067 12 C -0.034 4.034 13 C 0.255 3.745 14 N -0.419 5.419 15 C -0.068 4.068 16 C -0.113 4.113 17 C 0.084 3.916 18 N -0.294 5.294 19 N -0.310 5.310 20 C 0.224 3.776 21 C -0.548 4.548 22 H 0.082 0.918 23 C 0.083 3.917 24 N -0.881 5.881 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.188 0.812 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 22.572 7.955 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.038 3.962 3 C -0.330 4.330 4 C 0.400 3.600 5 O -0.418 6.418 6 O -0.273 6.273 7 C 0.000 4.000 8 C -0.124 4.124 9 C -0.051 4.051 10 C -0.131 4.131 11 C -0.088 4.088 12 C -0.037 4.037 13 C -0.060 4.060 14 N -0.094 5.094 15 C -0.088 4.088 16 C -0.131 4.131 17 C -0.104 4.104 18 N -0.113 5.113 19 N -0.086 5.086 20 C 0.106 3.894 21 C -0.586 4.586 22 H 0.100 0.900 23 C -0.123 4.123 24 N -0.517 5.517 25 Si 0.698 3.302 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.204 0.796 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.236 22.900 7.838 24.420 hybrid contribution -0.581 -0.315 0.444 0.796 sum 2.655 22.585 8.282 24.202 Atomic orbital electron populations 1.20651 0.86462 1.03926 1.04515 1.21451 0.94976 0.86350 0.93387 1.18808 0.93747 0.89326 1.31100 1.19980 0.83349 0.84846 0.71812 1.90772 1.17954 1.84507 1.48602 1.86505 1.40026 1.15577 1.85219 1.22853 0.95886 0.78217 1.03022 1.20604 0.97492 0.88830 1.05436 1.19964 0.96460 0.95351 0.93286 1.21095 0.99298 0.94295 0.98368 1.21202 0.96246 0.94579 0.96741 1.16027 1.05406 0.87162 0.95152 1.25751 0.93609 0.92827 0.93863 1.81278 1.09183 1.11770 1.07188 1.21186 0.96355 0.94554 0.96724 1.21078 0.99441 0.94284 0.98310 1.23952 0.96704 0.92026 0.97675 1.77228 0.97698 1.12494 1.23858 1.48958 1.02906 1.07549 1.49163 1.20205 0.95838 0.73043 1.00357 1.21076 1.48313 0.99289 0.89920 0.89966 1.24784 0.94226 0.97372 0.95887 1.69858 1.44917 1.18277 1.18695 0.86909 0.79518 0.81108 0.82669 1.19485 1.20302 1.18756 0.89126 0.90700 0.88693 0.91109 0.91046 0.89074 0.89130 0.84477 0.84798 0.84836 0.84541 0.79557 0.92500 0.93307 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.57 36.01 0.34 -1.24 16 2 C 0.18 3.33 7.01 -81.59 -0.57 2.76 16 3 C -0.32 -5.51 6.13 -105.08 -0.64 -6.16 16 4 C 0.55 8.67 7.95 34.40 0.27 8.94 16 5 O -0.53 -9.01 14.63 -19.28 -0.28 -9.30 16 6 O -0.36 -4.44 10.07 -40.66 -0.41 -4.85 16 7 C 0.07 0.68 5.46 37.16 0.20 0.88 16 8 C -0.09 -0.50 5.72 -27.88 -0.16 -0.66 16 9 C -0.05 -0.26 5.14 -104.53 -0.54 -0.80 16 10 C -0.11 -0.56 9.68 -39.64 -0.38 -0.94 16 11 C -0.07 -0.34 9.76 -39.16 -0.38 -0.72 16 12 C -0.03 -0.20 5.73 -106.93 -0.61 -0.82 16 13 C 0.25 2.07 15.33 -22.48 -0.34 1.73 16 14 N -0.42 -4.48 18.54 41.84 0.78 -3.71 16 15 C -0.07 -0.34 9.76 -39.17 -0.38 -0.72 16 16 C -0.11 -0.54 9.68 -39.64 -0.38 -0.92 16 17 C 0.08 1.42 11.87 -16.97 -0.20 1.22 16 18 N -0.29 -6.01 12.50 30.87 0.39 -5.62 16 19 N -0.31 -6.56 3.56 -57.76 -0.21 -6.77 16 20 C 0.22 5.01 5.03 -5.19 -0.03 4.98 16 21 C -0.55 -14.56 9.94 -34.44 -0.34 -14.91 16 22 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.88 -25.22 13.96 55.43 0.77 -24.45 16 25 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.07 1.13 7.05 -51.93 -0.37 0.77 16 31 H 0.09 1.44 6.50 -51.93 -0.34 1.10 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.09 0.48 8.08 -51.93 -0.42 0.07 16 35 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.19 2.38 8.06 -52.49 -0.42 1.95 16 41 H 0.06 1.28 7.20 -51.93 -0.37 0.90 16 42 H 0.05 0.99 6.44 -51.93 -0.33 0.66 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -32.45 385.12 -7.30 -39.74 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.22 Total: -0.07 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.25 Total: -5.29 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.73 Total: -40.54 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.69 Total: -14.14 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.45 -7.30 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893221721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.738 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds