Wall clock time and date at job start Sat Apr 11 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35966 * 117.00392 * 2 1 4 4 C 1.37560 * 120.83148 * 180.02562 * 3 2 1 5 5 C 1.38045 * 114.25483 * 179.97438 * 4 3 2 6 6 C 1.47109 * 127.75956 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00461 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99586 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99881 * 179.97438 * 8 6 5 10 10 H 1.09011 * 109.45686 * 34.98122 * 9 8 6 11 11 C 1.53034 * 109.46404 * 275.00790 * 9 8 6 12 12 C 1.53190 * 109.33836 * 178.60132 * 11 9 8 13 13 N 1.46997 * 108.74384 * 54.61767 * 12 11 9 14 14 C 1.36933 * 120.61559 * 126.38485 * 13 12 11 15 15 H 1.07999 * 120.00529 * 331.86777 * 14 13 12 16 16 C 1.38812 * 120.00008 * 151.86140 * 14 13 12 17 17 N 1.31622 * 119.99895 * 343.06618 * 16 14 13 18 18 Si 1.86799 * 120.00244 * 163.06586 * 16 14 13 19 19 H 1.48496 * 109.46914 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47288 * 120.00168 * 18 16 14 21 21 H 1.48500 * 109.47123 * 240.00645 * 18 16 14 22 22 C 1.46924 * 118.75136 * 306.41079 * 13 12 11 23 23 C 1.53037 * 109.45862 * 154.93044 * 9 8 6 24 24 C 1.52998 * 109.50305 * 301.34389 * 23 9 8 25 25 C 1.53009 * 109.49359 * 61.40643 * 23 9 8 26 26 S 1.77238 * 104.47445 * 0.25512 * 5 4 3 27 27 N 1.30361 * 120.82019 * 359.97086 * 3 2 1 28 28 H 1.09003 * 109.47035 * 300.00135 * 1 2 3 29 29 H 1.08997 * 109.46822 * 60.00551 * 1 2 3 30 30 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.08006 * 122.87308 * 359.96624 * 4 3 2 32 32 H 0.96999 * 119.99977 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.49697 * 298.56286 * 11 9 8 34 34 H 1.08999 * 109.49956 * 58.62998 * 11 9 8 35 35 H 1.09000 * 109.58679 * 174.43601 * 12 11 9 36 36 H 1.09000 * 109.58777 * 294.85393 * 12 11 9 37 37 H 0.97004 * 120.00038 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58703 * 293.81606 * 22 13 12 39 39 H 1.08998 * 109.69929 * 173.46506 * 22 13 12 40 40 H 1.09002 * 109.46925 * 59.99780 * 24 23 9 41 41 H 1.08999 * 109.47079 * 179.97438 * 24 23 9 42 42 H 1.08996 * 109.47079 * 299.99869 * 24 23 9 43 43 H 1.09004 * 109.46737 * 60.00039 * 25 23 9 44 44 H 1.09004 * 109.46991 * 179.97438 * 25 23 9 45 45 H 1.08997 * 109.47021 * 299.99817 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 -0.0005 5 6 3.9007 2.5969 -0.0010 6 6 5.3050 3.0351 -0.0011 7 8 6.1993 2.2109 -0.0012 8 7 5.6004 4.3502 -0.0022 9 6 6.9989 4.7867 -0.0017 10 1 7.5968 4.0904 -0.5900 11 6 7.5223 4.8197 1.4360 12 6 8.9946 5.2428 1.4302 13 7 9.1162 6.5204 0.7135 14 6 9.7321 7.5934 1.3004 15 1 9.7287 7.6965 2.3755 16 6 10.3611 8.5485 0.5136 17 7 10.6615 8.2756 -0.7385 18 14 10.7812 10.2210 1.2318 19 1 10.3423 10.2753 2.6494 20 1 12.2487 10.4361 1.1598 21 1 10.0868 11.2808 0.4572 22 6 8.5639 6.6246 -0.6440 23 6 7.0965 6.1857 -0.6143 24 6 6.5426 6.1586 -2.0403 25 6 6.2851 7.1706 0.2300 26 16 2.4471 3.6110 0.0069 27 7 1.3521 2.3148 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0643 0.4373 -0.0004 32 1 4.8872 5.0075 -0.0025 33 1 6.9407 5.5344 2.0185 34 1 7.4303 3.8283 1.8795 35 1 9.3441 5.3634 2.4556 36 1 9.5912 4.4827 0.9258 37 1 11.1007 8.9432 -1.2884 38 1 9.1254 5.9773 -1.3176 39 1 8.6298 7.6563 -0.9893 40 1 5.4994 5.8436 -2.0189 41 1 6.6120 7.1554 -2.4760 42 1 7.1216 5.4578 -2.6417 43 1 6.6808 7.1904 1.2455 44 1 6.3552 8.1670 -0.2065 45 1 5.2417 6.8560 0.2526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940754356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:15 Heat of formation + Delta-G solvation = -3.706231 kcal Electronic energy + Delta-G solvation = -27764.565465 eV Core-core repulsion = 23910.247836 eV Total energy + Delta-G solvation = -3854.317629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.58013 -40.06247 -38.24988 -36.69720 -34.70589 -33.01191 -32.15122 -31.51926 -29.52823 -28.36851 -26.82156 -26.09718 -25.76044 -24.39462 -22.60105 -21.37755 -20.63565 -20.20374 -18.98357 -18.24215 -17.82037 -16.96817 -16.58970 -16.20235 -15.89898 -15.11073 -15.03707 -14.88972 -14.33308 -13.99816 -13.82442 -13.69411 -13.58131 -13.42785 -13.21257 -12.75368 -12.42458 -12.36002 -11.76650 -11.69630 -11.54250 -11.49053 -11.35925 -11.18613 -11.10751 -10.92454 -10.71463 -10.63929 -10.31960 -10.18748 -10.12375 -10.02339 -10.00667 -9.71992 -9.50204 -8.85124 -8.72647 -8.49007 -6.70263 -5.82179 -3.24252 -0.14860 0.84532 1.20738 1.92435 2.59204 2.95545 3.18515 3.34960 3.43639 3.45120 4.30525 4.46875 4.68884 4.76610 4.85741 4.92962 5.11649 5.16880 5.23028 5.35638 5.39708 5.49749 5.52912 5.73503 5.79787 5.88323 6.01886 6.03607 6.11133 6.25237 6.34547 6.38322 6.42765 6.55124 6.64321 6.65618 6.77881 6.83603 6.93293 6.99481 7.27181 7.41179 7.60927 7.77943 8.04545 8.41632 9.17990 9.80929 10.37799 11.26546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.002526 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.922795 B =11083.071500 C =11345.788140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.294 6.294 3 C 0.306 3.694 4 C -0.133 4.133 5 C -0.172 4.172 6 C 0.587 3.413 7 O -0.514 6.514 8 N -0.706 5.706 9 C 0.163 3.837 10 H 0.087 0.913 11 C -0.144 4.144 12 C 0.147 3.853 13 N -0.590 5.590 14 C -0.249 4.249 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.899 3.101 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.187 3.813 23 C -0.098 4.098 24 C -0.136 4.136 25 C -0.129 4.129 26 S 0.284 5.716 27 N -0.512 5.512 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.179 0.821 32 H 0.396 0.604 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.094 0.906 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.323 -11.061 -0.172 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.200 6.200 3 C 0.093 3.907 4 C -0.170 4.170 5 C -0.304 4.304 6 C 0.370 3.630 7 O -0.391 6.391 8 N -0.357 5.357 9 C 0.060 3.940 10 H 0.105 0.895 11 C -0.185 4.185 12 C 0.020 3.980 13 N -0.311 5.311 14 C -0.379 4.379 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.060 3.940 23 C -0.100 4.100 24 C -0.194 4.194 25 C -0.186 4.186 26 S 0.433 5.567 27 N -0.354 5.354 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.196 0.804 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.913 -10.194 -0.269 22.372 hybrid contribution 0.499 -0.237 0.240 0.603 sum -19.413 -10.432 -0.029 22.038 Atomic orbital electron populations 1.22997 0.76623 1.03704 1.02614 1.86320 1.23063 1.22474 1.88159 1.19923 0.89820 0.85296 0.95677 1.20780 0.92308 0.98709 1.05239 1.26197 0.99606 0.97599 1.07021 1.16692 0.84995 0.83504 0.77824 1.90859 1.46457 1.52555 1.49189 1.46266 1.10654 1.05486 1.73308 1.21166 0.78864 0.96232 0.97714 0.89528 1.22478 0.99994 1.00533 0.95453 1.20891 0.91597 0.88748 0.96747 1.44074 1.65205 1.07460 1.14406 1.19188 1.27855 0.99325 0.91530 0.91632 1.25033 0.97986 0.99908 0.96601 1.70029 1.43602 1.33417 1.07563 0.86267 0.77697 0.84538 0.78554 1.20276 1.21781 1.21592 1.20826 0.85000 1.01981 0.86210 1.21602 1.01476 0.92824 0.94105 1.21786 0.99385 1.01859 0.96354 1.21772 0.96412 0.98696 1.01741 1.85009 0.90174 1.12167 1.69374 1.76445 1.26641 1.01035 1.31239 0.92066 0.92063 0.87913 0.80404 0.76841 0.91617 0.92580 0.92411 0.96098 0.93659 0.96117 0.88773 0.93888 0.92355 0.92888 0.90931 0.92673 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.43 101.05 1.05 1.30 16 2 O -0.29 -2.92 10.51 -19.63 -0.21 -3.13 16 3 C 0.31 3.38 7.36 -18.42 -0.14 3.24 16 4 C -0.13 -1.49 10.09 -39.90 -0.40 -1.90 16 5 C -0.17 -2.03 6.74 -36.05 -0.24 -2.28 16 6 C 0.59 8.33 7.77 -12.66 -0.10 8.23 16 7 O -0.51 -8.98 16.61 5.26 0.09 -8.89 16 8 N -0.71 -9.54 4.28 -54.94 -0.24 -9.78 16 9 C 0.16 2.65 1.57 -67.90 -0.11 2.55 16 10 H 0.09 1.59 7.57 -51.92 -0.39 1.20 16 11 C -0.14 -2.47 5.31 -26.62 -0.14 -2.61 16 12 C 0.15 2.99 6.52 -3.67 -0.02 2.97 16 13 N -0.59 -13.82 2.43 -172.27 -0.42 -14.24 16 14 C -0.25 -6.48 9.58 -15.06 -0.14 -6.63 16 15 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -25.17 11.19 55.49 0.62 -24.55 16 18 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.19 4.11 3.98 -3.71 -0.01 4.09 16 23 C -0.10 -1.65 0.56 -154.39 -0.09 -1.73 16 24 C -0.14 -2.01 8.31 37.16 0.31 -1.70 16 25 C -0.13 -2.06 7.83 37.16 0.29 -1.76 16 26 S 0.28 2.88 23.27 -107.50 -2.50 0.38 16 27 N -0.51 -5.74 11.03 29.19 0.32 -5.42 16 28 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 29 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.18 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.40 4.57 6.02 -40.82 -0.25 4.33 16 33 H 0.07 1.10 6.34 -51.92 -0.33 0.78 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 40 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.29 5.98 -51.93 -0.31 0.98 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -29.69 372.56 -8.08 -37.77 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.50 Total: 2.49 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.17 Total: 3.77 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.29 Total: -53.98 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.12 Total: -12.02 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.50 Total: 0.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.69 -8.08 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940754356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.064 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds