Wall clock time and date at job start Sat Apr 11 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35966 * 117.00392 * 2 1 4 4 C 1.37560 * 120.83148 * 180.02562 * 3 2 1 5 5 C 1.38045 * 114.25483 * 179.97438 * 4 3 2 6 6 C 1.47109 * 127.75956 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00461 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99586 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99881 * 179.97438 * 8 6 5 10 10 H 1.09011 * 109.45686 * 34.98122 * 9 8 6 11 11 C 1.53034 * 109.46404 * 275.00790 * 9 8 6 12 12 C 1.53190 * 109.33836 * 178.60132 * 11 9 8 13 13 N 1.46997 * 108.74384 * 54.61767 * 12 11 9 14 14 C 1.36933 * 120.61559 * 126.38485 * 13 12 11 15 15 H 1.07999 * 120.00529 * 331.86777 * 14 13 12 16 16 C 1.38812 * 120.00008 * 151.86140 * 14 13 12 17 17 N 1.31622 * 119.99895 * 343.06618 * 16 14 13 18 18 Si 1.86799 * 120.00244 * 163.06586 * 16 14 13 19 19 H 1.48496 * 109.46914 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47288 * 120.00168 * 18 16 14 21 21 H 1.48500 * 109.47123 * 240.00645 * 18 16 14 22 22 C 1.46924 * 118.75136 * 306.41079 * 13 12 11 23 23 C 1.53037 * 109.45862 * 154.93044 * 9 8 6 24 24 C 1.52998 * 109.50305 * 301.34389 * 23 9 8 25 25 C 1.53009 * 109.49359 * 61.40643 * 23 9 8 26 26 S 1.77238 * 104.47445 * 0.25512 * 5 4 3 27 27 N 1.30361 * 120.82019 * 359.97086 * 3 2 1 28 28 H 1.09003 * 109.47035 * 300.00135 * 1 2 3 29 29 H 1.08997 * 109.46822 * 60.00551 * 1 2 3 30 30 H 1.08997 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.08006 * 122.87308 * 359.96624 * 4 3 2 32 32 H 0.96999 * 119.99977 * 0.02562 * 8 6 5 33 33 H 1.09008 * 109.49697 * 298.56286 * 11 9 8 34 34 H 1.08999 * 109.49956 * 58.62998 * 11 9 8 35 35 H 1.09000 * 109.58679 * 174.43601 * 12 11 9 36 36 H 1.09000 * 109.58777 * 294.85393 * 12 11 9 37 37 H 0.97004 * 120.00038 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.58703 * 293.81606 * 22 13 12 39 39 H 1.08998 * 109.69929 * 173.46506 * 22 13 12 40 40 H 1.09002 * 109.46925 * 59.99780 * 24 23 9 41 41 H 1.08999 * 109.47079 * 179.97438 * 24 23 9 42 42 H 1.08996 * 109.47079 * 299.99869 * 24 23 9 43 43 H 1.09004 * 109.46737 * 60.00039 * 25 23 9 44 44 H 1.09004 * 109.46991 * 179.97438 * 25 23 9 45 45 H 1.08997 * 109.47021 * 299.99817 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4189 1.3032 -0.0005 5 6 3.9007 2.5969 -0.0010 6 6 5.3050 3.0351 -0.0011 7 8 6.1993 2.2109 -0.0012 8 7 5.6004 4.3502 -0.0022 9 6 6.9989 4.7867 -0.0017 10 1 7.5968 4.0904 -0.5900 11 6 7.5223 4.8197 1.4360 12 6 8.9946 5.2428 1.4302 13 7 9.1162 6.5204 0.7135 14 6 9.7321 7.5934 1.3004 15 1 9.7287 7.6965 2.3755 16 6 10.3611 8.5485 0.5136 17 7 10.6615 8.2756 -0.7385 18 14 10.7812 10.2210 1.2318 19 1 10.3423 10.2753 2.6494 20 1 12.2487 10.4361 1.1598 21 1 10.0868 11.2808 0.4572 22 6 8.5639 6.6246 -0.6440 23 6 7.0965 6.1857 -0.6143 24 6 6.5426 6.1586 -2.0403 25 6 6.2851 7.1706 0.2300 26 16 2.4471 3.6110 0.0069 27 7 1.3521 2.3148 -0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 4.0643 0.4373 -0.0004 32 1 4.8872 5.0075 -0.0025 33 1 6.9407 5.5344 2.0185 34 1 7.4303 3.8283 1.8795 35 1 9.3441 5.3634 2.4556 36 1 9.5912 4.4827 0.9258 37 1 11.1007 8.9432 -1.2884 38 1 9.1254 5.9773 -1.3176 39 1 8.6298 7.6563 -0.9893 40 1 5.4994 5.8436 -2.0189 41 1 6.6120 7.1554 -2.4760 42 1 7.1216 5.4578 -2.6417 43 1 6.6808 7.1904 1.2455 44 1 6.3552 8.1670 -0.2065 45 1 5.2417 6.8560 0.2526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940754356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:14 Heat of formation + Delta-G solvation = -23.539314 kcal Electronic energy + Delta-G solvation = -27765.425492 eV Core-core repulsion = 23910.247836 eV Total energy + Delta-G solvation = -3855.177656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58490 -41.11935 -39.61760 -37.51817 -36.31186 -34.40816 -33.83628 -32.55617 -31.14115 -29.05142 -28.12635 -27.58708 -27.23677 -25.67505 -23.97952 -22.50600 -22.27167 -21.25027 -19.99221 -19.48159 -18.89985 -18.54396 -17.32928 -17.29086 -17.17981 -16.75208 -16.22651 -15.88653 -15.65945 -15.47314 -15.20784 -14.98026 -14.90040 -14.50941 -14.47972 -14.24054 -13.82657 -13.25710 -13.04707 -13.00098 -12.87162 -12.71239 -12.62200 -12.57535 -12.38202 -12.32346 -12.13814 -12.00654 -11.88093 -11.80311 -11.66000 -11.40094 -11.30869 -11.07579 -10.92409 -10.51462 -10.11539 -9.49315 -8.64494 -7.83748 -5.28294 -1.04905 0.00361 0.38943 1.05494 1.48183 1.51419 1.60710 1.66712 1.88119 2.26553 2.54149 3.31518 3.39525 3.65894 3.70653 3.79690 3.97438 4.08516 4.11516 4.30116 4.35965 4.36045 4.45947 4.53790 4.60212 4.65924 4.72413 4.81371 4.88577 4.95139 4.96726 4.99791 5.06999 5.11838 5.24131 5.33149 5.35192 5.45160 5.47161 5.64974 5.73384 5.77996 5.93053 6.30954 6.43339 6.93792 7.18975 7.88555 8.41310 9.23016 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.002526 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.922795 B =11083.071500 C =11345.788140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.303 3.697 4 C -0.130 4.130 5 C -0.188 4.188 6 C 0.594 3.406 7 O -0.551 6.551 8 N -0.695 5.695 9 C 0.175 3.825 10 H 0.065 0.935 11 C -0.131 4.131 12 C 0.144 3.856 13 N -0.603 5.603 14 C -0.252 4.252 15 H 0.067 0.933 16 C -0.048 4.048 17 N -0.934 5.934 18 Si 0.961 3.039 19 H -0.267 1.267 20 H -0.298 1.298 21 H -0.289 1.289 22 C 0.195 3.805 23 C -0.088 4.088 24 C -0.132 4.132 25 C -0.124 4.124 26 S 0.328 5.672 27 N -0.522 5.522 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.130 0.870 31 H 0.182 0.818 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.007 0.993 37 H 0.249 0.751 38 H -0.011 1.011 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.246 -11.206 0.521 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.209 6.209 3 C 0.090 3.910 4 C -0.168 4.168 5 C -0.320 4.320 6 C 0.378 3.622 7 O -0.429 6.429 8 N -0.346 5.346 9 C 0.071 3.929 10 H 0.083 0.917 11 C -0.171 4.171 12 C 0.018 3.982 13 N -0.326 5.326 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.243 4.243 17 N -0.580 5.580 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.225 1.225 21 H -0.216 1.216 22 C 0.068 3.932 23 C -0.090 4.090 24 C -0.190 4.190 25 C -0.181 4.181 26 S 0.478 5.522 27 N -0.365 5.365 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.199 0.801 32 H 0.247 0.753 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.007 0.993 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.889 -10.342 0.441 25.121 hybrid contribution 1.365 -0.282 0.036 1.394 sum -21.525 -10.624 0.477 24.008 Atomic orbital electron populations 1.23252 0.74982 1.05613 1.02576 1.86322 1.24705 1.21973 1.87930 1.19904 0.89749 0.85657 0.95720 1.20882 0.92648 0.98774 1.04455 1.25827 0.98940 0.98548 1.08709 1.16856 0.85655 0.83012 0.76653 1.90848 1.47929 1.53420 1.50741 1.45951 1.09619 1.05834 1.73223 1.20773 0.80231 0.95243 0.96682 0.91726 1.22288 0.97559 1.00980 0.96251 1.20978 0.93872 0.87189 0.96199 1.44294 1.65386 1.08060 1.14840 1.19469 1.27118 0.99946 0.91722 0.91568 1.25719 0.98611 1.02958 0.97017 1.70183 1.44947 1.34146 1.08767 0.85296 0.76739 0.80633 0.78309 1.19113 1.22500 1.21620 1.20608 0.88054 0.99545 0.84955 1.21363 0.98080 0.93408 0.96127 1.21758 1.00915 1.01868 0.94460 1.21709 0.98350 0.97982 1.00058 1.84811 0.88296 1.10812 1.68257 1.76390 1.27301 1.01537 1.31274 0.92063 0.92055 0.85151 0.80085 0.75284 0.90568 0.91839 0.92250 0.97472 0.94198 0.99320 0.91762 0.90758 0.92371 0.93666 0.92725 0.93474 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.43 113.37 1.18 1.52 16 2 O -0.30 -5.42 10.51 -93.16 -0.98 -6.40 16 3 C 0.30 6.05 7.36 84.75 0.62 6.67 16 4 C -0.13 -2.68 10.09 22.06 0.22 -2.46 16 5 C -0.19 -4.04 6.74 24.55 0.17 -3.87 16 6 C 0.59 15.83 7.77 86.57 0.67 16.50 16 7 O -0.55 -18.85 16.61 -4.10 -0.07 -18.92 16 8 N -0.69 -17.20 4.28 -445.99 -1.91 -19.11 16 9 C 0.17 5.54 1.57 45.02 0.07 5.61 16 10 H 0.06 2.39 7.57 -2.38 -0.02 2.37 16 11 C -0.13 -4.36 5.31 30.67 0.16 -4.20 16 12 C 0.14 5.93 6.52 86.35 0.56 6.49 16 13 N -0.60 -28.91 2.43 -698.93 -1.70 -30.61 16 14 C -0.25 -13.30 9.58 84.03 0.81 -12.49 16 15 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 16 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 17 N -0.93 -53.87 11.19 21.65 0.24 -53.63 16 18 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.19 8.86 3.98 86.36 0.34 9.20 16 23 C -0.09 -2.90 0.56 -52.10 -0.03 -2.93 16 24 C -0.13 -3.72 8.31 71.98 0.60 -3.13 16 25 C -0.12 -3.70 7.83 71.99 0.56 -3.14 16 26 S 0.33 5.65 23.27 -56.49 -1.31 4.34 16 27 N -0.52 -10.40 11.03 -175.21 -1.93 -12.33 16 28 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 30 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.41 7.97 6.02 -92.71 -0.56 7.42 16 33 H 0.08 2.41 6.34 -2.38 -0.02 2.40 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 2.38 7.94 -2.39 -0.02 2.36 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.06 3.32 6.06 -2.39 -0.01 3.30 16 40 H 0.07 1.63 7.36 -2.39 -0.02 1.61 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.85 5.98 -2.39 -0.01 1.83 16 44 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.07 1.51 6.58 -2.39 -0.02 1.49 16 Total: -1.00 -65.64 372.56 1.19 -64.45 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.46 Total: 14.80 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.36 Total: 11.63 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.30 Total: -115.67 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.05 Total: -25.33 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.31 Total: 4.34 kcal Total: -65.64 1.19 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940754356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.916 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds