Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99835 * 2 1 4 4 C 1.50700 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90848 * 270.19118 * 4 3 2 6 6 C 1.29429 * 117.36553 * 180.35048 * 5 4 3 7 7 S 1.70951 * 110.38929 * 359.70983 * 6 5 4 8 8 C 1.35666 * 122.90156 * 90.00369 * 4 3 2 9 9 C 1.46686 * 126.13021 * 359.96248 * 8 4 3 10 10 O 1.21682 * 119.99992 * 359.71308 * 9 8 4 11 11 N 1.34771 * 119.99571 * 179.71371 * 9 8 4 12 12 C 1.46505 * 119.99559 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.64189 * 325.70536 * 12 11 9 14 14 C 1.54323 * 110.71829 * 88.84680 * 12 11 9 15 15 N 1.47026 * 107.27157 * 96.34403 * 14 12 11 16 16 C 1.36936 * 125.64787 * 178.90122 * 15 14 12 17 17 H 1.08001 * 120.00047 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00176 * 0.03422 * 16 15 14 19 19 N 1.31614 * 119.99764 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47037 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46794 * 119.99600 * 20 18 16 23 23 H 1.48496 * 109.46731 * 239.99725 * 20 18 16 24 24 C 1.47426 * 108.70059 * 358.94531 * 15 14 12 25 25 C 1.55121 * 104.94414 * 23.99909 * 24 15 14 26 26 C 1.53000 * 111.16131 * 205.12786 * 25 24 15 27 27 C 1.53001 * 110.93443 * 81.21644 * 25 24 15 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47377 * 300.00085 * 1 2 3 30 30 H 1.09000 * 109.46622 * 60.00059 * 1 2 3 31 31 H 1.09008 * 109.47310 * 59.99829 * 3 2 1 32 32 H 1.08998 * 109.47849 * 299.99867 * 3 2 1 33 33 H 1.08001 * 124.80534 * 179.69136 * 6 5 4 34 34 H 0.96995 * 120.00838 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.88167 * 215.76540 * 14 12 11 36 36 H 1.09003 * 109.88497 * 336.92898 * 14 12 11 37 37 H 0.97002 * 120.00279 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.36380 * 142.96599 * 24 15 14 39 39 H 1.09004 * 110.36441 * 265.17230 * 24 15 14 40 40 H 1.08995 * 109.47091 * 172.16803 * 26 25 24 41 41 H 1.08997 * 109.47530 * 292.17529 * 26 25 24 42 42 H 1.09011 * 109.46565 * 52.17584 * 26 25 24 43 43 H 1.09002 * 109.47253 * 307.95454 * 27 25 24 44 44 H 1.09002 * 109.46884 * 67.95925 * 27 25 24 45 45 H 1.09002 * 109.46818 * 187.95790 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2209 1.1268 1.1002 6 6 5.5058 1.0325 0.9758 7 16 5.9435 1.0027 -0.6765 8 6 4.2476 1.1281 -1.1381 9 6 3.7248 1.1686 -2.5081 10 8 2.5265 1.2575 -2.6996 11 7 4.5719 1.1074 -3.5545 12 6 4.0497 1.1473 -4.9228 13 1 3.0856 0.6420 -4.9810 14 6 3.9340 2.6034 -5.4207 15 7 5.1481 2.8973 -6.1962 16 6 5.4244 4.0801 -6.8284 17 1 6.3482 4.1971 -7.3754 18 6 4.5172 5.1289 -6.7660 19 7 3.3913 4.9863 -6.0996 20 14 4.8946 6.7428 -7.6278 21 1 6.2146 6.6475 -8.3012 22 1 3.8422 7.0225 -8.6375 23 1 4.9269 7.8413 -6.6292 24 6 6.0181 1.7072 -6.1813 25 6 5.0614 0.5155 -5.9151 26 6 5.8044 -0.6558 -5.2694 27 6 4.3638 0.0760 -7.2039 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 6.2027 0.9803 1.7992 34 1 5.5271 1.0361 -3.4019 35 1 3.0541 2.7093 -6.0552 36 1 3.8642 3.2816 -4.5703 37 1 2.7571 5.7190 -6.0563 38 1 6.5148 1.5884 -7.1443 39 1 6.7553 1.7862 -5.3823 40 1 5.0873 -1.4192 -4.9681 41 1 6.5070 -1.0800 -5.9866 42 1 6.3484 -0.3023 -4.3934 43 1 3.9011 0.9406 -7.6797 44 1 5.0959 -0.3633 -7.8816 45 1 3.5975 -0.6626 -6.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977285255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -0.355018 kcal Electronic energy + Delta-G solvation = -28280.594150 eV Core-core repulsion = 24426.421841 eV Total energy + Delta-G solvation = -3854.172309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46991 -39.47854 -37.80255 -37.43536 -33.94640 -33.09713 -31.43943 -30.72276 -28.79996 -27.67135 -26.77447 -26.07815 -25.64575 -24.59479 -23.59508 -21.69230 -20.12143 -19.68355 -18.68541 -18.49599 -16.82002 -16.72015 -16.47203 -15.95098 -15.48300 -15.17746 -14.99379 -14.81562 -14.49780 -14.00209 -13.95514 -13.86710 -13.61595 -13.25905 -12.98402 -12.60442 -12.29805 -12.10032 -12.00384 -11.70454 -11.58292 -11.42304 -11.30732 -11.10253 -11.01652 -10.81014 -10.42497 -10.28562 -10.10584 -10.04185 -9.89292 -9.81939 -9.67135 -9.64265 -9.37852 -9.12627 -8.66706 -8.52562 -6.84860 -5.71054 -3.05843 0.13885 1.04575 1.42180 2.30595 3.27272 3.35837 3.39179 3.44393 3.47183 3.81320 4.27745 4.48557 4.83711 4.85985 4.91851 5.08277 5.24121 5.26772 5.30826 5.42763 5.51839 5.52639 5.60523 5.63789 5.70014 5.76711 5.89642 5.95490 5.99104 6.13668 6.16600 6.20856 6.34922 6.53610 6.57928 6.63542 6.65563 6.90537 7.14880 7.42809 7.52671 7.60040 7.74057 7.84485 8.23398 8.41317 9.20260 9.80992 10.46105 11.39834 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003670 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.363428 B = 7627.961854 C = 7977.813699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.129 3.871 4 C 0.132 3.868 5 N -0.462 5.462 6 C 0.026 3.974 7 S 0.171 5.829 8 C -0.255 4.255 9 C 0.592 3.408 10 O -0.515 6.515 11 N -0.701 5.701 12 C 0.124 3.876 13 H 0.092 0.908 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.144 3.856 25 C -0.090 4.090 26 C -0.132 4.132 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.206 0.794 34 H 0.393 0.607 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.252 0.748 38 H 0.042 0.958 39 H 0.014 0.986 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -12.247 11.386 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.050 3.950 4 C -0.006 4.006 5 N -0.176 5.176 6 C -0.270 4.270 7 S 0.426 5.574 8 C -0.380 4.380 9 C 0.376 3.624 10 O -0.393 6.393 11 N -0.351 5.351 12 C 0.020 3.980 13 H 0.110 0.890 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.017 3.983 25 C -0.092 4.092 26 C -0.189 4.189 27 C -0.183 4.183 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.223 0.777 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.247 -12.187 11.220 16.881 hybrid contribution -0.247 1.264 -0.098 1.292 sum 3.000 -10.923 11.122 15.875 Atomic orbital electron populations 1.22711 0.80576 1.02583 1.00223 1.87861 1.19905 1.26625 1.95538 1.21035 0.85081 0.86069 1.02771 1.20198 0.97188 0.98006 0.85242 1.66008 1.04996 1.15404 1.31187 1.28637 0.95155 1.02821 1.00405 1.83974 1.05683 1.64454 1.03325 1.25793 0.96325 1.16254 0.99656 1.16566 0.86373 0.77307 0.82133 1.90791 1.14348 1.49573 1.84544 1.45924 1.09409 1.73571 1.06225 1.22578 0.96662 1.00272 0.78523 0.89010 1.21532 0.90146 0.87929 0.95374 1.44442 1.17865 1.10159 1.60429 1.19069 1.02860 0.88405 1.25439 0.90386 1.24802 0.96694 0.98322 1.00465 1.69963 1.09725 1.31528 1.45370 0.86076 0.77374 0.83729 0.78757 1.20537 1.21750 1.21837 1.21669 0.92248 0.86179 0.98191 1.22063 0.96475 0.95163 0.95457 1.21683 0.99833 0.97469 0.99963 1.21596 0.99653 1.01382 0.95669 0.89759 0.94272 0.93375 0.91973 0.88553 0.77705 0.77182 0.92605 0.93347 0.93723 0.93957 0.96800 0.92701 0.92430 0.93268 0.91136 0.92793 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.01 101.05 1.11 1.53 16 2 O -0.38 -5.90 10.69 -35.23 -0.38 -6.28 16 3 C 0.13 1.97 5.74 36.01 0.21 2.18 16 4 C 0.13 2.04 6.42 -83.89 -0.54 1.50 16 5 N -0.46 -6.40 10.50 -11.53 -0.12 -6.52 16 6 C 0.03 0.26 12.22 51.75 0.63 0.90 16 7 S 0.17 1.86 22.35 -107.50 -2.40 -0.54 16 8 C -0.26 -3.93 6.48 -37.09 -0.24 -4.17 16 9 C 0.59 10.63 7.78 -12.85 -0.10 10.53 16 10 O -0.51 -10.64 13.96 5.21 0.07 -10.57 16 11 N -0.70 -11.89 4.51 -53.33 -0.24 -12.13 16 12 C 0.12 2.33 2.54 -66.10 -0.17 2.16 16 13 H 0.09 1.78 7.52 -51.93 -0.39 1.39 16 14 C 0.18 4.24 4.81 -3.06 -0.01 4.22 16 15 N -0.60 -14.76 3.39 -169.93 -0.58 -15.33 16 16 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -27.07 10.31 55.49 0.57 -26.50 16 20 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.14 2.78 6.15 -2.41 -0.01 2.76 16 25 C -0.09 -1.46 0.84 -152.25 -0.13 -1.59 16 26 C -0.13 -1.68 8.22 37.16 0.31 -1.37 16 27 C -0.13 -1.95 8.57 37.16 0.32 -1.63 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.10 1.61 6.02 -51.93 -0.31 1.30 16 33 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.39 5.89 6.19 -40.82 -0.25 5.63 16 35 H 0.06 1.52 7.38 -51.93 -0.38 1.14 16 36 H 0.05 1.35 7.41 -51.93 -0.38 0.96 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 39 H 0.01 0.27 7.99 -51.93 -0.41 -0.15 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.59 6.43 -51.92 -0.33 0.25 16 43 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -33.35 377.38 -7.94 -41.29 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.65 Total: 3.56 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: 1.12 Total: 10.34 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.36 Total: -60.48 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.30 Total: -16.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.40 Total: -0.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.35 -7.94 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977285255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.933 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds