Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99835 * 2 1 4 4 C 1.50700 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.30939 * 122.90848 * 270.19118 * 4 3 2 6 6 C 1.29429 * 117.36553 * 180.35048 * 5 4 3 7 7 S 1.70951 * 110.38929 * 359.70983 * 6 5 4 8 8 C 1.35666 * 122.90156 * 90.00369 * 4 3 2 9 9 C 1.46686 * 126.13021 * 359.96248 * 8 4 3 10 10 O 1.21682 * 119.99992 * 359.71308 * 9 8 4 11 11 N 1.34771 * 119.99571 * 179.71371 * 9 8 4 12 12 C 1.46505 * 119.99559 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.64189 * 325.70536 * 12 11 9 14 14 C 1.54323 * 110.71829 * 88.84680 * 12 11 9 15 15 N 1.47026 * 107.27157 * 96.34403 * 14 12 11 16 16 C 1.36936 * 125.64787 * 178.90122 * 15 14 12 17 17 H 1.08001 * 120.00047 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00176 * 0.03422 * 16 15 14 19 19 N 1.31614 * 119.99764 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47037 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46794 * 119.99600 * 20 18 16 23 23 H 1.48496 * 109.46731 * 239.99725 * 20 18 16 24 24 C 1.47426 * 108.70059 * 358.94531 * 15 14 12 25 25 C 1.55121 * 104.94414 * 23.99909 * 24 15 14 26 26 C 1.53000 * 111.16131 * 205.12786 * 25 24 15 27 27 C 1.53001 * 110.93443 * 81.21644 * 25 24 15 28 28 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47377 * 300.00085 * 1 2 3 30 30 H 1.09000 * 109.46622 * 60.00059 * 1 2 3 31 31 H 1.09008 * 109.47310 * 59.99829 * 3 2 1 32 32 H 1.08998 * 109.47849 * 299.99867 * 3 2 1 33 33 H 1.08001 * 124.80534 * 179.69136 * 6 5 4 34 34 H 0.96995 * 120.00838 * 0.02562 * 11 9 8 35 35 H 1.09000 * 109.88167 * 215.76540 * 14 12 11 36 36 H 1.09003 * 109.88497 * 336.92898 * 14 12 11 37 37 H 0.97002 * 120.00279 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.36380 * 142.96599 * 24 15 14 39 39 H 1.09004 * 110.36441 * 265.17230 * 24 15 14 40 40 H 1.08995 * 109.47091 * 172.16803 * 26 25 24 41 41 H 1.08997 * 109.47530 * 292.17529 * 26 25 24 42 42 H 1.09011 * 109.46565 * 52.17584 * 26 25 24 43 43 H 1.09002 * 109.47253 * 307.95454 * 27 25 24 44 44 H 1.09002 * 109.46884 * 67.95925 * 27 25 24 45 45 H 1.09002 * 109.46818 * 187.95790 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2209 1.1268 1.1002 6 6 5.5058 1.0325 0.9758 7 16 5.9435 1.0027 -0.6765 8 6 4.2476 1.1281 -1.1381 9 6 3.7248 1.1686 -2.5081 10 8 2.5265 1.2575 -2.6996 11 7 4.5719 1.1074 -3.5545 12 6 4.0497 1.1473 -4.9228 13 1 3.0856 0.6420 -4.9810 14 6 3.9340 2.6034 -5.4207 15 7 5.1481 2.8973 -6.1962 16 6 5.4244 4.0801 -6.8284 17 1 6.3482 4.1971 -7.3754 18 6 4.5172 5.1289 -6.7660 19 7 3.3913 4.9863 -6.0996 20 14 4.8946 6.7428 -7.6278 21 1 6.2146 6.6475 -8.3012 22 1 3.8422 7.0225 -8.6375 23 1 4.9269 7.8413 -6.6292 24 6 6.0181 1.7072 -6.1813 25 6 5.0614 0.5155 -5.9151 26 6 5.8044 -0.6558 -5.2694 27 6 4.3638 0.0760 -7.2039 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 6.2027 0.9803 1.7992 34 1 5.5271 1.0361 -3.4019 35 1 3.0541 2.7093 -6.0552 36 1 3.8642 3.2816 -4.5703 37 1 2.7571 5.7190 -6.0563 38 1 6.5148 1.5884 -7.1443 39 1 6.7553 1.7862 -5.3823 40 1 5.0873 -1.4192 -4.9681 41 1 6.5070 -1.0800 -5.9866 42 1 6.3484 -0.3023 -4.3934 43 1 3.9011 0.9406 -7.6797 44 1 5.0959 -0.3633 -7.8816 45 1 3.5975 -0.6626 -6.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977285255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -24.824770 kcal Electronic energy + Delta-G solvation = -28281.655238 eV Core-core repulsion = 24426.421841 eV Total energy + Delta-G solvation = -3855.233397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68353 -40.81312 -39.26639 -38.54284 -35.74265 -34.60848 -32.62856 -32.51185 -30.25656 -28.99383 -28.00276 -27.43332 -27.08971 -25.60490 -25.23983 -23.14730 -21.86831 -20.99271 -19.90840 -19.65961 -18.69087 -18.01826 -17.59363 -17.34617 -16.81553 -16.54928 -16.32373 -16.02887 -15.84338 -15.63798 -15.39548 -15.12825 -14.91182 -14.73497 -14.03632 -13.95817 -13.83411 -13.46422 -13.34765 -13.16297 -12.96724 -12.85305 -12.72569 -12.59553 -12.55385 -12.34514 -12.07662 -11.87138 -11.76537 -11.55590 -11.34713 -11.32423 -10.88324 -10.76197 -10.69238 -10.57137 -10.14419 -10.01731 -8.89563 -7.83912 -5.20374 -0.88521 0.08028 0.47737 1.26426 1.44456 1.45207 1.55664 1.92508 2.03258 2.48929 2.81240 3.29979 3.35153 3.45517 3.65986 3.72765 3.87053 3.94374 4.04074 4.07786 4.33623 4.37434 4.44796 4.49716 4.52267 4.58134 4.67050 4.79844 4.84004 4.86947 4.89635 4.94236 5.02819 5.10775 5.15925 5.25189 5.34374 5.46406 5.54925 5.66872 5.72651 6.08269 6.17280 6.34347 6.50133 7.04074 7.09384 7.77583 8.41809 9.25808 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003670 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.363428 B = 7627.961854 C = 7977.813699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.129 3.871 4 C 0.127 3.873 5 N -0.490 5.490 6 C 0.047 3.953 7 S 0.235 5.765 8 C -0.302 4.302 9 C 0.589 3.411 10 O -0.555 6.555 11 N -0.692 5.692 12 C 0.137 3.863 13 H 0.082 0.918 14 C 0.195 3.805 15 N -0.620 5.620 16 C -0.234 4.234 17 H 0.089 0.911 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.975 3.025 21 H -0.260 1.260 22 H -0.295 1.295 23 H -0.297 1.297 24 C 0.138 3.862 25 C -0.075 4.075 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.256 0.744 34 H 0.405 0.595 35 H 0.009 0.991 36 H 0.000 1.000 37 H 0.243 0.757 38 H 0.051 0.949 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.031 0.969 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -14.163 12.432 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C 0.050 3.950 4 C -0.012 4.012 5 N -0.204 5.204 6 C -0.247 4.247 7 S 0.491 5.509 8 C -0.427 4.427 9 C 0.375 3.625 10 O -0.435 6.435 11 N -0.344 5.344 12 C 0.031 3.969 13 H 0.100 0.900 14 C 0.068 3.932 15 N -0.346 5.346 16 C -0.363 4.363 17 H 0.106 0.894 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.223 1.223 23 H -0.224 1.224 24 C 0.013 3.987 25 C -0.077 4.077 26 C -0.183 4.183 27 C -0.180 4.180 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.271 0.729 34 H 0.242 0.758 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.593 -14.143 12.260 19.845 hybrid contribution -1.196 1.838 -0.360 2.223 sum 5.397 -12.304 11.900 17.948 Atomic orbital electron populations 1.22913 0.78956 1.04025 1.00693 1.87818 1.21815 1.26756 1.95614 1.20951 0.85904 0.86060 1.02084 1.20300 0.97363 0.97582 0.85980 1.66067 1.06409 1.17499 1.30431 1.29547 0.94688 0.98809 1.01696 1.83667 1.01372 1.63020 1.02857 1.25568 0.99753 1.19341 0.98020 1.16989 0.85987 0.76196 0.83376 1.90766 1.16128 1.51140 1.85472 1.45720 1.09930 1.73463 1.05243 1.22193 0.97750 0.96683 0.80227 0.89982 1.21072 0.88811 0.90537 0.92767 1.44686 1.18729 1.11172 1.60023 1.19520 1.02790 0.89377 1.24627 0.89369 1.25646 0.96780 1.01840 1.01827 1.70229 1.10845 1.31940 1.47377 0.85044 0.77750 0.79426 0.77352 1.18408 1.22268 1.22421 1.21934 0.92388 0.85237 0.99134 1.22051 0.95019 0.95499 0.95114 1.21666 1.00155 0.95742 1.00722 1.21589 1.00633 1.00305 0.95515 0.87843 0.92297 0.94396 0.90621 0.91157 0.72871 0.75798 0.97322 0.98145 0.94768 0.93029 0.95188 0.91723 0.89851 0.92157 0.94993 0.90085 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -12.73 10.69 -148.98 -1.59 -14.32 16 3 C 0.13 4.09 5.74 71.24 0.41 4.50 16 4 C 0.13 3.93 6.42 42.10 0.27 4.20 16 5 N -0.49 -12.65 10.50 -190.40 -2.00 -14.65 16 6 C 0.05 0.80 12.22 130.60 1.60 2.39 16 7 S 0.23 4.44 22.35 -56.49 -1.26 3.18 16 8 C -0.30 -9.23 6.48 23.88 0.15 -9.08 16 9 C 0.59 21.89 7.78 86.45 0.67 22.56 16 10 O -0.55 -24.62 13.96 -4.29 -0.06 -24.68 16 11 N -0.69 -23.63 4.51 -440.88 -1.99 -25.62 16 12 C 0.14 5.30 2.54 46.18 0.12 5.42 16 13 H 0.08 3.35 7.52 -2.39 -0.02 3.33 16 14 C 0.19 9.99 4.81 86.73 0.42 10.41 16 15 N -0.62 -31.09 3.39 -691.54 -2.34 -33.43 16 16 C -0.23 -12.95 10.28 84.03 0.86 -12.09 16 17 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 19 N -0.95 -59.71 10.31 21.65 0.22 -59.48 16 20 Si 0.98 46.39 29.55 68.60 2.03 48.42 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 24 C 0.14 5.14 6.15 86.93 0.54 5.68 16 25 C -0.08 -2.34 0.84 -50.72 -0.04 -2.38 16 26 C -0.13 -2.71 8.22 71.98 0.59 -2.12 16 27 C -0.12 -3.67 8.57 71.98 0.62 -3.05 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.57 6.02 -2.39 -0.01 2.56 16 33 H 0.26 1.55 8.06 -2.91 -0.02 1.52 16 34 H 0.40 11.55 6.19 -92.71 -0.57 10.98 16 35 H 0.01 0.52 7.38 -2.39 -0.02 0.50 16 36 H 0.00 0.02 7.41 -2.39 -0.02 0.00 16 37 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 39 H 0.03 1.05 7.99 -2.39 -0.02 1.03 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.18 6.43 -2.38 -0.02 1.17 16 43 H 0.03 1.18 7.92 -2.39 -0.02 1.17 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -79.38 377.38 1.36 -78.02 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.43 Total: 17.66 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.92 Total: 24.91 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -6.10 Total: -133.19 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -1.65 Total: -39.00 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.26 Total: 3.18 kcal Total: -79.38 1.36 -78.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977285255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.197 kcal (2) G-P(sol) polarization free energy of solvation -79.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds