Wall clock time and date at job start Sat Apr 11 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00093 * 2 1 4 4 C 1.50700 * 109.47320 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.80279 * 89.97581 * 4 3 2 6 6 C 1.30942 * 117.36062 * 179.73456 * 5 4 3 7 7 C 1.35662 * 114.19245 * 0.51840 * 6 5 4 8 8 C 1.46686 * 126.13195 * 179.78740 * 7 6 5 9 9 O 1.21690 * 119.99776 * 359.71641 * 8 7 6 10 10 N 1.34768 * 120.00042 * 179.71822 * 8 7 6 11 11 C 1.46506 * 120.00142 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.64020 * 325.70442 * 11 10 8 13 13 C 1.54329 * 110.71899 * 88.84197 * 11 10 8 14 14 N 1.47022 * 107.26958 * 96.17352 * 13 11 10 15 15 C 1.36936 * 125.64469 * 178.90536 * 14 13 11 16 16 H 1.08000 * 119.99417 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00077 * 0.02566 * 15 14 13 18 18 N 1.31616 * 120.00067 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99931 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47202 * 119.99436 * 19 17 15 22 22 H 1.48498 * 109.47076 * 239.99865 * 19 17 15 23 23 C 1.47421 * 108.70490 * 358.93790 * 14 13 11 24 24 C 1.55154 * 110.72006 * 202.56043 * 11 10 8 25 25 C 1.52994 * 111.00734 * 35.21297 * 24 11 10 26 26 C 1.53003 * 111.00394 * 159.06589 * 24 11 10 27 27 S 1.70952 * 124.80381 * 270.00084 * 4 3 2 28 28 H 1.08994 * 109.46642 * 300.00226 * 1 2 3 29 29 H 1.08996 * 109.46627 * 60.00101 * 1 2 3 30 30 H 1.09002 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47196 * 59.99939 * 3 2 1 32 32 H 1.08997 * 109.46996 * 299.99965 * 3 2 1 33 33 H 1.07997 * 122.90642 * 180.34698 * 6 5 4 34 34 H 0.97002 * 120.00385 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.88140 * 215.58906 * 13 11 10 36 36 H 1.09004 * 109.88094 * 336.75316 * 13 11 10 37 37 H 0.97006 * 119.99605 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.36837 * 142.96734 * 23 14 13 39 39 H 1.09000 * 110.37112 * 265.18201 * 23 14 13 40 40 H 1.08996 * 109.47032 * 59.99967 * 25 24 11 41 41 H 1.08994 * 109.47201 * 180.02562 * 25 24 11 42 42 H 1.08999 * 109.47026 * 299.99583 * 25 24 11 43 43 H 1.09004 * 109.47140 * 59.99355 * 26 24 11 44 44 H 1.08995 * 109.47158 * 179.97438 * 26 24 11 45 45 H 1.09000 * 109.47158 * 299.99814 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2494 1.1275 -1.0618 6 6 5.5441 1.0305 -0.8917 7 6 5.9329 0.9941 0.4075 8 6 7.3121 0.8846 0.8948 9 8 8.2332 0.8115 0.1029 10 7 7.5592 0.8649 2.2195 11 6 8.9367 0.7561 2.7063 12 1 9.5319 0.1326 2.0390 13 6 9.5733 2.1535 2.8604 14 7 9.4216 2.5494 4.2681 15 6 9.8743 3.7172 4.8219 16 1 9.7126 3.9154 5.8712 17 6 10.5409 4.6460 4.0347 18 7 10.7383 4.4041 2.7561 19 14 11.1590 6.2386 4.7903 20 1 10.8133 6.2683 6.2343 21 1 12.6331 6.3222 4.6320 22 1 10.5214 7.3916 4.1054 23 6 8.7021 1.4808 4.9849 24 6 8.9651 0.1952 4.1526 25 6 7.8550 -0.8364 4.3627 26 6 10.3348 -0.4015 4.4826 27 16 4.4847 1.1097 1.4047 28 1 -0.3632 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 6.2419 0.9807 -1.7145 34 1 6.8249 0.9228 2.8508 35 1 10.6307 2.1099 2.5995 36 1 9.0597 2.8678 2.2168 37 1 11.2045 5.0531 2.2061 38 1 9.0989 1.3669 5.9936 39 1 7.6349 1.6997 5.0203 40 1 7.9900 -1.6626 3.6648 41 1 7.8976 -1.2129 5.3847 42 1 6.8862 -0.3682 4.1886 43 1 11.0989 0.3706 4.3920 44 1 10.3272 -0.7869 5.5021 45 1 10.5543 -1.2130 3.7887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977665932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:40 Heat of formation + Delta-G solvation = -3.029972 kcal Electronic energy + Delta-G solvation = -27471.900457 eV Core-core repulsion = 23617.612153 eV Total energy + Delta-G solvation = -3854.288304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26485 -39.52718 -38.21316 -37.70743 -33.94087 -33.09704 -31.72280 -30.72015 -29.06577 -27.88670 -26.87695 -26.42732 -25.64617 -24.33658 -23.46832 -21.76426 -20.14135 -19.80447 -18.78897 -18.49067 -16.98791 -16.88477 -16.71143 -16.19683 -15.82053 -15.40628 -15.07378 -14.74974 -14.50855 -14.03117 -13.94702 -13.89317 -13.67615 -13.26982 -13.02579 -12.75395 -12.58476 -12.11415 -12.01025 -11.87736 -11.72971 -11.68511 -11.41069 -11.10557 -11.01336 -10.80498 -10.43283 -10.29917 -10.27071 -10.04630 -10.03765 -9.88591 -9.71610 -9.65998 -9.62828 -9.15412 -8.66355 -8.53397 -6.84214 -5.70046 -3.05047 0.06685 0.98277 1.42115 2.32475 3.26561 3.29371 3.39716 3.44743 3.45994 3.47826 4.02144 4.49143 4.52135 4.82805 4.87551 4.91601 4.95343 4.99040 5.04069 5.22381 5.24329 5.26635 5.27433 5.52519 5.60396 5.76233 5.89588 5.95446 5.98881 6.13724 6.16268 6.20687 6.34791 6.53272 6.57525 6.57878 6.63157 6.65175 6.90571 7.41621 7.52862 7.60513 7.73451 7.85027 8.24112 8.39629 9.20940 9.81708 10.46776 11.40698 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.003031 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.496955 B = 9234.459124 C = 9905.183695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.039 3.961 5 N -0.458 5.458 6 C 0.109 3.891 7 C -0.270 4.270 8 C 0.592 3.408 9 O -0.521 6.521 10 N -0.701 5.701 11 C 0.123 3.877 12 H 0.092 0.908 13 C 0.175 3.825 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.143 3.857 24 C -0.090 4.090 25 C -0.132 4.132 26 C -0.126 4.126 27 S 0.194 5.806 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.191 0.809 34 H 0.393 0.607 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.252 0.748 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 -10.617 -1.729 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.236 4.236 5 N -0.174 5.174 6 C -0.048 4.048 7 C -0.395 4.395 8 C 0.375 3.625 9 O -0.399 6.399 10 N -0.352 5.352 11 C 0.019 3.981 12 H 0.110 0.890 13 C 0.050 3.950 14 N -0.329 5.329 15 C -0.357 4.357 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.741 3.259 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.017 3.983 24 C -0.091 4.091 25 C -0.190 4.190 26 C -0.183 4.183 27 S 0.450 5.550 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.208 0.792 34 H 0.228 0.772 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.829 -10.593 -1.751 20.812 hybrid contribution 0.344 1.221 -0.147 1.277 sum -17.485 -9.372 -1.899 19.929 Atomic orbital electron populations 1.22815 0.79914 1.03355 1.00408 1.87965 1.20366 1.26233 1.95545 1.20816 0.84373 0.86121 1.02768 1.26851 1.00503 1.04427 0.91788 1.66141 1.04962 1.15017 1.31250 1.22169 0.90462 0.96451 0.95713 1.26077 0.98502 1.17010 0.97881 1.16625 0.85518 0.77314 0.82994 1.90853 1.43912 1.49972 1.55148 1.45936 1.10228 1.73438 1.05549 1.22591 0.80945 1.00565 0.94021 0.89009 1.21540 0.98877 0.88528 0.86096 1.44438 1.65917 1.17392 1.05140 1.19056 1.30023 0.92902 0.93768 0.90399 1.24816 1.00942 0.98793 0.95833 1.69967 1.46427 1.35470 1.04629 0.86069 0.78322 0.83439 0.78051 1.20562 1.21757 1.21842 1.21719 0.94791 0.86831 0.94982 1.22108 0.96239 0.95638 0.95149 1.21681 0.97521 0.98306 1.01458 1.21594 0.95937 1.00433 1.00359 1.83862 0.96642 1.63696 1.10816 0.93602 0.93550 0.89089 0.90573 0.89755 0.79176 0.77174 0.92548 0.93323 0.93707 0.93949 0.96768 0.92705 0.92411 0.93276 0.91107 0.92781 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.71 10.69 -35.23 -0.38 -4.09 16 3 C 0.14 1.22 6.51 36.01 0.23 1.46 16 4 C 0.04 0.47 7.01 -13.29 -0.09 0.37 16 5 N -0.46 -6.36 10.51 -11.50 -0.12 -6.48 16 6 C 0.11 1.58 11.09 -18.85 -0.21 1.37 16 7 C -0.27 -4.05 6.48 -37.09 -0.24 -4.29 16 8 C 0.59 10.59 7.79 -12.85 -0.10 10.49 16 9 O -0.52 -11.04 16.55 5.20 0.09 -10.95 16 10 N -0.70 -11.94 4.51 -53.33 -0.24 -12.18 16 11 C 0.12 2.33 2.54 -66.09 -0.17 2.16 16 12 H 0.09 1.79 7.52 -51.93 -0.39 1.40 16 13 C 0.18 4.26 4.80 -3.06 -0.01 4.24 16 14 N -0.60 -14.82 3.38 -169.77 -0.57 -15.40 16 15 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -27.22 10.31 55.49 0.57 -26.65 16 19 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.14 2.78 6.16 -2.27 -0.01 2.77 16 24 C -0.09 -1.46 0.84 -152.10 -0.13 -1.59 16 25 C -0.13 -1.68 8.23 37.15 0.31 -1.38 16 26 C -0.13 -1.96 8.58 37.16 0.32 -1.64 16 27 S 0.19 2.27 22.31 -107.50 -2.40 -0.13 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 34 H 0.39 5.91 6.20 -40.82 -0.25 5.66 16 35 H 0.06 1.55 7.38 -51.93 -0.38 1.16 16 36 H 0.05 1.37 7.41 -51.93 -0.38 0.98 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.59 6.44 -51.93 -0.33 0.25 16 43 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -33.51 382.34 -8.32 -41.83 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.76 Total: 2.63 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 0.75 Total: 8.55 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.36 Total: -60.70 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.29 Total: -15.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -2.40 Total: -0.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.51 -8.32 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977665932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.800 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds