Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99779 * 2 1 4 4 C 1.50701 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80237 * 89.94690 * 4 3 2 6 6 C 1.30948 * 117.36221 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19111 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.13000 * 180.02562 * 7 6 5 9 9 O 1.21685 * 120.00219 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99913 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.64904 * 0.02562 * 10 8 7 12 12 C 1.54318 * 107.27096 * 181.02464 * 11 10 8 13 13 H 1.09001 * 110.72432 * 140.55530 * 12 11 10 14 14 N 1.46498 * 110.71994 * 263.83258 * 12 11 10 15 15 C 1.36942 * 119.99701 * 273.54413 * 14 12 11 16 16 H 1.07997 * 120.00277 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99628 * 179.97438 * 15 14 12 18 18 N 1.31612 * 120.00157 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99673 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47255 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47006 * 119.99901 * 19 17 15 22 22 H 1.48494 * 109.47340 * 240.00007 * 19 17 15 23 23 C 1.55157 * 102.94302 * 22.19293 * 12 11 10 24 24 C 1.52999 * 111.00317 * 82.57338 * 23 12 11 25 25 C 1.52998 * 111.00658 * 206.38507 * 23 12 11 26 26 C 1.47428 * 125.64434 * 179.71679 * 10 8 7 27 27 S 1.70949 * 124.80309 * 270.00433 * 4 3 2 28 28 H 1.08998 * 109.47320 * 59.99769 * 1 2 3 29 29 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46937 * 299.99364 * 1 2 3 31 31 H 1.08998 * 109.47204 * 60.00132 * 3 2 1 32 32 H 1.08999 * 109.47478 * 300.00557 * 3 2 1 33 33 H 1.07999 * 122.90014 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.87976 * 300.44285 * 11 10 8 35 35 H 1.09001 * 109.88100 * 61.45380 * 11 10 8 36 36 H 0.96995 * 120.00534 * 93.54532 * 14 12 11 37 37 H 0.97003 * 120.00129 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47596 * 60.00379 * 24 23 12 39 39 H 1.09003 * 109.47538 * 180.02562 * 24 23 12 40 40 H 1.09004 * 109.47103 * 299.99604 * 24 23 12 41 41 H 1.09000 * 109.47124 * 60.00002 * 25 23 12 42 42 H 1.08998 * 109.47223 * 180.02562 * 25 23 12 43 43 H 1.09000 * 109.47040 * 300.00088 * 25 23 12 44 44 H 1.08990 * 110.36649 * 274.74698 * 26 10 8 45 45 H 1.08994 * 110.36465 * 37.07016 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2484 1.1275 -1.0637 6 6 5.5428 1.0247 -0.8947 7 6 5.9332 0.9949 0.4042 8 6 7.3128 0.8861 0.8903 9 8 8.2332 0.8122 0.0977 10 7 7.5611 0.8671 2.2150 11 6 6.5484 0.9470 3.2777 12 6 7.2967 0.9151 4.6270 13 1 6.8395 1.6032 5.3380 14 7 7.3305 -0.4456 5.1688 15 6 6.2909 -0.9042 5.9332 16 1 5.4460 -0.2630 6.1362 17 6 6.3228 -2.1937 6.4462 18 7 7.3523 -2.9752 6.1984 19 14 4.9050 -2.8190 7.4895 20 1 3.8785 -1.7538 7.6194 21 1 4.3014 -4.0110 6.8411 22 1 5.4076 -3.1897 8.8367 23 6 8.7236 1.3891 4.2442 24 6 8.7943 2.9160 4.1758 25 6 9.7649 0.8381 5.2205 26 6 8.8926 0.7562 2.8380 27 16 4.4857 1.1093 1.4026 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 6.2394 0.9693 -1.7182 34 1 5.9880 1.8774 3.1865 35 1 5.8695 0.0971 3.2075 36 1 8.0892 -1.0216 4.9863 37 1 7.3747 -3.8762 6.5572 38 1 8.5357 3.3357 5.1480 39 1 9.8051 3.2212 3.9052 40 1 8.0924 3.2789 3.4250 41 1 9.7414 -0.2514 5.2000 42 1 10.7559 1.1861 4.9293 43 1 9.5390 1.1875 6.2280 44 1 9.1857 -0.2901 2.9230 45 1 9.6300 1.3117 2.2586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996734398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -12.600730 kcal Electronic energy + Delta-G solvation = -27750.357777 eV Core-core repulsion = 23895.654454 eV Total energy + Delta-G solvation = -3854.703323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29127 -39.67332 -38.12552 -37.66680 -34.06164 -33.35396 -31.58724 -30.85362 -28.83285 -28.09971 -26.82404 -26.65141 -25.98564 -24.15876 -23.74656 -21.90444 -21.11766 -19.05742 -18.77106 -18.22181 -17.28593 -16.85871 -16.47341 -16.16522 -15.76823 -15.73314 -15.14185 -14.87458 -14.37993 -14.31001 -14.11017 -13.87489 -13.52504 -13.13713 -12.89411 -12.81312 -12.66779 -12.55610 -12.20237 -11.90023 -11.82364 -11.74222 -11.59498 -11.47063 -11.06093 -10.97057 -10.67590 -10.60004 -10.27005 -10.18180 -9.99959 -9.93554 -9.73753 -9.58576 -9.45954 -9.08758 -9.06281 -8.34699 -7.14486 -5.90135 -3.20818 0.16484 1.15769 1.59725 2.37794 3.10202 3.27532 3.35762 3.41294 3.44130 3.51092 4.12825 4.45969 4.53749 4.64893 4.91120 4.97257 4.98097 5.05453 5.08346 5.13396 5.16180 5.28518 5.35319 5.40843 5.52430 5.53491 5.64863 5.82110 5.86814 6.01638 6.02876 6.10775 6.14592 6.15961 6.26480 6.30055 6.45070 6.51885 6.65864 6.73189 6.84388 7.53387 7.58474 7.68550 8.21396 8.27314 9.39662 9.92551 10.27382 11.31764 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.004474 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.487909 B = 6256.827234 C = 8741.818446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.140 3.860 4 C 0.013 3.987 5 N -0.465 5.465 6 C 0.109 3.891 7 C -0.280 4.280 8 C 0.605 3.395 9 O -0.539 6.539 10 N -0.598 5.598 11 C 0.056 3.944 12 C 0.185 3.815 13 H 0.074 0.926 14 N -0.710 5.710 15 C -0.250 4.250 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.926 5.926 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.125 4.125 26 C 0.122 3.878 27 S 0.240 5.760 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 12.527 -8.345 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.060 3.940 4 C -0.260 4.260 5 N -0.180 5.180 6 C -0.050 4.050 7 C -0.405 4.405 8 C 0.392 3.608 9 O -0.419 6.419 10 N -0.329 5.329 11 C -0.071 4.071 12 C 0.072 3.928 13 H 0.092 0.908 14 N -0.351 5.351 15 C -0.381 4.381 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.573 5.573 19 Si 0.736 3.264 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.090 4.090 24 C -0.188 4.188 25 C -0.183 4.183 26 C 0.001 3.999 27 S 0.498 5.502 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.204 0.796 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.224 0.776 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.269 12.294 -8.105 16.422 hybrid contribution -0.323 -0.622 -0.350 0.783 sum -7.592 11.672 -8.455 16.290 Atomic orbital electron populations 1.22811 0.80011 1.03407 1.00244 1.87996 1.20296 1.26161 1.95490 1.20784 0.84672 0.86167 1.02375 1.27232 1.00885 1.03980 0.93918 1.66182 1.04775 1.15238 1.31849 1.22079 0.90678 0.96851 0.95422 1.25901 0.98419 1.18138 0.98033 1.16314 0.85923 0.77322 0.81255 1.90808 1.44480 1.52095 1.54531 1.48243 1.09885 1.70568 1.04216 1.23552 0.92210 1.00904 0.90480 1.21158 0.91490 0.89555 0.90554 0.90811 1.42485 1.23716 1.09429 1.59464 1.19250 0.98238 0.96667 1.23925 0.90862 1.24747 0.97865 0.96695 1.00878 1.69658 1.30073 1.08462 1.49158 0.86157 0.81611 0.78703 0.79902 1.20413 1.21791 1.21762 1.22069 0.97431 0.95339 0.94183 1.21690 1.01492 0.93863 1.01746 1.21580 0.96051 1.02258 0.98422 1.22384 0.83801 1.01208 0.92556 1.84596 0.95239 1.62171 1.08160 0.93700 0.89077 0.93592 0.90748 0.90179 0.79586 0.92257 0.89711 0.77626 0.93329 0.92127 0.92625 0.92928 0.91117 0.93462 0.91933 0.90765 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.59 10.69 -35.23 -0.38 -4.97 16 3 C 0.14 1.45 6.51 36.01 0.23 1.69 16 4 C 0.01 0.18 7.01 -13.29 -0.09 0.08 16 5 N -0.46 -6.90 10.51 -11.50 -0.12 -7.02 16 6 C 0.11 1.63 11.09 -18.85 -0.21 1.42 16 7 C -0.28 -4.43 6.40 -37.10 -0.24 -4.66 16 8 C 0.60 10.75 7.82 -12.85 -0.10 10.65 16 9 O -0.54 -10.77 17.12 5.20 0.09 -10.68 16 10 N -0.60 -10.12 3.31 -171.92 -0.57 -10.69 16 11 C 0.06 0.93 4.61 -3.07 -0.01 0.91 16 12 C 0.19 3.24 2.86 -66.10 -0.19 3.05 16 13 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 14 N -0.71 -15.86 4.61 -51.65 -0.24 -16.10 16 15 C -0.25 -6.29 9.98 -15.06 -0.15 -6.44 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 18 N -0.93 -26.43 13.06 55.49 0.72 -25.70 16 19 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.09 -1.32 0.83 -152.24 -0.13 -1.44 16 24 C -0.13 -1.60 8.58 37.16 0.32 -1.28 16 25 C -0.13 -1.88 8.22 37.16 0.31 -1.57 16 26 C 0.12 1.98 5.82 -2.41 -0.01 1.97 16 27 S 0.24 3.28 18.65 -107.50 -2.00 1.28 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.19 2.53 8.06 -52.49 -0.42 2.10 16 34 H 0.06 0.85 6.87 -51.93 -0.36 0.49 16 35 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 36 H 0.39 9.36 6.10 -40.82 -0.25 9.11 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.65 7.91 -51.93 -0.41 0.24 16 41 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.31 7.99 -51.93 -0.41 0.90 16 45 H 0.07 1.15 7.95 -51.93 -0.41 0.73 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -31.35 380.70 -7.77 -39.11 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.73 Total: 7.36 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 0.74 Total: 5.49 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.20 Total: -59.51 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.29 Total: -15.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.00 Total: 1.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.35 -7.77 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996734398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.514 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds