Wall clock time and date at job start Sat Apr 11 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99779 * 2 1 4 4 C 1.50701 * 109.47316 * 180.02562 * 3 2 1 5 5 N 1.29427 * 124.80237 * 89.94690 * 4 3 2 6 6 C 1.30948 * 117.36221 * 180.02562 * 5 4 3 7 7 C 1.35658 * 114.19111 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.13000 * 180.02562 * 7 6 5 9 9 O 1.21685 * 120.00219 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99913 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.64904 * 0.02562 * 10 8 7 12 12 C 1.54318 * 107.27096 * 181.02464 * 11 10 8 13 13 H 1.09001 * 110.72432 * 140.55530 * 12 11 10 14 14 N 1.46498 * 110.71994 * 263.83258 * 12 11 10 15 15 C 1.36942 * 119.99701 * 273.54413 * 14 12 11 16 16 H 1.07997 * 120.00277 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99628 * 179.97438 * 15 14 12 18 18 N 1.31612 * 120.00157 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99673 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47255 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47006 * 119.99901 * 19 17 15 22 22 H 1.48494 * 109.47340 * 240.00007 * 19 17 15 23 23 C 1.55157 * 102.94302 * 22.19293 * 12 11 10 24 24 C 1.52999 * 111.00317 * 82.57338 * 23 12 11 25 25 C 1.52998 * 111.00658 * 206.38507 * 23 12 11 26 26 C 1.47428 * 125.64434 * 179.71679 * 10 8 7 27 27 S 1.70949 * 124.80309 * 270.00433 * 4 3 2 28 28 H 1.08998 * 109.47320 * 59.99769 * 1 2 3 29 29 H 1.08999 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46937 * 299.99364 * 1 2 3 31 31 H 1.08998 * 109.47204 * 60.00132 * 3 2 1 32 32 H 1.08999 * 109.47478 * 300.00557 * 3 2 1 33 33 H 1.07999 * 122.90014 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.87976 * 300.44285 * 11 10 8 35 35 H 1.09001 * 109.88100 * 61.45380 * 11 10 8 36 36 H 0.96995 * 120.00534 * 93.54532 * 14 12 11 37 37 H 0.97003 * 120.00129 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.47596 * 60.00379 * 24 23 12 39 39 H 1.09003 * 109.47538 * 180.02562 * 24 23 12 40 40 H 1.09004 * 109.47103 * 299.99604 * 24 23 12 41 41 H 1.09000 * 109.47124 * 60.00002 * 25 23 12 42 42 H 1.08998 * 109.47223 * 180.02562 * 25 23 12 43 43 H 1.09000 * 109.47040 * 300.00088 * 25 23 12 44 44 H 1.08990 * 110.36649 * 274.74698 * 26 10 8 45 45 H 1.08994 * 110.36465 * 37.07016 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2484 1.1275 -1.0637 6 6 5.5428 1.0247 -0.8947 7 6 5.9332 0.9949 0.4042 8 6 7.3128 0.8861 0.8903 9 8 8.2332 0.8122 0.0977 10 7 7.5611 0.8671 2.2150 11 6 6.5484 0.9470 3.2777 12 6 7.2967 0.9151 4.6270 13 1 6.8395 1.6032 5.3380 14 7 7.3305 -0.4456 5.1688 15 6 6.2909 -0.9042 5.9332 16 1 5.4460 -0.2630 6.1362 17 6 6.3228 -2.1937 6.4462 18 7 7.3523 -2.9752 6.1984 19 14 4.9050 -2.8190 7.4895 20 1 3.8785 -1.7538 7.6194 21 1 4.3014 -4.0110 6.8411 22 1 5.4076 -3.1897 8.8367 23 6 8.7236 1.3891 4.2442 24 6 8.7943 2.9160 4.1758 25 6 9.7649 0.8381 5.2205 26 6 8.8926 0.7562 2.8380 27 16 4.4857 1.1093 1.4026 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 6.2394 0.9693 -1.7182 34 1 5.9880 1.8774 3.1865 35 1 5.8695 0.0971 3.2075 36 1 8.0892 -1.0216 4.9863 37 1 7.3747 -3.8762 6.5572 38 1 8.5357 3.3357 5.1480 39 1 9.8051 3.2212 3.9052 40 1 8.0924 3.2789 3.4250 41 1 9.7414 -0.2514 5.2000 42 1 10.7559 1.1861 4.9293 43 1 9.5390 1.1875 6.2280 44 1 9.1857 -0.2901 2.9230 45 1 9.6300 1.3117 2.2586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996734398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:56 Heat of formation + Delta-G solvation = -33.993446 kcal Electronic energy + Delta-G solvation = -27751.285435 eV Core-core repulsion = 23895.654454 eV Total energy + Delta-G solvation = -3855.630981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59697 -40.84519 -39.27667 -38.70500 -35.77558 -34.75596 -32.71030 -32.54441 -29.86616 -29.55448 -28.02888 -27.67463 -26.94199 -25.77372 -24.92484 -23.33396 -22.37794 -20.39470 -19.93654 -19.42320 -19.08603 -17.69965 -17.62392 -17.50042 -17.04346 -16.61409 -16.54605 -16.06151 -15.79933 -15.66016 -15.40585 -15.24054 -14.84004 -14.56457 -14.35574 -13.82922 -13.72121 -13.56833 -13.26574 -13.24783 -13.16153 -12.86769 -12.77648 -12.73498 -12.60526 -12.39458 -12.14159 -12.01789 -11.89932 -11.50931 -11.46226 -11.27637 -10.98530 -10.83275 -10.69497 -10.59271 -10.23759 -9.70117 -9.02200 -7.91562 -5.20185 -0.97133 0.04720 0.47846 1.20484 1.50240 1.51690 1.60227 1.78252 1.99127 2.58097 2.64288 3.19516 3.30636 3.39004 3.65044 3.74478 3.79953 3.84968 4.01390 4.10693 4.23162 4.24808 4.32838 4.39893 4.51296 4.54258 4.57802 4.58645 4.73377 4.83624 4.88146 4.89289 4.91127 4.97165 5.05044 5.09539 5.18435 5.29222 5.39822 5.56458 5.60946 6.04830 6.28108 6.29264 6.46286 6.84140 7.37709 8.09935 8.33108 9.31747 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.004474 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.487909 B = 6256.827234 C = 8741.818446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.135 3.865 4 C 0.023 3.977 5 N -0.483 5.483 6 C 0.114 3.886 7 C -0.310 4.310 8 C 0.603 3.397 9 O -0.569 6.569 10 N -0.599 5.599 11 C 0.065 3.935 12 C 0.177 3.823 13 H 0.088 0.912 14 N -0.722 5.722 15 C -0.234 4.234 16 H 0.086 0.914 17 C -0.069 4.069 18 N -0.968 5.968 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.303 1.303 22 H -0.298 1.298 23 C -0.075 4.075 24 C -0.124 4.124 25 C -0.120 4.120 26 C 0.120 3.880 27 S 0.260 5.740 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.193 0.807 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.376 0.624 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 14.981 -8.240 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.056 3.944 4 C -0.251 4.251 5 N -0.199 5.199 6 C -0.046 4.046 7 C -0.434 4.434 8 C 0.391 3.609 9 O -0.452 6.452 10 N -0.329 5.329 11 C -0.061 4.061 12 C 0.066 3.934 13 H 0.106 0.894 14 N -0.361 5.361 15 C -0.366 4.366 16 H 0.104 0.896 17 C -0.262 4.262 18 N -0.618 5.618 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.230 1.230 22 H -0.225 1.225 23 C -0.077 4.077 24 C -0.181 4.181 25 C -0.178 4.178 26 C -0.002 4.002 27 S 0.519 5.481 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.156 14.815 -7.990 19.161 hybrid contribution 0.180 -1.322 -0.468 1.413 sum -8.976 13.493 -8.457 18.280 Atomic orbital electron populations 1.23022 0.77931 1.04218 1.01834 1.87935 1.22625 1.27035 1.95830 1.21066 0.82498 0.86191 1.04686 1.27862 1.02392 1.01570 0.93245 1.66271 1.04658 1.16473 1.32462 1.22259 0.91097 0.95711 0.95488 1.25753 0.98297 1.20490 0.98900 1.16568 0.86510 0.76673 0.81142 1.90777 1.45657 1.53589 1.55154 1.48297 1.10172 1.70251 1.04209 1.23349 0.91755 1.01427 0.89613 1.21431 0.93657 0.87399 0.90927 0.89444 1.42645 1.22720 1.11211 1.59553 1.19674 0.98551 0.96353 1.22008 0.89637 1.25449 1.00067 0.97498 1.03175 1.69813 1.32205 1.08438 1.51380 0.85232 0.79566 0.78069 0.77878 1.18293 1.23043 1.22517 1.22031 0.95530 0.97284 0.92821 1.21661 1.02707 0.91052 1.02719 1.21514 0.97606 1.00173 0.98480 1.22407 0.83935 1.00166 0.93647 1.84385 0.94064 1.61811 1.07881 0.92143 0.88777 0.91933 0.87800 0.88468 0.78994 0.89359 0.91893 0.79022 0.94295 0.90690 0.91002 0.92744 0.94301 0.90934 0.92048 0.93166 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -9.09 10.69 -148.98 -1.59 -10.69 16 3 C 0.13 2.43 6.51 71.24 0.46 2.89 16 4 C 0.02 0.56 7.01 88.46 0.62 1.18 16 5 N -0.48 -13.71 10.51 -190.30 -2.00 -15.71 16 6 C 0.11 3.36 11.09 84.23 0.93 4.29 16 7 C -0.31 -9.62 6.40 23.88 0.15 -9.47 16 8 C 0.60 21.39 7.82 86.45 0.68 22.07 16 9 O -0.57 -23.02 17.12 -4.30 -0.07 -23.09 16 10 N -0.60 -20.01 3.31 -816.06 -2.70 -22.72 16 11 C 0.07 2.08 4.61 86.73 0.40 2.48 16 12 C 0.18 5.94 2.86 46.18 0.13 6.08 16 13 H 0.09 2.74 8.03 -2.39 -0.02 2.73 16 14 N -0.72 -32.31 4.61 -317.34 -1.46 -33.78 16 15 C -0.23 -11.68 9.98 84.03 0.84 -10.85 16 16 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 18 N -0.97 -56.87 13.06 21.65 0.28 -56.58 16 19 Si 0.96 43.78 29.55 68.60 2.03 45.81 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 23 C -0.08 -2.13 0.83 -50.71 -0.04 -2.17 16 24 C -0.12 -2.65 8.58 71.98 0.62 -2.03 16 25 C -0.12 -3.50 8.22 71.98 0.59 -2.91 16 26 C 0.12 3.87 5.82 86.93 0.51 4.38 16 27 S 0.26 6.68 18.65 -56.49 -1.05 5.62 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.19 5.21 8.06 -2.91 -0.02 5.19 16 34 H 0.09 2.30 6.87 -2.39 -0.02 2.28 16 35 H 0.06 2.32 6.92 -2.39 -0.02 2.30 16 36 H 0.38 18.68 6.10 -92.71 -0.57 18.12 16 37 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.17 7.91 -2.38 -0.02 1.15 16 41 H 0.04 1.38 6.38 -2.39 -0.02 1.37 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 45 H 0.08 2.53 7.95 -2.39 -0.02 2.52 16 Total: -1.00 -68.81 380.70 1.47 -67.34 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.44 Total: 29.54 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 7.61 Total: 14.25 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.88 Total: -128.79 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.67 Total: -33.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 6.68 SS G_CDS: -1.05 Total: 5.62 kcal Total: -68.81 1.47 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996734398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.349 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds