Wall clock time and date at job start Sat Apr 11 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29518 * 121.53187 * 2 1 4 4 S 1.69482 * 107.84502 * 180.25083 * 3 2 1 5 5 C 1.72016 * 96.02618 * 359.72282 * 4 3 2 6 6 C 1.50701 * 127.31595 * 179.97438 * 5 4 3 7 7 C 1.37897 * 105.36284 * 359.97438 * 5 4 3 8 8 C 1.47344 * 123.08266 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99776 * 89.72910 * 8 7 5 10 10 N 1.34777 * 120.00550 * 270.00041 * 8 7 5 11 11 C 1.46493 * 120.00099 * 179.72479 * 10 8 7 12 12 C 1.52998 * 109.47197 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46690 * 305.00362 * 12 11 10 14 14 C 1.54801 * 109.47391 * 185.01204 * 12 11 10 15 15 N 1.45117 * 109.54067 * 172.10930 * 14 12 11 16 16 C 1.36941 * 118.75812 * 269.28697 * 15 14 12 17 17 H 1.07996 * 119.99804 * 139.41199 * 16 15 14 18 18 C 1.38809 * 119.99991 * 319.40589 * 16 15 14 19 19 N 1.31620 * 120.00306 * 156.47459 * 18 16 15 20 20 Si 1.86801 * 120.00071 * 336.47464 * 18 16 15 21 21 H 1.48500 * 109.47281 * 95.52384 * 20 18 16 22 22 H 1.48500 * 109.47517 * 215.52377 * 20 18 16 23 23 H 1.48502 * 109.47213 * 335.52615 * 20 18 16 24 24 C 1.47513 * 122.48780 * 89.29055 * 15 14 12 25 25 C 1.53577 * 111.01983 * 318.37256 * 24 15 14 26 26 C 1.51532 * 109.58402 * 320.01717 * 25 24 15 27 27 O 1.38016 * 109.46914 * 64.99760 * 12 11 10 28 28 H 1.09003 * 109.47134 * 270.25125 * 1 2 3 29 29 H 1.08997 * 109.47680 * 30.25444 * 1 2 3 30 30 H 1.09000 * 109.46784 * 150.25264 * 1 2 3 31 31 H 1.09001 * 109.46670 * 270.04194 * 6 5 4 32 32 H 1.08995 * 109.47120 * 30.04222 * 6 5 4 33 33 H 1.08997 * 109.47102 * 150.04505 * 6 5 4 34 34 H 0.97001 * 119.99499 * 359.72401 * 10 8 7 35 35 H 1.09004 * 109.47682 * 299.99938 * 11 10 8 36 36 H 1.09001 * 109.47027 * 60.00150 * 11 10 8 37 37 H 1.09003 * 109.45930 * 292.13286 * 14 12 11 38 38 H 1.09001 * 109.45950 * 52.08758 * 14 12 11 39 39 H 0.96999 * 120.00302 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.17047 * 197.97594 * 24 15 14 41 41 H 1.08998 * 109.12989 * 78.74060 * 24 15 14 42 42 H 1.09004 * 109.44965 * 199.98609 * 25 24 15 43 43 H 1.08997 * 109.45408 * 80.06038 * 25 24 15 44 44 H 1.09002 * 109.58877 * 331.62238 * 26 25 24 45 45 H 1.08997 * 109.59205 * 211.18853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0071 5 6 3.6017 -1.0019 -0.0018 6 6 4.6678 -2.0670 -0.0050 7 6 2.2352 -1.1867 0.0059 8 6 1.6037 -2.5179 0.0118 9 8 1.3532 -3.0674 1.0675 10 7 1.3085 -3.1291 -1.1526 11 6 0.6862 -4.4552 -1.1466 12 6 0.4591 -4.9186 -2.5870 13 1 -0.1221 -4.1680 -3.1227 14 6 -0.3117 -6.2610 -2.5818 15 7 -0.6909 -6.6082 -3.9388 16 6 -1.9035 -6.1840 -4.4131 17 1 -1.9896 -5.8194 -5.4260 18 6 -3.0220 -6.2229 -3.5920 19 7 -4.0436 -5.4288 -3.8334 20 14 -3.0774 -7.4021 -2.1443 21 1 -2.6492 -6.6933 -0.9117 22 1 -4.4632 -7.9063 -1.9692 23 1 -2.1639 -8.5444 -2.4011 24 6 0.1805 -7.4008 -4.8268 25 6 1.6456 -6.9583 -4.6992 26 6 1.7123 -5.4486 -4.5877 27 8 1.6774 -5.0897 -3.2125 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8876 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 4.9198 -2.3257 -1.0334 32 1 5.5563 -1.6934 0.5039 33 1 4.2982 -2.9525 0.5122 34 1 1.5082 -2.6908 -1.9946 35 1 1.3413 -5.1619 -0.6371 36 1 -0.2700 -4.4055 -0.6256 37 1 0.3256 -7.0441 -2.1711 38 1 -1.2074 -6.1631 -1.9683 39 1 -4.8250 -5.4557 -3.2594 40 1 -0.1447 -7.2685 -5.8587 41 1 0.1002 -8.4543 -4.5586 42 1 2.2006 -7.2822 -5.5797 43 1 2.0843 -7.4080 -3.8084 44 1 0.8596 -5.0061 -5.1026 45 1 2.6389 -5.0896 -5.0356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073904978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:24 Heat of formation + Delta-G solvation = -19.984697 kcal Electronic energy + Delta-G solvation = -28080.802193 eV Core-core repulsion = 24225.778676 eV Total energy + Delta-G solvation = -3855.023516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41940 -39.21561 -38.16132 -35.40953 -34.73074 -33.55364 -32.63265 -31.56175 -29.99562 -29.06782 -28.16861 -26.14825 -25.34898 -23.32364 -22.46953 -21.29560 -21.15619 -19.76339 -19.30174 -18.39917 -17.09317 -16.93258 -16.37190 -16.05869 -15.89048 -15.02839 -14.87515 -14.69229 -14.58983 -14.31853 -13.85966 -13.66126 -13.56681 -13.44445 -13.23933 -12.82557 -12.68099 -12.49853 -12.43715 -12.35941 -12.32827 -12.05630 -11.66088 -11.40811 -11.23427 -10.93475 -10.84058 -10.56631 -10.46399 -10.11882 -10.00089 -9.81856 -9.73446 -9.59037 -9.04269 -8.98116 -8.86613 -8.58075 -6.89858 -6.12819 -3.57243 0.32225 1.10983 1.51476 1.95293 2.54478 3.23728 3.28856 3.40830 3.46307 4.03100 4.09999 4.42031 4.64116 4.73945 4.81075 4.95074 5.11595 5.15062 5.18597 5.27579 5.35350 5.39110 5.42748 5.48506 5.52443 5.62098 5.63987 5.80894 5.89012 5.91472 5.92492 6.00550 6.11402 6.30370 6.31815 6.38078 6.42472 6.46106 6.59348 6.69666 6.73425 7.51051 7.95852 8.04781 8.17380 8.28377 8.89440 9.58729 9.96827 11.01976 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003291 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.810480 B = 8506.113528 C = 9418.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.156 3.844 3 N -0.467 5.467 4 S 0.271 5.729 5 C -0.131 4.131 6 C -0.087 4.087 7 C -0.213 4.213 8 C 0.587 3.413 9 O -0.531 6.531 10 N -0.706 5.706 11 C 0.129 3.871 12 C 0.071 3.929 13 H 0.065 0.935 14 C 0.119 3.881 15 N -0.603 5.603 16 C -0.284 4.284 17 H 0.077 0.923 18 C 0.044 3.956 19 N -0.892 5.892 20 Si 0.871 3.129 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.144 3.856 25 C -0.167 4.167 26 C 0.086 3.914 27 O -0.395 6.395 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.265 0.735 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.790 7.905 4.398 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.021 4.021 3 N -0.288 5.288 4 S 0.427 5.573 5 C -0.262 4.262 6 C -0.146 4.146 7 C -0.234 4.234 8 C 0.369 3.631 9 O -0.408 6.408 10 N -0.356 5.356 11 C 0.006 3.994 12 C 0.009 3.991 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.326 5.326 16 C -0.413 4.413 17 H 0.095 0.905 18 C -0.158 4.158 19 N -0.532 5.532 20 Si 0.700 3.300 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.194 1.194 24 C 0.019 3.981 25 C -0.206 4.206 26 C 0.010 3.990 27 O -0.314 6.314 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.448 9.617 5.249 20.603 hybrid contribution -1.242 -2.172 0.271 2.516 sum 16.207 7.445 5.520 18.669 Atomic orbital electron populations 1.20687 0.85845 1.04524 1.04309 1.21316 0.99058 0.86858 0.94912 1.76402 1.00062 1.25899 1.26403 1.83947 1.10758 0.95293 1.67327 1.26068 0.97208 1.02585 1.00350 1.20428 0.94702 0.95331 1.04090 1.20231 0.92548 0.95932 1.14665 1.17327 0.77985 0.83561 0.84224 1.90825 1.53258 1.65701 1.31021 1.45985 1.61793 1.19621 1.08244 1.21524 0.98634 0.82649 0.96618 1.22518 0.85934 0.99838 0.90783 0.91758 1.21824 0.97504 0.93477 0.88044 1.44013 1.17765 1.60107 1.10721 1.18790 0.83650 1.38132 1.00686 0.90550 1.25519 0.95200 0.96969 0.98109 1.69879 1.07636 1.35820 1.39846 0.87022 0.76573 0.83552 0.82831 1.20993 1.22573 1.19364 1.21266 0.88461 0.93407 0.94986 1.22559 0.98844 0.97549 1.01687 1.22002 1.00951 0.94266 0.81767 1.86076 1.30713 1.89557 1.25060 0.89273 0.89565 0.89739 0.89001 0.89965 0.89587 0.76035 0.90782 0.89806 0.93602 0.91978 0.92515 0.92260 0.96118 0.91557 0.91672 0.91862 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.96 36.00 0.36 -0.66 16 2 C 0.16 1.98 6.75 -83.20 -0.56 1.42 16 3 N -0.47 -5.95 11.97 32.50 0.39 -5.56 16 4 S 0.27 2.75 23.69 -107.50 -2.55 0.20 16 5 C -0.13 -1.41 6.67 -34.43 -0.23 -1.64 16 6 C -0.09 -0.71 10.19 36.01 0.37 -0.34 16 7 C -0.21 -2.73 5.61 -105.95 -0.59 -3.33 16 8 C 0.59 8.61 5.77 -12.56 -0.07 8.54 16 9 O -0.53 -9.62 17.11 5.26 0.09 -9.53 16 10 N -0.71 -9.77 5.49 -61.41 -0.34 -10.11 16 11 C 0.13 2.04 5.34 -4.05 -0.02 2.02 16 12 C 0.07 1.24 2.68 -25.78 -0.07 1.17 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 14 C 0.12 2.44 3.93 -3.84 -0.02 2.42 16 15 N -0.60 -13.36 1.75 -172.02 -0.30 -13.66 16 16 C -0.28 -7.44 9.69 -15.06 -0.15 -7.59 16 17 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 18 C 0.04 1.20 5.22 -17.43 -0.09 1.11 16 19 N -0.89 -25.90 13.97 55.49 0.78 -25.13 16 20 Si 0.87 21.34 25.27 -169.99 -4.29 17.04 16 21 H -0.28 -6.69 6.70 56.52 0.38 -6.31 16 22 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.14 2.68 6.30 -3.19 -0.02 2.66 16 25 C -0.17 -2.51 5.78 -27.17 -0.16 -2.66 16 26 C 0.09 1.30 6.37 36.41 0.23 1.54 16 27 O -0.39 -6.38 9.38 -26.54 -0.25 -6.63 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.96 7.39 -51.93 -0.38 0.58 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 34 H 0.41 5.03 8.44 -40.82 -0.34 4.69 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.06 1.40 3.65 -51.93 -0.19 1.21 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.06 1.10 7.91 -51.93 -0.41 0.69 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 44 H 0.06 1.09 7.40 -51.93 -0.38 0.71 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -31.28 376.34 -8.59 -39.87 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.77 Total: 3.19 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.02 Total: 4.64 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.53 Total: -54.45 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.16 Total: -16.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.29 Total: 17.04 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.55 Total: 0.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.28 -8.59 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.888 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds