Wall clock time and date at job start Sat Apr 11 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29518 * 121.53187 * 2 1 4 4 S 1.69482 * 107.84502 * 180.25083 * 3 2 1 5 5 C 1.72016 * 96.02618 * 359.72282 * 4 3 2 6 6 C 1.50701 * 127.31595 * 179.97438 * 5 4 3 7 7 C 1.37897 * 105.36284 * 359.97438 * 5 4 3 8 8 C 1.47344 * 123.08266 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99776 * 89.72910 * 8 7 5 10 10 N 1.34777 * 120.00550 * 270.00041 * 8 7 5 11 11 C 1.46493 * 120.00099 * 179.72479 * 10 8 7 12 12 C 1.52998 * 109.47197 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.46690 * 305.00362 * 12 11 10 14 14 C 1.54801 * 109.47391 * 185.01204 * 12 11 10 15 15 N 1.45117 * 109.54067 * 172.10930 * 14 12 11 16 16 C 1.36941 * 118.75812 * 269.28697 * 15 14 12 17 17 H 1.07996 * 119.99804 * 139.41199 * 16 15 14 18 18 C 1.38809 * 119.99991 * 319.40589 * 16 15 14 19 19 N 1.31620 * 120.00306 * 156.47459 * 18 16 15 20 20 Si 1.86801 * 120.00071 * 336.47464 * 18 16 15 21 21 H 1.48500 * 109.47281 * 95.52384 * 20 18 16 22 22 H 1.48500 * 109.47517 * 215.52377 * 20 18 16 23 23 H 1.48502 * 109.47213 * 335.52615 * 20 18 16 24 24 C 1.47513 * 122.48780 * 89.29055 * 15 14 12 25 25 C 1.53577 * 111.01983 * 318.37256 * 24 15 14 26 26 C 1.51532 * 109.58402 * 320.01717 * 25 24 15 27 27 O 1.38016 * 109.46914 * 64.99760 * 12 11 10 28 28 H 1.09003 * 109.47134 * 270.25125 * 1 2 3 29 29 H 1.08997 * 109.47680 * 30.25444 * 1 2 3 30 30 H 1.09000 * 109.46784 * 150.25264 * 1 2 3 31 31 H 1.09001 * 109.46670 * 270.04194 * 6 5 4 32 32 H 1.08995 * 109.47120 * 30.04222 * 6 5 4 33 33 H 1.08997 * 109.47102 * 150.04505 * 6 5 4 34 34 H 0.97001 * 119.99499 * 359.72401 * 10 8 7 35 35 H 1.09004 * 109.47682 * 299.99938 * 11 10 8 36 36 H 1.09001 * 109.47027 * 60.00150 * 11 10 8 37 37 H 1.09003 * 109.45930 * 292.13286 * 14 12 11 38 38 H 1.09001 * 109.45950 * 52.08758 * 14 12 11 39 39 H 0.96999 * 120.00302 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.17047 * 197.97594 * 24 15 14 41 41 H 1.08998 * 109.12989 * 78.74060 * 24 15 14 42 42 H 1.09004 * 109.44965 * 199.98609 * 25 24 15 43 43 H 1.08997 * 109.45408 * 80.06038 * 25 24 15 44 44 H 1.09002 * 109.58877 * 331.62238 * 26 25 24 45 45 H 1.08997 * 109.59205 * 211.18853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0071 5 6 3.6017 -1.0019 -0.0018 6 6 4.6678 -2.0670 -0.0050 7 6 2.2352 -1.1867 0.0059 8 6 1.6037 -2.5179 0.0118 9 8 1.3532 -3.0674 1.0675 10 7 1.3085 -3.1291 -1.1526 11 6 0.6862 -4.4552 -1.1466 12 6 0.4591 -4.9186 -2.5870 13 1 -0.1221 -4.1680 -3.1227 14 6 -0.3117 -6.2610 -2.5818 15 7 -0.6909 -6.6082 -3.9388 16 6 -1.9035 -6.1840 -4.4131 17 1 -1.9896 -5.8194 -5.4260 18 6 -3.0220 -6.2229 -3.5920 19 7 -4.0436 -5.4288 -3.8334 20 14 -3.0774 -7.4021 -2.1443 21 1 -2.6492 -6.6933 -0.9117 22 1 -4.4632 -7.9063 -1.9692 23 1 -2.1639 -8.5444 -2.4011 24 6 0.1805 -7.4008 -4.8268 25 6 1.6456 -6.9583 -4.6992 26 6 1.7123 -5.4486 -4.5877 27 8 1.6774 -5.0897 -3.2125 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8876 -0.5177 30 1 -0.3633 -0.8923 -0.5099 31 1 4.9198 -2.3257 -1.0334 32 1 5.5563 -1.6934 0.5039 33 1 4.2982 -2.9525 0.5122 34 1 1.5082 -2.6908 -1.9946 35 1 1.3413 -5.1619 -0.6371 36 1 -0.2700 -4.4055 -0.6256 37 1 0.3256 -7.0441 -2.1711 38 1 -1.2074 -6.1631 -1.9683 39 1 -4.8250 -5.4557 -3.2594 40 1 -0.1447 -7.2685 -5.8587 41 1 0.1002 -8.4543 -4.5586 42 1 2.2006 -7.2822 -5.5797 43 1 2.0843 -7.4080 -3.8084 44 1 0.8596 -5.0061 -5.1026 45 1 2.6389 -5.0896 -5.0356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073904978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:23 Heat of formation + Delta-G solvation = -41.138684 kcal Electronic energy + Delta-G solvation = -28081.719498 eV Core-core repulsion = 24225.778676 eV Total energy + Delta-G solvation = -3855.940822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.51289 -40.56889 -39.25704 -37.03932 -36.04910 -34.42138 -34.16749 -33.31153 -31.01814 -30.33657 -29.15217 -27.58142 -26.95400 -24.71945 -23.67595 -22.59386 -22.31331 -21.26573 -20.40004 -19.27731 -18.92419 -18.08351 -17.72438 -17.50116 -17.33546 -16.35054 -16.17196 -15.88947 -15.81027 -15.48564 -15.26538 -15.04699 -14.62979 -14.43510 -14.34423 -14.26155 -14.09691 -13.80663 -13.66034 -13.57780 -13.27933 -13.17307 -13.16884 -12.88346 -12.43381 -12.28355 -12.26100 -12.05469 -11.84323 -11.78852 -11.58357 -11.32276 -11.12598 -10.69575 -10.46647 -10.34985 -10.23183 -9.71534 -8.74254 -8.24958 -5.64927 -0.54727 0.26451 0.63516 1.00618 1.28034 1.39296 1.40574 1.48936 2.12946 2.37765 2.71261 2.99944 3.28360 3.30724 3.69453 3.84226 3.98337 4.06486 4.13954 4.16169 4.24197 4.27449 4.43244 4.44716 4.47173 4.52677 4.53313 4.58130 4.69132 4.70919 4.73290 4.76394 4.99160 5.00714 5.03365 5.05635 5.19723 5.23164 5.27275 5.36613 5.48232 5.92440 6.14463 6.37906 6.70334 6.98919 7.03385 7.60029 7.98930 8.93960 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003291 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.810480 B = 8506.113528 C = 9418.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.150 3.850 3 N -0.497 5.497 4 S 0.321 5.679 5 C -0.122 4.122 6 C -0.089 4.089 7 C -0.241 4.241 8 C 0.597 3.403 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.138 3.862 12 C 0.091 3.909 13 H 0.040 0.960 14 C 0.113 3.887 15 N -0.613 5.613 16 C -0.268 4.268 17 H 0.043 0.957 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.927 3.073 21 H -0.272 1.272 22 H -0.306 1.306 23 H -0.263 1.263 24 C 0.137 3.863 25 C -0.155 4.155 26 C 0.083 3.917 27 O -0.388 6.388 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.413 0.587 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.053 0.947 41 H 0.022 0.978 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 7.741 4.709 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 N -0.319 5.319 4 S 0.477 5.523 5 C -0.253 4.253 6 C -0.147 4.147 7 C -0.261 4.261 8 C 0.380 3.620 9 O -0.449 6.449 10 N -0.347 5.347 11 C 0.013 3.987 12 C 0.029 3.971 13 H 0.058 0.942 14 C -0.014 4.014 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.061 0.939 18 C -0.203 4.203 19 N -0.581 5.581 20 Si 0.756 3.244 21 H -0.199 1.199 22 H -0.235 1.235 23 H -0.188 1.188 24 C 0.013 3.987 25 C -0.194 4.194 26 C 0.007 3.993 27 O -0.307 6.307 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.249 0.751 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.120 0.880 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.898 9.448 5.541 23.594 hybrid contribution -2.153 -2.072 0.061 2.989 sum 18.745 7.376 5.603 20.909 Atomic orbital electron populations 1.20705 0.85613 1.04587 1.04519 1.21383 0.99520 0.86822 0.94960 1.76269 1.01877 1.26377 1.27391 1.83754 1.08658 0.94006 1.65859 1.26497 0.96973 1.03872 0.97955 1.20602 0.94705 0.94079 1.05360 1.20094 0.93499 0.94814 1.17741 1.17492 0.77098 0.83915 0.83484 1.90799 1.54892 1.66884 1.32282 1.45838 1.61241 1.18907 1.08681 1.21296 0.98383 0.83773 0.95214 1.22099 0.85920 0.97465 0.91567 0.94190 1.21888 0.97225 0.95513 0.86780 1.44134 1.17059 1.60873 1.11643 1.18671 0.85367 1.36495 0.99207 0.93896 1.26022 0.95103 0.98296 1.00882 1.69987 1.08581 1.37813 1.41693 0.86100 0.75942 0.81689 0.80696 1.19863 1.23468 1.18783 1.21436 0.90361 0.93058 0.93866 1.22462 0.96100 0.97218 1.03573 1.22197 1.01760 0.94455 0.80885 1.86102 1.29408 1.89448 1.25747 0.89017 0.88522 0.90596 0.87203 0.87331 0.90883 0.75058 0.90161 0.91132 0.91973 0.94188 0.92711 0.92871 0.95943 0.88047 0.91199 0.94515 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.07 9.96 71.24 0.71 -1.36 16 2 C 0.15 3.70 6.75 43.14 0.29 3.99 16 3 N -0.50 -12.06 11.97 -51.09 -0.61 -12.68 16 4 S 0.32 5.75 23.69 -56.49 -1.34 4.41 16 5 C -0.12 -2.34 6.67 25.61 0.17 -2.17 16 6 C -0.09 -1.19 10.19 71.24 0.73 -0.46 16 7 C -0.24 -5.93 5.61 -20.72 -0.12 -6.05 16 8 C 0.60 17.19 5.77 86.64 0.50 17.69 16 9 O -0.57 -20.58 17.11 -4.10 -0.07 -20.65 16 10 N -0.70 -18.77 5.49 -466.45 -2.56 -21.33 16 11 C 0.14 4.26 5.34 86.38 0.46 4.72 16 12 C 0.09 3.12 2.68 31.21 0.08 3.21 16 13 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 14 C 0.11 4.52 3.93 87.25 0.34 4.87 16 15 N -0.61 -26.97 1.75 -698.15 -1.22 -28.19 16 16 C -0.27 -14.37 9.69 84.03 0.81 -13.55 16 17 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 18 C -0.01 -0.28 5.22 84.86 0.44 0.16 16 19 N -0.94 -56.39 13.97 21.65 0.30 -56.09 16 20 Si 0.93 44.79 25.27 68.60 1.73 46.53 16 21 H -0.27 -12.54 6.70 99.48 0.67 -11.87 16 22 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 24 C 0.14 4.89 6.30 86.38 0.54 5.43 16 25 C -0.15 -4.12 5.78 30.31 0.18 -3.94 16 26 C 0.08 2.27 6.37 71.50 0.46 2.73 16 27 O -0.39 -11.62 9.38 -117.88 -1.11 -12.73 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.78 7.39 -2.39 -0.02 1.76 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 34 H 0.41 9.84 8.44 -92.71 -0.78 9.06 16 35 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 38 H 0.04 1.79 3.65 -2.39 -0.01 1.78 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.05 1.94 7.91 -2.39 -0.02 1.92 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.07 1.85 8.01 -2.39 -0.02 1.83 16 44 H 0.04 1.22 7.40 -2.39 -0.02 1.20 16 45 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.18 376.34 0.92 -68.26 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.19 Total: 17.22 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.60 Total: 15.25 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -4.09 Total: -118.29 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.18 Total: -33.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.73 Total: 46.53 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.34 Total: 4.41 kcal Total: -69.18 0.92 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073904978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.122 kcal (2) G-P(sol) polarization free energy of solvation -69.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds