Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99893 * 2 1 4 4 H 1.09001 * 110.91649 * 26.10088 * 3 2 1 5 5 C 1.55119 * 111.16609 * 262.17342 * 3 2 1 6 6 N 1.47426 * 104.94409 * 205.13388 * 5 3 2 7 7 C 1.36932 * 125.64879 * 204.03787 * 6 5 3 8 8 H 1.08006 * 120.00006 * 179.97438 * 7 6 5 9 9 C 1.38807 * 120.00017 * 359.95851 * 7 6 5 10 10 N 1.31616 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00197 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46995 * 59.99416 * 11 9 7 13 13 H 1.48500 * 109.47273 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46809 * 299.99456 * 11 9 7 15 15 C 1.47023 * 108.70046 * 23.99937 * 6 5 3 16 16 C 1.54319 * 107.27686 * 358.94247 * 15 6 5 17 17 H 1.08998 * 110.72015 * 96.34494 * 16 15 6 18 18 N 1.46497 * 110.72415 * 219.44694 * 16 15 6 19 19 C 1.34780 * 119.99566 * 271.15876 * 18 16 15 20 20 O 1.21280 * 120.00423 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99795 * 180.02562 * 19 18 16 22 22 C 1.50703 * 109.47064 * 179.97438 * 21 19 18 23 23 N 1.31783 * 122.75004 * 90.02390 * 22 21 19 24 24 C 1.29026 * 117.12049 * 179.97438 * 23 22 21 25 25 C 1.50703 * 124.91149 * 180.02562 * 24 23 22 26 26 S 1.70973 * 110.17179 * 359.97438 * 24 23 22 27 27 C 1.33646 * 122.74766 * 269.73019 * 22 21 19 28 28 C 1.50693 * 126.03608 * 0.04141 * 27 22 21 29 29 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46931 * 299.99510 * 1 2 3 31 31 H 1.08997 * 109.47177 * 59.99648 * 1 2 3 32 32 H 1.08988 * 110.42101 * 86.20066 * 5 3 2 33 33 H 1.09003 * 110.29989 * 323.99723 * 5 3 2 34 34 H 0.97000 * 120.00382 * 179.97438 * 10 9 7 35 35 H 1.09005 * 109.88459 * 239.52372 * 15 6 5 36 36 H 1.09005 * 109.88365 * 118.36600 * 15 6 5 37 37 H 0.96995 * 120.00423 * 91.15181 * 18 16 15 38 38 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 39 39 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 40 40 H 1.09001 * 109.47096 * 89.99651 * 25 24 23 41 41 H 1.09004 * 109.47075 * 209.99976 * 25 24 23 42 42 H 1.09001 * 109.47512 * 329.99679 * 25 24 23 43 43 H 1.08998 * 109.47673 * 90.00334 * 28 27 22 44 44 H 1.09005 * 109.46875 * 209.99611 * 28 27 22 45 45 H 1.09003 * 109.47608 * 329.99331 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4480 5 6 2.4180 1.7370 -1.4331 6 7 3.4966 2.7234 -1.2406 7 6 3.8515 3.7017 -2.1306 8 1 4.6595 4.3786 -1.8951 9 6 3.1731 3.8232 -3.3355 10 7 2.1890 2.9978 -3.6228 11 14 3.6578 5.1573 -4.5499 12 1 5.0745 4.9687 -4.9532 13 1 2.7867 5.0747 -5.7498 14 1 3.4977 6.4889 -3.9123 15 6 4.1275 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9105 0.3664 0.5470 18 7 3.2107 1.5356 2.1605 19 6 4.1627 1.1350 3.0264 20 8 5.1612 0.5818 2.6167 21 6 3.9859 1.3734 4.5039 22 6 5.1818 0.8349 5.2463 23 7 6.2508 1.5627 5.4995 24 6 7.2120 0.9918 6.1437 25 6 8.5090 1.6573 6.5256 26 16 6.8006 -0.6285 6.5025 27 6 5.2427 -0.4183 5.7067 28 6 4.1695 -1.4670 5.5676 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.5729 2.1944 -1.9474 33 1 2.7847 0.8790 -1.9964 34 1 1.7147 3.0829 -4.4646 35 1 4.0384 3.3726 0.6894 36 1 5.1783 2.2280 -0.0717 37 1 2.4121 1.9778 2.4883 38 1 3.8934 2.4433 4.6908 39 1 3.0855 0.8651 4.8488 40 1 8.4049 2.1197 7.5072 41 1 9.3041 0.9122 6.5573 42 1 8.7563 2.4213 5.7885 43 1 4.3253 -2.0264 4.6452 44 1 4.2147 -2.1481 6.4175 45 1 3.1921 -0.9853 5.5398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081854298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -8.566869 kcal Electronic energy + Delta-G solvation = -27318.905898 eV Core-core repulsion = 23464.377496 eV Total energy + Delta-G solvation = -3854.528402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44197 -39.29737 -37.96400 -35.90896 -34.04178 -33.96057 -31.85444 -30.65202 -29.99328 -28.65976 -27.00283 -26.08823 -25.30117 -24.22413 -23.04523 -20.91000 -20.56445 -19.82256 -18.93394 -18.10805 -17.37792 -16.82819 -16.38515 -15.63159 -15.22956 -15.09106 -14.90769 -14.61407 -14.34040 -14.23814 -13.74958 -13.67430 -13.51156 -13.40778 -13.19493 -13.01289 -12.79250 -12.43493 -12.33355 -12.20987 -12.02790 -11.77728 -11.43738 -11.27111 -11.24667 -11.03105 -10.80680 -10.75844 -10.22351 -9.91708 -9.81572 -9.73580 -9.71134 -9.30124 -9.08215 -8.70551 -8.68320 -8.62311 -6.89280 -5.69035 -3.11898 0.59221 1.20087 1.58474 2.59264 2.83592 3.39631 3.43386 3.44401 3.47020 3.94126 4.11778 4.49867 4.61667 4.81917 4.83968 4.95400 5.05921 5.11434 5.21551 5.23314 5.32060 5.40726 5.42681 5.48830 5.59727 5.60758 5.67668 5.69080 5.70340 5.76815 5.83533 5.93124 6.06595 6.10155 6.22673 6.50775 6.71342 6.91552 7.25678 7.55920 7.66964 7.69890 7.73416 7.80302 8.27255 8.44434 9.16772 9.77024 10.39755 11.34801 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002698 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.757885 B =10376.710129 C =11865.209132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.101 0.899 18 N -0.717 5.717 19 C 0.518 3.482 20 O -0.530 6.530 21 C -0.068 4.068 22 C 0.086 3.914 23 N -0.458 5.458 24 C 0.045 3.955 25 C -0.076 4.076 26 S 0.108 5.892 27 C -0.209 4.209 28 C -0.076 4.076 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.026 0.974 34 H 0.254 0.746 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.397 0.603 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -7.145 22.910 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.097 0.903 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.119 0.881 18 N -0.368 5.368 19 C 0.303 3.697 20 O -0.405 6.405 21 C -0.111 4.111 22 C -0.046 4.046 23 N -0.172 5.172 24 C -0.233 4.233 25 C -0.136 4.136 26 S 0.363 5.637 27 C -0.330 4.330 28 C -0.135 4.135 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.231 0.769 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.414 -7.912 22.764 24.220 hybrid contribution -0.998 1.445 -1.001 2.021 sum 1.416 -6.467 21.763 22.748 Atomic orbital electron populations 1.22706 0.81667 1.01907 0.99905 1.87851 1.19146 1.27764 1.95069 1.24068 0.92618 0.83686 1.00108 0.91488 1.22319 0.94564 0.92076 0.89418 1.44293 1.37114 1.35602 1.15795 1.19060 1.13781 1.06208 0.96026 0.90255 1.24798 0.98535 0.99383 0.97845 1.69739 1.24560 1.38764 1.24177 0.86107 0.77697 0.81024 0.80404 1.21105 1.21532 1.21106 1.21604 0.95831 0.94110 0.88102 1.22145 0.96662 1.00111 0.77870 0.88139 1.45967 1.22439 1.61221 1.07125 1.20261 0.83237 0.78562 0.87626 1.90724 1.28566 1.41742 1.79493 1.20197 0.95165 1.04053 0.91670 1.19276 0.94799 0.89939 1.00546 1.65993 1.00364 1.37287 1.13585 1.26806 1.00382 0.94712 1.01399 1.20424 0.89475 1.00789 1.02908 1.83760 1.11203 1.14337 1.54402 1.25567 1.00311 0.99546 1.07562 1.20269 0.94758 0.95559 1.02910 0.90335 0.94819 0.93549 0.87007 0.95614 0.93560 0.95222 0.94953 0.76927 0.87154 0.87411 0.89738 0.90210 0.89182 0.90119 0.91139 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -6.87 10.52 -35.23 -0.37 -7.24 16 3 C 0.05 1.05 3.17 -24.47 -0.08 0.97 16 4 H 0.07 1.18 7.69 -51.93 -0.40 0.78 16 5 C 0.14 3.48 5.63 -2.41 -0.01 3.46 16 6 N -0.60 -15.65 3.40 -169.94 -0.58 -16.22 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.75 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 11 Si 0.92 22.10 29.55 -169.99 -5.02 17.08 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.13 2.92 7.00 -3.07 -0.02 2.90 16 16 C 0.14 2.62 3.00 -66.10 -0.20 2.42 16 17 H 0.10 2.14 7.62 -51.93 -0.40 1.75 16 18 N -0.72 -10.74 5.12 -52.03 -0.27 -11.01 16 19 C 0.52 8.09 7.82 -10.98 -0.09 8.01 16 20 O -0.53 -10.67 15.72 5.56 0.09 -10.58 16 21 C -0.07 -0.79 5.88 -29.03 -0.17 -0.96 16 22 C 0.09 1.16 5.23 -84.22 -0.44 0.72 16 23 N -0.46 -6.61 10.53 -8.05 -0.08 -6.70 16 24 C 0.05 0.54 7.39 -13.46 -0.10 0.44 16 25 C -0.08 -0.61 10.46 36.01 0.38 -0.23 16 26 S 0.11 1.12 23.18 -107.50 -2.49 -1.38 16 27 C -0.21 -2.46 6.59 -35.92 -0.24 -2.70 16 28 C -0.08 -0.68 10.10 36.00 0.36 -0.32 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.11 3.00 5.87 -51.94 -0.31 2.70 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 4.65 8.54 -40.82 -0.35 4.30 16 38 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.11 0.88 6.71 -51.93 -0.35 0.53 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.58 6.75 -51.93 -0.35 0.23 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -35.31 385.22 -8.88 -44.19 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.76 Total: 2.74 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 0.24 Total: 9.48 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.37 Total: -60.09 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.28 Total: -17.83 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.31 -8.88 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081854298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.625 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds