Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30950 * 122.89816 * 2 1 4 4 C 1.29427 * 117.35973 * 180.34690 * 3 2 1 5 5 C 1.50703 * 124.80687 * 179.73403 * 4 3 2 6 6 C 1.53005 * 109.46661 * 299.97486 * 5 4 3 7 7 C 1.53000 * 109.47220 * 59.97210 * 5 4 3 8 8 S 1.70956 * 110.39375 * 359.70922 * 4 3 2 9 9 C 1.35657 * 122.90872 * 179.81038 * 2 1 3 10 10 C 1.46683 * 126.12973 * 359.95749 * 9 2 1 11 11 O 1.21686 * 119.99679 * 359.72351 * 10 9 2 12 12 N 1.34781 * 120.00026 * 179.71678 * 10 9 2 13 13 C 1.46497 * 119.99953 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.64204 * 31.85978 * 13 12 10 15 15 C 1.54325 * 110.72131 * 268.52482 * 13 12 10 16 16 N 1.47290 * 107.30599 * 219.45483 * 15 13 12 17 17 C 1.36938 * 125.79079 * 178.92205 * 16 15 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47166 * 59.99694 * 21 19 17 23 23 H 1.48493 * 109.47565 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47135 * 300.00010 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 16 15 13 26 26 C 1.54908 * 104.92961 * 24.15407 * 25 16 15 27 27 H 1.09000 * 111.00857 * 204.82205 * 26 25 16 28 28 O 1.42902 * 111.00279 * 81.00972 * 26 25 16 29 29 H 1.09001 * 109.47163 * 270.18835 * 1 2 3 30 30 H 1.08996 * 109.47724 * 30.19179 * 1 2 3 31 31 H 1.09006 * 109.46671 * 150.19582 * 1 2 3 32 32 H 1.08999 * 109.47103 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.46975 * 300.00123 * 6 5 4 35 35 H 1.09005 * 109.47240 * 59.99806 * 6 5 4 36 36 H 1.08995 * 109.46991 * 60.00706 * 7 5 4 37 37 H 1.09001 * 109.46957 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47082 * 300.00439 * 7 5 4 39 39 H 0.96996 * 119.99924 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.88239 * 338.86280 * 15 13 12 41 41 H 1.08999 * 109.88411 * 100.02710 * 15 13 12 42 42 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 43 43 H 1.09002 * 110.36696 * 265.26054 * 25 16 15 44 44 H 1.08995 * 110.36608 * 143.04891 * 25 16 15 45 45 H 0.96703 * 114.00194 * 61.45499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5065 0.9746 -0.0070 5 6 4.4821 2.1232 -0.0139 6 6 4.2559 2.9768 -1.2634 7 6 4.2690 2.9809 1.2351 8 16 3.9448 -0.6778 -0.0065 9 6 2.2440 -1.1389 0.0038 10 6 1.7193 -2.5086 0.0092 11 8 0.5175 -2.6997 0.0157 12 7 2.5682 -3.5555 0.0068 13 6 2.0441 -4.9235 0.0116 14 1 1.0950 -4.9733 -0.5221 15 6 1.8905 -5.4443 1.4562 16 7 2.3065 -6.8572 1.4591 17 6 2.3388 -7.6803 2.5531 18 1 2.0415 -7.3042 3.5208 19 6 2.7539 -8.9980 2.4181 20 7 3.1168 -9.4562 1.2388 21 14 2.7974 -10.1211 3.9102 22 1 1.4331 -10.2318 4.4863 23 1 3.2728 -11.4675 3.5027 24 1 3.7201 -9.5567 4.9278 25 6 2.6830 -7.2383 0.0857 26 6 3.0728 -5.9077 -0.6051 27 1 2.9486 -5.9773 -1.6857 28 8 4.4091 -5.5286 -0.2693 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3633 -0.8918 -0.5108 32 1 5.5005 1.7348 -0.0185 33 1 4.9612 3.8078 -1.2683 34 1 4.4077 2.3657 -2.1532 35 1 3.2374 3.3651 -1.2588 36 1 4.4301 2.3729 2.1252 37 1 4.9743 3.8119 1.2298 38 1 3.2505 3.3692 1.2397 39 1 3.5261 -3.4031 0.0018 40 1 2.5283 -4.8691 2.1274 41 1 0.8499 -5.3638 1.7706 42 1 3.4065 -10.3771 1.1445 43 1 1.8372 -7.6977 -0.4259 44 1 3.5326 -7.9210 0.1008 45 1 5.0808 -6.1655 -0.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084054760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = -19.846456 kcal Electronic energy + Delta-G solvation = -27251.191353 eV Core-core repulsion = 23396.173831 eV Total energy + Delta-G solvation = -3855.017522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52244 -39.42138 -37.83145 -35.86224 -34.73887 -34.07125 -31.80909 -31.24899 -29.11032 -28.08047 -27.54488 -26.78560 -25.48198 -24.50604 -22.14171 -21.19845 -20.62408 -19.94809 -19.27553 -17.97477 -17.37770 -16.66600 -16.57785 -15.79469 -15.53569 -15.16442 -14.87251 -14.59343 -14.41564 -14.12960 -14.05044 -13.65780 -13.45640 -13.13717 -12.98928 -12.63367 -12.61734 -12.52121 -12.32453 -11.98341 -11.82176 -11.55976 -11.48826 -11.37831 -11.36734 -11.13365 -10.86999 -10.65466 -10.39627 -10.09763 -10.02030 -9.85729 -9.71916 -9.63384 -9.29134 -8.95224 -8.72998 -8.69392 -6.88460 -5.71937 -3.11926 0.11703 1.01164 1.42931 2.33478 3.17688 3.23960 3.39043 3.42899 3.44460 3.70030 4.39725 4.45407 4.56593 4.59749 4.66407 4.85979 5.02910 5.07458 5.27588 5.31444 5.34355 5.38508 5.46008 5.46573 5.53181 5.63419 5.66866 5.68356 5.77562 5.84722 5.87840 5.92614 6.00178 6.23548 6.26660 6.47376 6.65909 6.88053 7.22372 7.45014 7.52311 7.65562 7.71345 8.07820 8.27982 8.29927 9.15356 9.75963 10.39512 11.33207 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002539 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.654129 B =11024.417246 C =11269.041786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.147 3.853 3 N -0.473 5.473 4 C 0.065 3.935 5 C -0.019 4.019 6 C -0.140 4.140 7 C -0.140 4.140 8 S 0.162 5.838 9 C -0.294 4.294 10 C 0.592 3.408 11 O -0.527 6.527 12 N -0.701 5.701 13 C 0.143 3.857 14 H 0.105 0.895 15 C 0.130 3.870 16 N -0.597 5.597 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.928 5.928 21 Si 0.917 3.083 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.126 3.874 26 C 0.067 3.933 27 H 0.060 0.940 28 O -0.563 6.563 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.406 0.594 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.116 0.884 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.730 22.410 -6.800 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.009 3.991 3 N -0.187 5.187 4 C -0.211 4.211 5 C -0.041 4.041 6 C -0.199 4.199 7 C -0.199 4.199 8 S 0.422 5.578 9 C -0.418 4.418 10 C 0.377 3.623 11 O -0.406 6.406 12 N -0.351 5.351 13 C 0.038 3.962 14 H 0.123 0.877 15 C 0.003 3.997 16 N -0.323 5.323 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.748 3.252 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.001 3.999 26 C 0.006 3.994 27 H 0.078 0.922 28 O -0.370 6.370 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.242 0.758 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.134 0.866 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.404 22.488 -6.481 23.814 hybrid contribution -0.125 -1.105 0.581 1.255 sum 4.279 21.383 -5.900 22.591 Atomic orbital electron populations 1.20654 0.85944 1.04376 1.03743 1.20661 0.98623 0.84848 0.94971 1.65985 1.04260 1.31222 1.17275 1.27412 0.94490 0.98272 1.00952 1.19919 0.95035 0.91070 0.98066 1.21812 1.03159 0.99243 0.95654 1.21813 1.03175 0.99229 0.95711 1.84020 1.05729 1.01999 1.66082 1.25515 0.95948 0.99276 1.21066 1.16721 0.86301 0.82428 0.76802 1.90779 1.14184 1.84870 1.50766 1.45744 1.10003 1.05574 1.73817 1.22223 0.96951 0.78650 0.98402 0.87678 1.21645 0.97600 0.87272 0.93139 1.44339 1.77143 1.05715 1.05095 1.19052 1.37082 0.91169 0.87171 0.90433 1.24757 1.01794 0.96959 0.97212 1.69699 1.51416 1.15480 1.21117 0.86100 0.77823 0.79749 0.81537 1.21174 1.21551 1.21155 1.22628 1.01567 0.91701 0.84050 1.23597 0.82187 0.96915 0.96678 0.92233 1.86204 1.15836 1.50354 1.84591 0.90125 0.90949 0.88072 0.89041 0.91461 0.92425 0.91332 0.92362 0.91456 0.91323 0.75847 0.95210 0.95189 0.93635 0.95863 0.86628 0.77064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.69 36.01 0.35 -0.74 16 2 C 0.15 2.00 6.79 -83.89 -0.57 1.43 16 3 N -0.47 -5.91 10.48 -7.70 -0.08 -5.99 16 4 C 0.06 0.68 5.90 -13.29 -0.08 0.60 16 5 C -0.02 -0.14 3.35 -91.77 -0.31 -0.45 16 6 C -0.14 -0.91 9.17 37.16 0.34 -0.57 16 7 C -0.14 -0.96 9.17 37.16 0.34 -0.61 16 8 S 0.16 1.80 22.29 -107.50 -2.40 -0.59 16 9 C -0.29 -4.19 6.48 -37.10 -0.24 -4.43 16 10 C 0.59 9.85 7.78 -12.85 -0.10 9.75 16 11 O -0.53 -9.91 13.92 5.20 0.07 -9.84 16 12 N -0.70 -11.57 5.07 -53.34 -0.27 -11.84 16 13 C 0.14 2.67 3.20 -66.10 -0.21 2.46 16 14 H 0.11 1.98 7.55 -51.93 -0.39 1.59 16 15 C 0.13 2.91 7.01 -2.92 -0.02 2.89 16 16 N -0.60 -15.29 3.40 -169.86 -0.58 -15.87 16 17 C -0.22 -6.06 10.28 -15.06 -0.15 -6.21 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.93 -26.29 10.09 55.49 0.56 -25.73 16 21 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.13 2.92 5.62 -2.53 -0.01 2.91 16 26 C 0.07 1.21 4.29 -24.58 -0.11 1.11 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 O -0.56 -9.56 12.24 -35.23 -0.43 -9.99 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.39 6.02 -51.93 -0.31 1.08 16 32 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.41 6.26 6.78 -40.82 -0.28 5.98 16 40 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 2.94 5.86 -51.93 -0.30 2.64 16 45 H 0.38 5.28 9.11 45.56 0.42 5.70 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -32.06 379.75 -9.20 -41.26 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.90 Total: 8.20 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.87 Total: 7.69 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.37 Total: -59.43 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.36 Total: -19.83 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.40 Total: -0.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.06 -9.20 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084054760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.409 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds