Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30950 * 122.89816 * 2 1 4 4 C 1.29427 * 117.35973 * 180.34690 * 3 2 1 5 5 C 1.50703 * 124.80687 * 179.73403 * 4 3 2 6 6 C 1.53005 * 109.46661 * 299.97486 * 5 4 3 7 7 C 1.53000 * 109.47220 * 59.97210 * 5 4 3 8 8 S 1.70956 * 110.39375 * 359.70922 * 4 3 2 9 9 C 1.35657 * 122.90872 * 179.81038 * 2 1 3 10 10 C 1.46683 * 126.12973 * 359.95749 * 9 2 1 11 11 O 1.21686 * 119.99679 * 359.72351 * 10 9 2 12 12 N 1.34781 * 120.00026 * 179.71678 * 10 9 2 13 13 C 1.46497 * 119.99953 * 180.02562 * 12 10 9 14 14 H 1.08994 * 110.64204 * 31.85978 * 13 12 10 15 15 C 1.54325 * 110.72131 * 268.52482 * 13 12 10 16 16 N 1.47290 * 107.30599 * 219.45483 * 15 13 12 17 17 C 1.36938 * 125.79079 * 178.92205 * 16 15 13 18 18 H 1.07995 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99650 * 180.02562 * 17 16 15 20 20 N 1.31621 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47166 * 59.99694 * 21 19 17 23 23 H 1.48493 * 109.47565 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47135 * 300.00010 * 21 19 17 25 25 C 1.47425 * 108.55742 * 358.92448 * 16 15 13 26 26 C 1.54908 * 104.92961 * 24.15407 * 25 16 15 27 27 H 1.09000 * 111.00857 * 204.82205 * 26 25 16 28 28 O 1.42902 * 111.00279 * 81.00972 * 26 25 16 29 29 H 1.09001 * 109.47163 * 270.18835 * 1 2 3 30 30 H 1.08996 * 109.47724 * 30.19179 * 1 2 3 31 31 H 1.09006 * 109.46671 * 150.19582 * 1 2 3 32 32 H 1.08999 * 109.47103 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.46975 * 300.00123 * 6 5 4 35 35 H 1.09005 * 109.47240 * 59.99806 * 6 5 4 36 36 H 1.08995 * 109.46991 * 60.00706 * 7 5 4 37 37 H 1.09001 * 109.46957 * 180.02562 * 7 5 4 38 38 H 1.09005 * 109.47082 * 300.00439 * 7 5 4 39 39 H 0.96996 * 119.99924 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.88239 * 338.86280 * 15 13 12 41 41 H 1.08999 * 109.88411 * 100.02710 * 15 13 12 42 42 H 0.97001 * 119.99611 * 180.02562 * 20 19 17 43 43 H 1.09002 * 110.36696 * 265.26054 * 25 16 15 44 44 H 1.08995 * 110.36608 * 143.04891 * 25 16 15 45 45 H 0.96703 * 114.00194 * 61.45499 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2182 1.0995 0.0000 4 6 3.5065 0.9746 -0.0070 5 6 4.4821 2.1232 -0.0139 6 6 4.2559 2.9768 -1.2634 7 6 4.2690 2.9809 1.2351 8 16 3.9448 -0.6778 -0.0065 9 6 2.2440 -1.1389 0.0038 10 6 1.7193 -2.5086 0.0092 11 8 0.5175 -2.6997 0.0157 12 7 2.5682 -3.5555 0.0068 13 6 2.0441 -4.9235 0.0116 14 1 1.0950 -4.9733 -0.5221 15 6 1.8905 -5.4443 1.4562 16 7 2.3065 -6.8572 1.4591 17 6 2.3388 -7.6803 2.5531 18 1 2.0415 -7.3042 3.5208 19 6 2.7539 -8.9980 2.4181 20 7 3.1168 -9.4562 1.2388 21 14 2.7974 -10.1211 3.9102 22 1 1.4331 -10.2318 4.4863 23 1 3.2728 -11.4675 3.5027 24 1 3.7201 -9.5567 4.9278 25 6 2.6830 -7.2383 0.0857 26 6 3.0728 -5.9077 -0.6051 27 1 2.9486 -5.9773 -1.6857 28 8 4.4091 -5.5286 -0.2693 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8882 -0.5168 31 1 -0.3633 -0.8918 -0.5108 32 1 5.5005 1.7348 -0.0185 33 1 4.9612 3.8078 -1.2683 34 1 4.4077 2.3657 -2.1532 35 1 3.2374 3.3651 -1.2588 36 1 4.4301 2.3729 2.1252 37 1 4.9743 3.8119 1.2298 38 1 3.2505 3.3692 1.2397 39 1 3.5261 -3.4031 0.0018 40 1 2.5283 -4.8691 2.1274 41 1 0.8499 -5.3638 1.7706 42 1 3.4065 -10.3771 1.1445 43 1 1.8372 -7.6977 -0.4259 44 1 3.5326 -7.9210 0.1008 45 1 5.0808 -6.1655 -0.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084054760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -43.263159 kcal Electronic energy + Delta-G solvation = -27252.206777 eV Core-core repulsion = 23396.173831 eV Total energy + Delta-G solvation = -3856.032946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60636 -40.70660 -39.33732 -36.54737 -36.37906 -35.58349 -33.67516 -32.23058 -30.67581 -29.55260 -28.38196 -28.04728 -26.44396 -26.23402 -23.41933 -22.38246 -21.95226 -21.55145 -20.43231 -19.16899 -18.96562 -18.11972 -17.83956 -16.89690 -16.80367 -16.62421 -16.25814 -16.01484 -15.69460 -15.42432 -14.99868 -14.79502 -14.69072 -14.53741 -14.30983 -14.17756 -13.63150 -13.53646 -13.34284 -13.22675 -13.00400 -12.92117 -12.73438 -12.62763 -12.41716 -12.30439 -12.18216 -12.11768 -11.96819 -11.91772 -11.84332 -11.22647 -10.92962 -10.75036 -10.72345 -10.62448 -10.22612 -9.79634 -8.92927 -7.82132 -5.25622 -0.86120 0.09103 0.48658 1.30453 1.46060 1.48714 1.55020 1.88492 2.00771 2.47754 2.87711 3.16127 3.28839 3.55915 3.67235 3.74082 3.82113 3.89615 3.98843 4.05652 4.11830 4.25797 4.41403 4.43300 4.65960 4.68002 4.69623 4.80065 4.81668 4.82619 4.88293 4.93012 4.94981 5.09340 5.23243 5.30779 5.34591 5.37821 5.42240 5.44669 5.68777 6.23209 6.33199 6.54817 6.84322 7.01434 7.06773 7.70461 8.33792 9.19805 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002539 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.654129 B =11024.417246 C =11269.041786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.147 3.853 3 N -0.489 5.489 4 C 0.076 3.924 5 C -0.022 4.022 6 C -0.137 4.137 7 C -0.138 4.138 8 S 0.198 5.802 9 C -0.331 4.331 10 C 0.593 3.407 11 O -0.556 6.556 12 N -0.694 5.694 13 C 0.154 3.846 14 H 0.104 0.896 15 C 0.131 3.869 16 N -0.616 5.616 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.981 3.019 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.127 3.873 26 C 0.089 3.911 27 H 0.095 0.905 28 O -0.565 6.565 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.054 0.946 39 H 0.412 0.588 40 H 0.022 0.978 41 H 0.015 0.985 42 H 0.251 0.749 43 H 0.003 0.997 44 H 0.094 0.906 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 24.229 -7.143 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 N -0.204 5.204 4 C -0.199 4.199 5 C -0.045 4.045 6 C -0.196 4.196 7 C -0.197 4.197 8 S 0.458 5.542 9 C -0.455 4.455 10 C 0.380 3.620 11 O -0.437 6.437 12 N -0.345 5.345 13 C 0.048 3.952 14 H 0.122 0.878 15 C 0.005 3.995 16 N -0.342 5.342 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.809 3.191 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.204 1.204 25 C 0.001 3.999 26 C 0.029 3.971 27 H 0.112 0.888 28 O -0.373 6.373 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.249 0.751 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.111 0.889 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.251 24.326 -6.836 26.030 hybrid contribution -0.645 -1.568 0.705 1.836 sum 5.606 22.759 -6.131 24.227 Atomic orbital electron populations 1.20619 0.85726 1.04360 1.03798 1.20882 0.99198 0.85122 0.93960 1.66067 1.05066 1.30616 1.18673 1.28161 0.94533 0.99130 0.98105 1.20220 0.95188 0.90219 0.98829 1.21808 1.03053 0.99758 0.94954 1.21814 1.03080 0.99764 0.95051 1.83824 1.03040 1.01843 1.65458 1.25305 0.98251 0.97998 1.23924 1.17004 0.85892 0.83256 0.75810 1.90760 1.15412 1.85533 1.51968 1.45580 1.10327 1.04622 1.74019 1.21924 0.97429 0.79994 0.95857 0.87763 1.21677 0.96306 0.85984 0.95576 1.44593 1.77357 1.06740 1.05509 1.19340 1.37626 0.92162 0.87976 0.90898 1.25543 1.01584 0.98109 0.99946 1.69918 1.51553 1.15429 1.22529 0.85124 0.77804 0.77692 0.78504 1.20844 1.21381 1.20413 1.22523 0.99811 0.94085 0.83439 1.23317 0.82604 0.93439 0.97775 0.88785 1.86174 1.15512 1.50761 1.84882 0.89993 0.89265 0.89659 0.86701 0.89045 0.92556 0.92708 0.92855 0.88992 0.92707 0.75051 0.96024 0.96677 0.93974 0.97919 0.88855 0.75246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.13 9.69 71.24 0.69 -1.44 16 2 C 0.15 3.94 6.79 42.09 0.29 4.23 16 3 N -0.49 -11.62 10.48 -178.28 -1.87 -13.48 16 4 C 0.08 1.45 5.90 88.46 0.52 1.97 16 5 C -0.02 -0.27 3.35 -11.54 -0.04 -0.30 16 6 C -0.14 -1.40 9.17 71.98 0.66 -0.74 16 7 C -0.14 -1.52 9.17 71.98 0.66 -0.86 16 8 S 0.20 4.03 22.29 -56.49 -1.26 2.77 16 9 C -0.33 -9.22 6.48 23.88 0.15 -9.07 16 10 C 0.59 19.71 7.78 86.45 0.67 20.38 16 11 O -0.56 -21.33 13.92 -4.30 -0.06 -21.39 16 12 N -0.69 -22.51 5.07 -440.88 -2.23 -24.74 16 13 C 0.15 5.73 3.20 46.18 0.15 5.88 16 14 H 0.10 3.94 7.55 -2.39 -0.02 3.93 16 15 C 0.13 5.98 7.01 86.68 0.61 6.59 16 16 N -0.62 -32.25 3.40 -691.31 -2.35 -34.61 16 17 C -0.24 -13.83 10.28 84.03 0.86 -12.97 16 18 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 20 N -0.94 -54.23 10.09 21.65 0.22 -54.02 16 21 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.13 5.95 5.62 86.85 0.49 6.44 16 26 C 0.09 3.15 4.29 31.98 0.14 3.29 16 27 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 28 O -0.56 -18.19 12.24 -148.98 -1.82 -20.01 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.40 6.02 -2.38 -0.01 2.39 16 32 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.41 12.16 6.78 -92.71 -0.63 11.54 16 40 H 0.02 1.02 8.03 -2.38 -0.02 1.00 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.09 4.82 5.86 -2.39 -0.01 4.81 16 45 H 0.40 10.23 9.11 -74.06 -0.67 9.56 16 Total: -1.00 -70.19 379.75 -1.31 -71.50 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.27 Total: 25.92 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.32 Total: 20.56 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -6.24 Total: -126.85 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.88 Total: -41.40 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.26 Total: 2.77 kcal Total: -70.19 -1.31 -71.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084054760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.233 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds