Wall clock time and date at job start Sat Apr 11 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37477 * 123.34589 * 2 1 4 4 C 1.33821 * 115.09670 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95477 * 0.02562 * 4 3 2 6 6 C 1.36643 * 123.35173 * 179.70720 * 2 1 3 7 7 C 1.46581 * 125.46263 * 0.02562 * 6 2 1 8 8 O 1.21704 * 119.99468 * 0.02562 * 7 6 2 9 9 N 1.34769 * 120.00162 * 179.97438 * 7 6 2 10 10 C 1.46509 * 119.99866 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46730 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46676 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47307 * 304.99601 * 12 11 10 14 14 C 1.53000 * 109.47086 * 185.00178 * 12 11 10 15 15 N 1.46897 * 109.47272 * 64.99948 * 12 11 10 16 16 C 1.46898 * 111.00050 * 204.99878 * 15 12 11 17 17 C 1.50703 * 109.46887 * 179.97438 * 16 15 12 18 18 O 1.21291 * 120.00259 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99682 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99736 * 179.97438 * 19 17 16 21 21 H 1.07995 * 120.00020 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00030 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00198 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99827 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.46939 * 89.99532 * 24 22 20 26 26 H 1.48497 * 109.46705 * 209.99658 * 24 22 20 27 27 H 1.48500 * 109.47063 * 329.99591 * 24 22 20 28 28 H 1.08999 * 109.46995 * 90.02441 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02128 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02569 * 1 2 3 31 31 H 1.07991 * 122.45344 * 359.94628 * 3 2 1 32 32 H 1.07996 * 124.52080 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00342 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46540 * 299.99695 * 10 9 7 35 35 H 1.08999 * 109.47185 * 60.00132 * 10 9 7 36 36 H 1.08994 * 109.47368 * 299.99385 * 11 10 9 37 37 H 1.08999 * 109.47319 * 60.00042 * 11 10 9 38 38 H 1.09006 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47452 * 300.00089 * 14 12 11 40 40 H 1.09000 * 109.47223 * 59.99733 * 14 12 11 41 41 H 1.00900 * 110.99919 * 81.04717 * 15 12 11 42 42 H 1.08997 * 109.47337 * 299.99902 * 16 15 12 43 43 H 1.09000 * 109.47238 * 60.00002 * 16 15 12 44 44 H 0.96998 * 120.00247 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00106 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0004 6 6 2.2583 -1.1414 0.0058 7 6 1.7286 -2.5081 0.0123 8 8 0.5259 -2.6945 0.0123 9 7 2.5733 -3.5582 0.0172 10 6 2.0437 -4.9243 0.0231 11 6 3.2044 -5.9211 0.0285 12 6 2.6514 -7.3476 0.0353 13 1 1.9702 -7.4692 0.8774 14 6 3.8069 -8.3419 0.1664 15 7 1.9292 -7.5988 -1.2190 16 6 0.9201 -8.6518 -1.0436 17 6 0.2011 -8.8807 -2.3481 18 8 0.5001 -8.2309 -3.3277 19 7 -0.7737 -9.8082 -2.4266 20 6 -1.4282 -10.0161 -3.6132 21 1 -1.1624 -9.4370 -4.4851 22 6 -2.4328 -10.9727 -3.6942 23 7 -3.0605 -11.1716 -4.8314 24 14 -2.8920 -11.9749 -2.1861 25 1 -3.9626 -11.2737 -1.4330 26 1 -3.3793 -13.3121 -2.6101 27 1 -1.6990 -12.1357 -1.3166 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3634 0.8902 0.5134 31 1 1.8201 2.1334 -0.0009 32 1 4.3205 1.7492 0.0002 33 1 3.5318 -3.4097 0.0168 34 1 1.4331 -5.0733 0.9136 35 1 1.4336 -5.0813 -0.8664 36 1 3.8154 -5.7722 -0.8618 37 1 3.8142 -5.7639 0.9182 38 1 3.4129 -9.3582 0.1717 39 1 4.4882 -8.2204 -0.6757 40 1 4.3428 -8.1555 1.0971 41 1 2.5686 -7.8313 -1.9641 42 1 1.4085 -9.5747 -0.7308 43 1 0.2026 -8.3445 -0.2828 44 1 -1.0126 -10.3281 -1.6433 45 1 -3.7620 -11.8391 -4.8879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266121812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:05 Heat of formation + Delta-G solvation = -43.843878 kcal Electronic energy + Delta-G solvation = -25975.049696 eV Core-core repulsion = 22118.991568 eV Total energy + Delta-G solvation = -3856.058128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01262 -38.66890 -38.12927 -37.12102 -34.88417 -33.91849 -31.83123 -31.52447 -31.13787 -29.50534 -27.83752 -26.47746 -24.25586 -23.75131 -23.10524 -21.43035 -20.82368 -19.40305 -19.09856 -18.42223 -18.25937 -16.21868 -16.13722 -15.92752 -15.70073 -15.43999 -15.15181 -14.92756 -14.79673 -14.14836 -13.98148 -13.82204 -13.45490 -13.31462 -13.21525 -13.11463 -12.81740 -12.60435 -12.36883 -12.35082 -12.18578 -12.02678 -11.90374 -11.66234 -11.40231 -11.29363 -11.22913 -11.12688 -10.93393 -10.57262 -9.98376 -9.94539 -9.54172 -9.30159 -9.00211 -8.76702 -8.56623 -8.16187 -8.10023 -6.28068 -3.79288 0.21245 1.15150 1.53388 2.08344 2.99476 3.04331 3.06472 3.09533 3.17121 3.77611 4.09140 4.13632 4.51648 4.60279 4.64535 4.84494 4.90214 4.96406 5.02685 5.09802 5.24727 5.25320 5.28871 5.36433 5.49943 5.55332 5.59313 5.63399 5.68394 5.72289 5.74544 5.87253 5.94695 6.00667 6.05294 6.07285 6.17434 6.28317 6.36925 7.11739 7.31610 7.59014 7.61657 8.06075 8.17934 8.62985 8.98300 9.45730 9.86241 10.85133 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002052 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.899001 B =13643.334935 C =14768.133547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.021 4.021 3 C -0.147 4.147 4 C -0.227 4.227 5 S 0.188 5.812 6 C -0.271 4.271 7 C 0.588 3.412 8 O -0.520 6.520 9 N -0.727 5.727 10 C 0.123 3.877 11 C -0.116 4.116 12 C 0.085 3.915 13 H 0.080 0.920 14 C -0.183 4.183 15 N -0.663 5.663 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.393 0.607 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.352 0.648 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.212 19.391 16.729 30.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.036 4.036 3 C -0.179 4.179 4 C -0.365 4.365 5 S 0.456 5.544 6 C -0.391 4.391 7 C 0.374 3.626 8 O -0.398 6.398 9 N -0.378 5.378 10 C 0.001 3.999 11 C -0.155 4.155 12 C -0.026 4.026 13 H 0.098 0.902 14 C -0.242 4.242 15 N -0.295 5.295 16 C -0.085 4.085 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.163 0.837 32 H 0.186 0.814 33 H 0.227 0.773 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.312 19.237 16.012 30.433 hybrid contribution -0.612 -0.656 1.129 1.442 sum 16.701 18.580 17.141 30.298 Atomic orbital electron populations 1.20768 0.88516 1.03961 1.03354 1.19583 0.98051 0.90387 0.95584 1.19965 0.92583 0.99764 1.05573 1.25234 1.00674 1.01659 1.08926 1.82908 1.04382 0.98533 1.68606 1.24475 0.97043 0.97565 1.20009 1.16888 0.86258 0.82758 0.76725 1.90822 1.14234 1.85127 1.49603 1.45930 1.09292 1.06734 1.75858 1.21437 0.96542 0.78082 1.03855 1.21760 0.97396 0.94105 1.02227 1.21502 0.94277 0.93354 0.93458 0.90152 1.22516 0.99354 1.00041 1.02288 1.60193 1.17856 1.45555 1.05910 1.21736 0.95476 0.93543 0.97749 1.19727 0.83532 0.83375 0.89787 1.90568 1.66941 1.49132 1.37931 1.42208 1.33907 1.34968 1.12013 1.19430 1.14546 1.19983 0.89295 0.86299 1.25044 0.96603 0.97547 0.97047 1.69621 1.24034 1.34122 1.24423 0.86666 0.79174 0.80721 0.82782 1.19574 1.20235 1.19568 0.90427 0.88715 0.91676 0.83727 0.81398 0.77299 0.91735 0.88951 0.90995 0.91423 0.92380 0.92199 0.92161 0.82829 0.93752 0.89458 0.79725 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.56 36.01 0.34 -0.75 16 2 C -0.02 -0.22 5.90 -105.47 -0.62 -0.84 16 3 C -0.15 -1.17 9.97 -41.41 -0.41 -1.58 16 4 C -0.23 -1.54 10.92 29.18 0.32 -1.22 16 5 S 0.19 1.37 22.16 -107.50 -2.38 -1.01 16 6 C -0.27 -2.95 6.45 -36.80 -0.24 -3.18 16 7 C 0.59 7.75 7.78 -12.90 -0.10 7.65 16 8 O -0.52 -8.71 14.24 5.18 0.07 -8.64 16 9 N -0.73 -7.87 5.55 -61.64 -0.34 -8.21 16 10 C 0.12 1.45 5.56 -4.04 -0.02 1.43 16 11 C -0.12 -1.06 5.01 -26.73 -0.13 -1.20 16 12 C 0.09 0.89 2.59 -67.71 -0.18 0.72 16 13 H 0.08 0.82 7.80 -51.93 -0.40 0.41 16 14 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 15 N -0.66 -9.70 5.33 -107.99 -0.58 -10.28 16 16 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 17 C 0.45 10.28 7.82 -10.98 -0.09 10.19 16 18 O -0.56 -15.28 15.78 5.55 0.09 -15.19 16 19 N -0.59 -14.26 5.09 -10.96 -0.06 -14.32 16 20 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.17 6.00 -51.93 -0.31 0.86 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.39 3.17 7.59 -40.82 -0.31 2.86 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.35 5.39 8.17 -39.29 -0.32 5.07 16 42 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 43 H 0.09 1.29 8.06 -51.93 -0.42 0.88 16 44 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -35.25 387.72 -8.89 -44.15 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -6.54 Total: 15.22 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.06 Total: 2.84 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.20 Total: -58.13 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.16 Total: -23.83 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.25 -8.89 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266121812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.302 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds